Contig 003618:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF015I07Sequence223003618 (2)
JMSF044H01Sequence648003618 (2)ref|XP_006382338.1|2e-40hypothetical protein POPTR_0005s01170g, partial [Populus trichocarpa] gb|ERP6013

Alignment

This contig is upended


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JMSF044H01+                                                        GACATCGATCTTGAT
                      ____________________________________________________________
consensus                                                          GACATCGATCTTGAT
 
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JMSF044H01+           TGGGCGTCCGATGACTTTCCCAATTTTCTTCAAGAAATCGTCGTCAAAGTATTCAATTGG
                      ____________________________________________________________
consensus             TGGGCGTCCGATGACTTTCCCAATTTTCTTCAAGAAATCGTCGTCAAAGTATTCAATTGG
 
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JMSF044H01+           GAGGGAGGGGAATCGAATCCATGCCAGAAGCTTGTTTAACTTGCTATTCCTTGGATCAAA
                      ____________________________________________________________
consensus             GAGGGAGGGGAATCGAATCCATGCCAGAAGCTTGTTTAACTTGCTATTCCTTGGATCAAA
 
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JMSF044H01+           ATTGGGTCTCCATTGTTGGGTAACCAAGTAGTGGTCAAGAACCATCCAGGGGCCACCATA
                      ____________________________________________________________
consensus             ATTGGGTCTCCATTGTTGGGTAACCAAGTAGTGGTCAAGAACCATCCAGGGGCCACCATA
 
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JMSF044H01+           TTTCACTGCATCATAATCCGCAAGGGATTCGAATTTGGCTATGAAGTAATCGTGAGTTAG
                      ____________________________________________________________
consensus             TTTCACTGCATCATAATCCGCAAGGGATTCGAATTTGGCTATGAAGTAATCGTGAGTTAG
 
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JMSF044H01+           AGCTATCAATTCAAACCTAGCTTCTGTCCTCCACATTCGTTGCAAACGTTGTAGAAGGAA
                      ____________________________________________________________
consensus             AGCTATCAATTCAAACCTAGCTTCTGTCCTCCACATTCGTTGCAAACGTTGTAGAAGGAA
 
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JMSF044H01+           GGAATAGCCGACTGACCTTCCAAGAACACGCAAGATAAGCGATCGTCGCCATGGACGGCG
                      ____________________________________________________________
consensus             GGAATAGCCGACTGACCTTCCAAGAACACGCAAGATAAGCGATCGTCGCCATGGACGGCG
 
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JMSF044H01+           AAGTCTTTCCTTCTCTTCTTTAGTTACCAGGATAACCGGATAGTCGTAAGATTTTCCATC
                      ____________________________________________________________
consensus             AAGTCTTTCCTTCTCTTCTTTAGTTACCAGGATAACCGGATAGTCGTAAGATTTTCCATC
 
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JMSF044H01+           GTCCTCCATCTCATCATCATCCGAGTCCGCCTTGTCGTCAGATGCCGGTTGGGAGGGTCT
                      ____________________________________________________________
consensus             GTCCTCCATCTCATCATCATCCGAGTCCGCCTTGTCGTCAGATGCCGGTTGGGAGGGTCT
 
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JMSF044H01+           TCGATTCCACGCATNGCTCGGAGTCGCGGCTGGAGTTCTCCATTGGGCAGAGTCCGGCGT
JMSF015I07+                           CTCGGAGTCGCGGCTGGAGTTCTCCATTGGGCAGAGTCCGGCGT
                      ____________________________________________________________
consensus             TCGATTCCACGCATNGCTCGGAGTCGCGGCTGGAGTTCTCCATTGGGCAGAGTCCGGCGT
 
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JMSF044H01+           GCTCGCTCTTTGTCNGGTGGGTGTNTCCATTGGTCGATAAGTCGGGGGGTAGTTGAAAAT
JMSF015I07+           GCTCGCTCTTTGTCTGGTGGGTGTCTCCATTGGTC-CTAAGTCGGGGGGTAGTTGAAAAT
                      ____________________________________________________________
consensus             GCTCGCTCTTTGTCTGGTGGGTGTCTCCATTGGTCGCTAAGTCGGGGGGTAGTTGAAAAT
 
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JMSF044H01+           TNGTATCCG                                                   
JMSF015I07+           TGGTATCCGCTGAAGCTCTGCATCTTTTGGCTCTCCTTGTACTTCTTTCGAGCAGATCTT
                      ____________________________________________________________
consensus             TGGTATCCGCTGAAGCTCTGCATCTTTTGGCTCTCCTTGTACTTCTTTCGAGCAGATCTT
 
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JMSF015I07+           GTTCTTCCGGCGATCGATTGGTCGCCATTGGCGAAGAGAAATCCGAGAGAGGTTCCGCTC
                      ____________________________________________________________
consensus             GTTCTTCCGGCGATCGATTGGTCGCCATTGGCGAAGAGAAATCCGAGAGAGGTTCCGCTC