| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF040O04 | Sequence | 495 | 003619 (8) | ref|XP_006304573.1| | 6e-55 | hypothetical protein CARUB_v10011593mg [Capsella rubella] gb|EOA37471.1| hypothe | 742 | 008377 (2) | |||
| JMFF048K13 | Sequence | 510 | 003619 (8) | ref|XP_010260769.1| | 6e-57 | PREDICTED: organic cation/carnitine transporter 3-like [Nelumbo nucifera] | 369 | 008377 (2) | |||
| JMFS140D05 | Sequence | 527 | 003619 (8) | ref|XP_009110452.1| | 8e-58 | PREDICTED: organic cation/carnitine transporter 3 isoform X2 [Brassica rapa] | |||||
| JMSF008L05 | Sequence | 401 | 003619 (8) | ref|XP_006304573.1| | 1e-36 | hypothetical protein CARUB_v10011593mg [Capsella rubella] gb|EOA37471.1| hypothe | 783 | 012565 (6) | ref|XP_009627799.1| | 2e-90 | PREDICTED: organic cation/carnitine transporter 3-like [Nicotiana tomentosiform |
| JMSF015E10 | Sequence | 262 | 003619 (8) | ref|XP_006416822.1| | 1e-22 | hypothetical protein EUTSA_v10007377mg [Eutrema salsugineum] gb|ESQ35175.1| hypo | 801 | 012565 (6) | ref|XP_009627799.1| | 2e-84 | PREDICTED: organic cation/carnitine transporter 3-like [Nicotiana tomentosiform |
| JMSF015M16 | Sequence | 472 | 003619 (8) | emb|CDX83951.1| | 2e-47 | BnaC08g16940D [Brassica napus] | 773 | 012565 (6) | ref|XP_009627799.1| | 2e-85 | PREDICTED: organic cation/carnitine transporter 3-like [Nicotiana tomentosiform |
| JMSF024B07 | Sequence | 659 | 003619 (8) | emb|CDX83951.1| | 3e-56 | BnaC08g16940D [Brassica napus] | 780 | 012565 (6) | ref|XP_009627799.1| | 2e-91 | PREDICTED: organic cation/carnitine transporter 3-like [Nicotiana tomentosiform |
| JMSF034N22 | Sequence | 628 | 003619 (8) | ref|XP_010260769.1| | 6e-75 | PREDICTED: organic cation/carnitine transporter 3-like [Nelumbo nucifera] | 653 | 012565 (6) | ref|XP_009627799.1| | 9e-82 | PREDICTED: organic cation/carnitine transporter 3-like [Nicotiana tomentosiform |
This contig is upended
. : . : . : . : . : . :
JMSF024B07+ TCCCT
____________________________________________________________
consensus TCCCT
. : . : . : . : . : . :
JMSF024B07+ ACCTGTCCCCGCCACCGCCTCCCGACAACNTCCGTCGACAAAACCAGGGCGCAGGTTCCG
JMSF034N22+ CCGTCGACAAAACCAGGGCGCAGGTTCCG
____________________________________________________________
consensus ACCTGTCCCCGCCACCGCCTCCCGACAACNTCCGTCGACAAAACCAGGGCGCAGGTTCCG
. : . : . : . : . : . :
JMSF024B07+ ATGATCGACCGCGCGAACCCCGTCAGGAACCTCAACGACGAGTACACCCACACGTTGGAG
JMSF034N22+ ATGATCGACCGCGCGAACCCCGTCAGGAACCTCAACGACGAGTACACCCACACGTTGGAG
____________________________________________________________
consensus ATGATCGACCGCGCGAACCCCGTCAGGAACCTCAACGACGAGTACACCCACACGTTGGAG
. : . : . : . : . : . :
JMFF040O04+ AGCACGACAACGCCAGCATTCT
JMFF048K13+ TTCATTAGTAAGCACGACAACGCCAGCATTCT
JMFS140D05+ TTCATTAGTAAGCACGACAACGCCAGCATTCT
JMSF024B07+ GCCGCCGCCGTGAGGACGGCGGCCACGTTTCATTAGTAAGCACGACAACGCCAGCATTCT
