Contig 003617:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF015C03Sequence302003617 (3)emb|CDP09597.1|5e-18unnamed protein product [Coffea canephora]747002946 (3)ref|XP_009607053.1|1e-70PREDICTED: ubiquitin-associated domain-containing protein 2 isoform X2 [Nicotia
JMSF015G17Sequence481003617 (3)ref|XP_011075444.1|1e-37PREDICTED: ubiquitin-associated domain-containing protein 2 [Sesamum indicum]724002946 (3)ref|XP_011075444.1|3e-59PREDICTED: ubiquitin-associated domain-containing protein 2 [Sesamum indicum]
JMSF039N03Sequence669003617 (3)ref|XP_011075444.1|2e-51PREDICTED: ubiquitin-associated domain-containing protein 2 [Sesamum indicum]870002946 (3)ref|XP_011075444.1|1e-40PREDICTED: ubiquitin-associated domain-containing protein 2 [Sesamum indicum]

Alignment

This contig is upended


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JMSF039N03+                                    CATTCAATTACAGAGTATTTACAATTGACTGGTTA
                      ____________________________________________________________
consensus                                      CATTCAATTACAGAGTATTTACAATTGACTGGTTA
 
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JMSF039N03+           TGGAAGCAAAAAATTCAAACAATTTCTTTAATCCAACTGATTTGGCACTCGGATATGAAA
                      ____________________________________________________________
consensus             TGGAAGCAAAAAATTCAAACAATTTCTTTAATCCAACTGATTTGGCACTCGGATATGAAA
 
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JMSF039N03+           TTATAAAAATCTATATCGGTTCAAATCTCAAAGTTGGGATATCAATTCTTAGTATAATAG
                      ____________________________________________________________
consensus             TTATAAAAATCTATATCGGTTCAAATCTCAAAGTTGGGATATCAATTCTTAGTATAATAG
 
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JMSF039N03+           GAATCATCAAGCACTACCTTTAAGAAGTTTTAATGCAATGGTCTCTAGTAGTAAAGAAAC
                      ____________________________________________________________
consensus             GAATCATCAAGCACTACCTTTAAGAAGTTTTAATGCAATGGTCTCTAGTAGTAAAGAAAC
 
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JMSF039N03+           TATAACAGAGAATAGGATGAAGACAGAATACTTATTCGAACCAATTTGCCTTTCAAAGAC
JMSF015G17+                                                                      C
                      ____________________________________________________________
consensus             TATAACAGAGAATAGGATGAAGACAGAATACTTATTCGAACCAATTTGCCTTTCAAAGAC
 
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JMSF039N03+           TCGGAAGTAGTAGAGCAGATATGCTCCAAATATTAGTTCTGGGGTAGATGAAAAGGAAAA
JMSF015G17+           TCGGAAGTAGTAGAGCAGATATGCTCCAAATATTAGTTCTGGGGTAGATGAAAAGGAAAA
                      ____________________________________________________________
consensus             TCGGAAGTAGTAGAGCAGATATGCTCCAAATATTAGTTCTGGGGTAGATGAAAAGGAAAA
 
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JMSF039N03+           TACAGATACAATTAGCTTCCAGAGTTGAAGTTTCTTGAAGATATCCTGATAAGACCATCC
JMSF015C03+                                               GAAGATATCCTGATAAGACCATCC
JMSF015G17+           TACAGATACAATTAGCTCCCAGAGTTGAAGTTTCTTGAAGATATCCTGATAAGACCATCC
                      ____________________________________________________________
consensus             TACAGATACAATTAGCTTCCAGAGTTGAAGTTTCTTGAAGATATCCTGATAAGACCATCC
 
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JMSF039N03+           GAGGTTGCTGGAACGGCCTTGAATTCCAAAGACGATTGTGAAGAGAGCACACACAATCAC
JMSF015C03+           GAGGTTGCTGGAACGGCCTTGAATTCCAAAGACGATTGTGAAGAGAGCACACACAATCAC
JMSF015G17+           GAGGTTGCTGGAACGGCCTTGAATTCCAAAGACGATTGTGAAGAGAGCACACACAATCAC
                      ____________________________________________________________
consensus             GAGGTTGCTGGAACGGCCTTGAATTCCAAAGACGATTGTGAAGAGAGCACACACAATCAC
 
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JMSF039N03+           CAACGCTCTCGTCACCGGCGCATTGTTGAAACCAGATGGGCCGCCGTTCATCTCCGTAGT
JMSF015C03+           CAACGCTCTCGTCACCGGCGCATTGTTGAAACCAGATGGGCCGCCGTTCATCTCCGTAGT
JMSF015G17+           CAACGCTCTCGTCACCGGCGCATTGTTGAAACCAGATGGGCCGCCGTTCATCTCCGTAGT
                      ____________________________________________________________
consensus             CAACGCTCTCGTCACCGGCGCATTGTTGAAACCAGATGGGCCGCCGTTCATCTCCGTAGT
 
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JMSF039N03+           GAACCCGACGACCTGAATTGAGCTCACCGTCAATTATCCTTCGGCGCTTATGCTCTTCCA
JMSF015C03+           GAACCCGACGACCTGAATTGAGCTCACCGTCAATTATCCTTCGGCGCTTATGCTCTTCCA
JMSF015G17+           GAACCCGACGACCTGAATTGAGCTCACCGTCAATTATCCTTCGGCGCTTATGCTCTTCCA
                      ____________________________________________________________
consensus             GAACCCGACGACCTGAATTGAGCTCACCGTCAATTATCCTTCGGCGCTTATGCTCTTCCA
 
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JMSF039N03+           CTTCCGCTCTGTCTGTACCAATATGTACAACTGTATGTACGTATAGTCAGTCAATCTCTC
JMSF015C03+           CTTCCGCTCTGTCTGTACCAATATGTACAACTGTATGTACGTATAGTCAGTCAATCTCTC
JMSF015G17+           CTTCCGCTCTGTCTGTACCAATATGTACAACTGTATGTACGTATAGTCAGTCAATCTCTC
                      ____________________________________________________________
consensus             CTTCCGCTCTGTCTGTACCAATATGTACAACTGTATGTACGTATAGTCAGTCAATCTCTC
 
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JMSF039N03+           CGCCTCTTCGTCTTCTTCAAGAAATTTGCCC                             
JMSF015C03+           CGCCTCTTCGTCTTCTTCAAGAAATTTGCCC                             
JMSF015G17+           CGCCTCTTCGTCTTCTTCAAGAAATTTGCCCTCTTCTGGAATTCTCTTCGCGATGGGGAT
                      ____________________________________________________________
consensus             CGCCTCTTCGTCTTCTTCAAGAAATTTGCCCTCTTCTGGAATTCTCTTCGCGATGGGGAT
 
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JMSF015G17+           TTATCGGATTTGTTCGTTAATGCCGGAGGTTTGGTAAACGGGTCGGGCTGCTTTTTCGTC
                      ____________________________________________________________
consensus             TTATCGGATTTGTTCGTTAATGCCGGAGGTTTGGTAAACGGGTCGGGCTGCTTTTTCGTC