Contig 003616:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN002A12Sequence627003616 (4)emb|CDO99199.1|2e-75unnamed protein product [Coffea canephora]
JMFN013B04Sequence611003616 (4)emb|CDO99199.1|4e-60unnamed protein product [Coffea canephora]
JMSF015A02Sequence476003616 (4)ref|XP_009622134.1|215PREDICTED: uncharacterized protein LOC104113619 [Nicotiana tomentosiformis]757003616 (4)emb|CDO99199.1|8e-75unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF015A02-                                                               CAGAGCG
                      ____________________________________________________________
consensus                                                                  CAGAGCG
 
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rJMSF015A02-          TCAATTCGACATTGCCGATTCAAGTAAAAATTACTACAAGTAACTTTCAAAATTTAGGAT
                      ____________________________________________________________
consensus             TCAATTCGACATTGCCGATTCAAGTAAAAATTACTACAAGTAACTTTCAAAATTTAGGAT
 
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JMFN013B04+                           TAAAGTTCAACTAGAACAGAGA-TAAATCAAAAGATCAGGATGT
rJMSF015A02-          TCCATCCAAATAAGATTAAAGTTCAACTAGAACAGAGATTAAATCAAAAGATCAGGATGT
                      ____________________________________________________________
consensus             TCCATCCAAATAAGATTAAAGTTCAACTAGAACAGAGATTAAATCAAAAGATCAGGATGT
 
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JMFN013B04+           TA-AAGGCCACACCAGGCCACCGGAAAACTAACAACAATCGAGTTTGTAAACGATGTGCG
rJMSF015A02-          TATAAGGCCACACCAGGCCACCGGAAAACTAACAACAATCGAGTTTGTAAACGATGTGCG
JMFN002A12+               AGGCCACACCAGGCCACCGGANAACTAACAACAATCGAGTTTGTAAACGATGTGCG
                      ____________________________________________________________
consensus             TATAAGGCCACACCAGGCCACCGGAAAACTAACAACAATCGAGTTTGTAAACGATGTGCG
 
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JMFN013B04+           TCAAAACTGAAACCGTGTCACCCCTTCTCAATTGGTTTTTGTTTTGGCAGCCTTCTTTGT
rJMSF015A02-          TCAAAACTGAAACCGTGTCACCCCTTCTCAATTGGTTTTTGTTTTGGCAGCCTTCTTTGT
JMFN002A12+           TCAAAACTGAAACCGTGTCACCCCTTCTCAATTGGTTTTTGTTTTGGCAGCCTTCTTTGT
                      ____________________________________________________________
consensus             TCAAAACTGAAACCGTGTCACCCCTTCTCAATTGGTTTTTGTTTTGGCAGCCTTCTTTGT
 
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JMFN013B04+           TTGTCTCCTAGGCATTGAATTCTTCATGCCAACGAAAAAGAGCAACGCTCCAATTAGTTG
rJMSF015A02-          TTGTCTCCTAGGCATTGAATTCTTCATGCCAACGAAAAAGAGCAACGCTCCAATTAGTTG
JMFN002A12+           TTGTCTCCTAGGCATTGAATTCTTCATGCCAACGAAAAAGAGCAACGCTCCAATTAGTTG
                      ____________________________________________________________
consensus             TTGTCTCCTAGGCATTGAATTCTTCATGCCAACGAAAAAGAGCAACGCTCCAATTAGTTG
 
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JMFN013B04+           CAAACCCTGTGTAAATTTAACAAAAAGTTGAGCAAATTCCATTTTGTCAGCATCATAGTT
rJMSF015A02-          CAAACCCTGTGTAAATTTAACAAAAAGTTGAGCAAATTCCATTTTGTCAGCATCATAGTT
JMFN002A12+           CAAACCCTGTGTAAATTTAACAAAAAGTTGAGCAAATTCCATTTTGTCAGCATCATAGTT
JMSF015A02+               CCCTGTGTAAATTTAACAAAAAGTTGAGCAAATTCCATTTTGTCAGCATCATAGTT
                      ____________________________________________________________
consensus             CAAACCCTGTGTAAATTTAACAAAAAGTTGAGCAAATTCCATTTTGTCAGCATCATAGTT
 
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JMFN013B04+           GTAGAAATCATACAGGATTGGGGTAACAATCGCCTGATGCAAAATCAGTATATAAGCACC
rJMSF015A02-          GTAGAAATCATACAGGATTGGGGTAACAATCGCCTGATGCAAAATCAGTATATAAGCACC
JMFN002A12+           GTAGAAATCATACAGGATTGGGGTAACAATCGCCTGATGCAAAATCAGTATATAAGCACC
JMSF015A02+           GTAGAAATCATACAGGATTGGGGTAACAATCGCCTGATGCAAAATCAGTATATAAGCACC
                      ____________________________________________________________
consensus             GTAGAAATCATACAGGATTGGGGTAACAATCGCCTGATGCAAAATCAGTATATAAGCACC
 