JMSF034N22+ GCCGCCGCCGTGAGGACGGCGGCCACG-TTCATTAGTAAGCACGACAACGCCAGCATTCT
____________________________________________________________
consensus GCCGCCGCCGTGAGGACGGCGGCCACGTTTCATTAGTAAGCACGACAACGCCAGCATTCT
. : . : . : . : . : . :
JMFF040O04+ CTTCCGCCCAAACGAGGAGTCGGCTAACGTGGACAGCGCGATTCCGCCGACCAGACTCCC
JMFF048K13+ CTTCCGCCCAAACGAGGAGTCGGCTAACGTGGACAGCGCGATTCCGCCGACCAGACTCCC
JMFS140D05+ CTTCCGCCCAAACGAGGAGTCGGCTAACGTGGACAGCGCGATTCCGCCGACCAGACTCCC
JMSF024B07+ CTTCCGCCCAAACGAGGAGTCGGCTAACGTGGACAGCGCGATTCCGCCGACCAGACTCCC
JMSF034N22+ CTTCCGCCCAAACGAGGAGTCGGCTAACGTGGACAGCGCGATTCCGCCGACCAGACTCCC
JMSF015M16+ CAAACGAGGAGTCGGCTAACGTGGACAGCGCGATTCCGCNGACCAGACTCCC
____________________________________________________________
consensus CTTCCGCCCAAACGAGGAGTCGGCTAACGTGGACAGCGCGATTCCGCCGACCAGACTCCC
. : . : . : . : . : . :
JMFF040O04+ GACAAAGTACGAGGTTGACGGCAGGCCGGTAATAACCGCCCCGGCACACTGTAGGCCCCA
JMFF048K13+ GACAAAGTACGAGGTTGACGGCAGGCCGGTAATAACCGCCCCGGCACACTGTAGGCCCCA
JMFS140D05+ GACAAAGTACGAGGTTGACGGCAGGCCGGTAATAACCGCCCCGGCACACTGTAGGCCCCA
JMSF024B07+ GACAAAGTACGAGGTTGACGGCAGGCCGGTAATAACCGCCCCGGCACACTGTAGGCCCCA
JMSF034N22+ GACAAAGTACGAGGTTGACGGCAGGCCGGTAATAACCGCCCCGGCACACTGTAGGCCCCA
JMSF008L05+ CCCCGGCACACTGTAGGCCCCA
JMSF015M16+ GACAAAGTACGAGGTTGACGGCAGGCCGGTAATAACCGCCCCGGCACACTGTAGGCCCCA
____________________________________________________________
consensus GACAAAGTACGAGGTTGACGGCAGGCCGGTAATAACCGCCCCGGCACACTGTAGGCCCCA
. : . : . : . : . : . :
JMFF040O04+ CTCGGAAACCACGGAGGTGTGCGCCGGCGTGTCCCACCCCCACGCCTCCTTGGGAAGCTG
JMFF048K13+ CTCGGAAACCACGGAGGTGTGCGCCGGCGTGTCCCACCCCCACGCCTCCTTGGGAAGCTG
JMFS140D05+ CTCGGAAACCACGGAGGTGTGCGCCGGCGTGTCCCACCCCCACGCCTCCTTGGGAAGCTG
JMSF024B07+ CTCGGAAACCACGGAGGTGTGCGCCGGCGTGTCCCACCCCCACGCCTCCTTGGGAAGCTG
JMSF034N22+ CTCGGAAACCACGGAGGTGTGCGCCGGCGTGTCCCACCCCCACGCCTCCTTGGGAAGCTG
JMSF008L05+ CTCGGAAACCACGGAGGTGTGCGCCGGCGTGTCCCACCCCCACGCCTCCTTGGGAAGCTG
JMSF015M16+ CTCGGAAACCANGGAGGTGTGCGCCGGCGTGTCCCACCCCCACGCCTCCTTGGGAAGCTG
____________________________________________________________
consensus CTCGGAAACCACGGAGGTGTGCGCCGGCGTGTCCCACCCCCACGCCTCCTTGGGAAGCTG
. : . : . : . : . : . :
JMFF040O04+ GCAAACATCAGCCGTACAGAGCGACGAGGAAGACGAATCGTTGCAGTGCCACGTGGGCAC
JMFF048K13+ GCAAACATCAGCCGTACAGAGCGACGAGGAAGACGAATCGTTGCAGTGCCACGTGGGCAC
JMFS140D05+ GCAAACATCAGCCGTACAGAGCGACGAGGAAGACGAATCGTTGCAGTGCCACGTGGGCAC
JMSF024B07+ GCAAACATCAGCCGTACAGAGCGACGAGGAAGACGAATCGTTGCAGTGCCACGTGGGCAC
JMSF034N22+ GCAAACATCAGCCGTACAGAGCGACGAGGAAGACGAATCGTTGCAGTGCCACGTGGGCAC
JMSF008L05+ GCAAACATCAGCCGTACAGAGCGACGAGGAAGACGAATCGTTGCAGTGCCACGTGGGCAC
JMSF015E10+ CGTTGCAGTGCCACGTGGGCAC
JMSF015M16+ GCAAACATCAGCCGTACAGAGCGACGAGGAAGACGAATCGTTGCAGTGCCACGTGGGCAC
____________________________________________________________
consensus GCAAACATCAGCCGTACAGAGCGACGAGGAAGACGAATCGTTGCAGTGCCACGTGGGCAC
. : . : . : . : . : . :
JMFF040O04+ CACGTCAGTGAAGATGGTGATGAAGGTTTGGTGGGCGTCGAATATCCATGCCAGAGATGC
JMFF048K13+ CACGTCAGTGAAGATGGTGATGAAGGTTTGGTGGGCGTCGAATATCCATGCCAGAGATGC
JMFS140D05+ CACGTCAGTGAAGATGGTGATGAAGGTTTGGTGGGCGTCGAATATCCATGCCAGAGATGC
JMSF024B07+ CACGTCAGTGAAGATGGTGATGAAGGTTTGGTGGGCGTCGAATATCCATGCCAGAGATGC
JMSF034N22+ CACGTCAGTGAAGATGGTGATGAAGGTTTGGTGGGCGTCGAATATCCATGCCAGAGATGC
JMSF008L05+ CACGTCAGTGAAGATGGTGATGAAGGTTTGGTGGGCGTCGAATATCCATGCCAGAGATGC
JMSF015E10+ CACGTCAGTGAAGATGGTGATGAAGGTTTGGTGGGCGTCGAATATCCATGCCAGAGATGC
JMSF015M16+ CACGTCAGTGAAGATGGTGATGAAGGTTTGGTGGGCGTCGAATATCCATGCCAGAGATGC
____________________________________________________________
consensus CACGTCAGTGAAGATGGTGATGAAGGTTTGGTGGGCGTCGAATATCCATGCCAGAGATGC
. : . : . : . : . : . :
JMFF040O04+ CAGCGTGGCTTGCAGAAGCTGGACCCACCCAAACTTTCCGATACAACGTTCGATGGTGTC
JMFF048K13+ CAGCGTGGCTTGCAGAAGCTGGACCCACCCAAACTTTCCGATACAACGTTCGATGGTGTC
JMFS140D05+ CAGCGTGGCTTGCAGAAGCTGGACCCACCCAAACTTTCCGATACAACGTTCGATGGTGTC
JMSF024B07+ CAGCGTGGCTTGCAGAAGCTGGACCCACCCAAACTTTCCGATACAACGTTCGATGGTGTC
JMSF034N22+ CAGCGTGGCTTGCAGAAGCTGGACCCACCCAAACTTTCCGATACAACGTTCGATGGTGTC
JMSF008L05+ CAGCGTGGCTTGCAGAAGCTGGACCCACCCAAACTTTCCGATACAACGTTCGATGGTGTC
JMSF015E10+ CAGCGTGGCTTGCAGAAGCTGGACCCACCCAAACTTTCCGATACAACGTTCGATGGTGTC
JMSF015M16+ CAGCGTGGCTTGCAGAAGCTGGACCCACCCAAACTTTCCGATACAACGTTCGATGGTGTC
____________________________________________________________
consensus CAGCGTGGCTTGCAGAAGCTGGACCCACCCAAACTTTCCGATACAACGTTCGATGGTGTC
. : . : . : . : . : . :
JMFF040O04+ GTCCAAGGAACGTTTCTTTCTGTTTTTCCCTTCGTCATTGGCGGTTGGGGGAGCCAATAG
JMFF048K13+ GTCCAAGGAACGTTTCTTTCTGTTTTTCCCTTCGTCATTGGCGGTTGGGGGAGCCAATAG
JMFS140D05+ GTCCAAGGAACGTTTCTTTCTGTTTTTCCCTTCGTCATTGGCGGTTGGGGGAGCCAATAG
JMSF024B07+ GTCCAAGGAACGTTTCTTTCTGTTTTTCCCTTCGTCATTGGCGGTTGGGGGAGCCAATAG
JMSF034N22+ GTCCAAGGAACGTTTCTTTCTGTTTTTCCCTTCGTCATTGGCGGTTGGGGGAGCCAATAG
JMSF008L05+ GTCCAAGGAACGTTTCTTTCTGTTTTTCCCTTCGTCATTGGCGGTTGGGGGAGCCAATAG
JMSF015E10+ GTCCAAGGAACGTTTCTTTCTGTTTTTCCCTTCGTCATTGGCGGTTGGGGGAGCCAATAG
JMSF015M16+ GTCCAAGGAACGTTTCTTTCTGTTTTTCCCTTCGTCATTGGCGGTTGGGGGAGCCAATAG
____________________________________________________________
consensus GTCCAAGGAACGTTTCTTTCTGTTTTTCCCTTCGTCATTGGCGGTTGGGGGAGCCAATAG
. : . : . : . : . : . :
JMFF040O04+ GGGATCCCTTTCGCTCGCCATTGTAACAATCTAATACGAGTATAATATATGAT
JMFF048K13+ GGGATCCCTTTCGCTCGCCA-TGTAACAATCTAATACGAGTATAATATATGAT
JMFS140D05+ GGGATCCCTTTCGCTCGCCATTGTAA
JMSF024B07+ GGGATCCCTTTCGCTCGCCATTGTAACAATCTAATACGAGTATAATATATGAT
JMSF034N22+ GGGATCCCTTTCGCTCGCCATTGTAACAATCTAATACGAGTATAATATATGATAAGCT
JMSF008L05+ GGGATCCCTTTCGCTCGCCATTGTAACAATCTAATACGAGTATAATATATGATAAGCT
JMSF015E10+ GGGATCCCTTTCGCTCGCCATTGTAACAATCTAATACGAGTATAATATATGATAAGCT
JMSF015M16+ GGGATCCCTTTCGCTCGCCATTGTAACAATCTAATACGAGTATAATATATGATAAGCTTC
____________________________________________________________
consensus GGGATCCCTTTCGCTCGCCATTGTAACAATCTAATACGAGTATAATATATGATAAGCTTC