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JMFN013B04+           AAGAGAGCAGCCAAAGACAAATAGAAAGCTTCCAAGCCCTCTGATAATGATAGTACCCAG
rJMSF015A02-          AAGAGAGCAGCCAAAGACAAATAGAAAGCTTCCAAGCCCTCTGATAATGATAGTACCCAG
JMFN002A12+           AAGAGAGCAGCCAAAGACAAATAGAAAGCTTCCAAGCCCTCTGATAATGATAGTACCCAG
JMSF015A02+           AAGAGAGCAGCCAAAGACAAATAGAAAGCTTCCAAGCCCTCTGATAATGATAGTACCCAG
                      ____________________________________________________________
consensus             AAGAGAGCAGCCAAAGACAAATAGAAAGCTTCCAAGCCCTCTGATAATGATAGTACCCAG
 
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JMFN013B04+           AACTAGATGCTTCATCTCAATATGAGGAACTTGAATGCCAGTGTGATTTGAAACATGATT
rJMSF015A02-          AACTAGATGCTTCATCTCAATATGAGGAACTTGAATGCCAGTGTGATTTGAAACATGATT
JMFN002A12+           AACTAGATGCTTCATCTCAATATGAGGAACTTGAATGCCAGTGTGATTTGAAACATGATT
JMSF015A02+           AACTAGATGCTTCATCTCAATATGAGGAACTTGAATGCCAGTGTGATTTGAAACATGATT
                      ____________________________________________________________
consensus             AACTAGATGCTTCATCTCAATATGAGGAACTTGAATGCCAGTGTGATTTGAAACATGATT
 
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JMFN013B04+           TGAGAAAACATTGAACTTGGGTTTCAATGCATTGGCTGCTGCCCCGCCATCAACACCAAA
rJMSF015A02-          TGAGAAAACATTGAACTTGGGTTTCAATGCATTGGCTGCTGCCCCGCCATCAACACCAAA
JMFN002A12+           TGAGAAAACATTGAACTTGGGTTTCAATGCATTGGCTGCTGCCCCGCCATCAACACCAAA
JMSF015A02+           TGAGAAAACATTGAACTTGGGTTTCAATGCATTGGCTGCTGCCCCGCCATCAACACCAAA
                      ____________________________________________________________
consensus             TGAGAAAACATTGAACTTGGGTTTCAATGCATTGGCTGCTGCCCCGCCATCAACACCAAA
 
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JMFN013B04+           TTCATT-AACTCTTGGTACGCAGAGAGAATGAAGACCGAGACGAAGAGGAGTCTCCCGAG
rJMSF015A02-          TTCATTAAACTCTTGGTACGCAGAGAGAATGAAGACCGAGACGAAGAGGAGTCTCCCGAG
JMFN002A12+           TTCATTAAACTCTTGGTACGCAGAGAGAATGAAGACCGAGACGAAGAGGAGTCTCCCGAG
JMSF015A02+           TTCATTAAACTCTTGGTACGCAGAGAGAATGAAGACCGAGACGAAGAGGAGTCTCCCGAG
                      ____________________________________________________________
consensus             TTCATTAAACTCTTGGTACGCAGAGAGAATGAAGACCGAGACGAAGAGGAGTCTCCCGAG
 
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JMFN013B04+           GAAGGACAGGAACGCCAT                                          
rJMSF015A02-          GAAGGACAGGAACGCCATTGCAGTGCGGAAGTCTCAAATCTCTCTCTCTCTAAGATTTTC
JMFN002A12+           GAAGGACAGGAACGCCATTGCAGTGCGGAAGTCTCAAATCTCTCTCTCTCTAAGATTTTC
JMSF015A02+           GAAGGACAGGAACGCCATTGCAGTGCGGAAGTCTCAAATCTCTCTCTCTCTAAGATTTTC
                      ____________________________________________________________
consensus             GAAGGACAGGAACGCCATTGCAGTGCGGAAGTCTCAAATCTCTCTCTCTCTAAGATTTTC
 
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rJMSF015A02-          TCTCTCTAGGTAAACGGAGACAGAGATTTA                              
JMFN002A12+           TCTCTCCGGGTAAACGGAGACAGAGATTTA                              
JMSF015A02+           TCTCTCTAGGTAAACGGAGACAGAGATTTAAGACGGGAGAGAGGAGGGACGAAGATCGTC
                      ____________________________________________________________
consensus             TCTCTCTAGGTAAACGGAGACAGAGATTTAAGACGGGAGAGAGGAGGGACGAAGATCGTC