Contig 003615:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006E02Sequence446003615 (4)ref|XP_009613894.1|1e-05PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Nicotiana tomentosiformis]739003944 (3)ref|XP_009613894.1|9e-39PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Nicotiana tomentosiformis]
JMFS068A05Sequence611003615 (4)ref|XP_009613894.1|5e-11PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Nicotiana tomentosiformis]
JMSF012I17Sequence464003615 (4)ref|XP_009613894.1|2e-05PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Nicotiana tomentosiformis]722003944 (3)ref|XP_009613894.1|3e-41PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Nicotiana tomentosiformis]
JMSF014I22Sequence239003615 (4)795003944 (3)ref|XP_009613894.1|1e-47PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMFS068A05+                             ATTCATTCCCTGAACGAATNTGAGTTCCAGAGCTTTCTGTAT
                      ____________________________________________________________
consensus                               ATTCATTCCCTGAACGAATNTGAGTTCCAGAGCTTTCTGTAT
 
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JMFS068A05+           TANTCATAGTATTGAAGAGGTTGGAAAATAAAATGGTTGATCCACCACTATTGTACCGGA
                      ____________________________________________________________
consensus             TANTCATAGTATTGAAGAGGTTGGAAAATAAAATGGTTGATCCACCACTATTGTACCGGA
 
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JMFS068A05+           GCTTCCAGTACCAATATTATCAGGAGCAACTACTTCCATATTCTCAGGCAGTCTTTCTCC
                      ____________________________________________________________
consensus             GCTTCCAGTACCAATATTATCAGGAGCAACTACTTCCATATTCTCAGGCAGTCTTTCTCC
 
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JMFS068A05+           TTTATTATCTCCCTCAACACTTCTTGAATCGTCATCAAATAAAGAGCCCTCAAAATTAAC
JMFF006E02+                                   TGAATCGTCATCAAATAAAGAGCCCTCAAAATTAAC
JMSF012I17+                  TCTCCCTCAACACTTCTTGAATCGTCATCAAATAAAGAGCCCTCAAAATTAAC
                      ____________________________________________________________
consensus             TTTATTATCTCCCTCAACACTTCTTGAATCGTCATCAAATAAAGAGCCCTCAAAATTAAC
 
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JMFS068A05+           CTCATTTTCCCCAGATGAAACTCCAGTTTCAGTTCCAGAGTAATTAAATGTGGAAGCAAC
JMFF006E02+           CTCATTTTCCCCAGATGAAACTCCAGTTTCAGTTCCAGAGTAATTAAATGTGGAAGCAAC
JMSF012I17+           CTCATTTTCCCCAGATGAAACTCCAGTTTCAGTTCCAGAGTAATTAAATGTGGAAGCAAC
                      ____________________________________________________________
consensus             CTCATTTTCCCCAGATGAAACTCCAGTTTCAGTTCCAGAGTAATTAAATGTGGAAGCAAC
 
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JMFS068A05+           TCTTTTCGTTGGATTTTGCAGCTTTTGTTGGTCAATATGTTTTGCAGAATTCACTGGCAA
JMFF006E02+           TCTTTTCGTTGGATTTTGCAGCTTTTGTTGGTCAATATGTTTTGCAGAATTCACTGGCAA
JMSF012I17+           TCTTTTCGTTGGATTTTGCAGCTTTTGTTGGTCAATATGTTTTGCAGAATTCACTGGCAA
                      ____________________________________________________________
consensus             TCTTTTCGTTGGATTTTGCAGCTTTTGTTGGTCAATATGTTTTGCAGAATTCACTGGCAA
 
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JMFS068A05+           TCCATCTGGAAAATCTTCTGTCTCATTGGAAGATGAGTGAGGAAGGGATGCGCCGCAGAT
JMFF006E02+           TCCATCTGGAAAATCTTCTGTCTCATTGGAAGATGAGTGAGGAAGGGATGCGCCGCAGAT
JMSF012I17+           TCCATCTGGAAAATCTTCTGTCTCATTGGAAGATGAGTGAGGAAGGGATGCGCCGCAGAT
                      ____________________________________________________________
consensus             TCCATCTGGAAAATCTTCTGTCTCATTGGAAGATGAGTGAGGAAGGGATGCGCCGCAGAT
 
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JMFS068A05+           AAAAATAGAGGATAATGAGCGTTTGGGGGTGCGGCTGCCACTAGGACGACGCGGGCGCGA
JMFF006E02+           AAAAATAGAGGATAATGAGCGTTTGGGGGTGCGGCTGCCACTAGGACGACGCGGGCGCGA
JMSF012I17+           AAAAATAGAGGATAATGAGCGTTTGGGGGTGCGGCTGCCACTAGGACGACGCGGGCGCGA
JMSF014I22+            AAAATAGAGGATAATGAGCGTTTGGGGGTGCGGCTGCCACTAGGACGACGCGGGCGCGA
                      ____________________________________________________________
consensus             AAAAATAGAGGATAATGAGCGTTTGGGGGTGCGGCTGCCACTAGGACGACGCGGGCGCGA
 
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JMFS068A05+           GCCAAGACGGCTCTGGCTCGAACCCATCGGACCCAACACCCTCCGTGTCTGTGATCCTCT
JMFF006E02+           GCCAAGACGGCTCTGGCTCGAACCCATCGGACCCAACACCCTCCGTGTCTGTGATCCTCT
JMSF012I17+           GCCAAGACGGCTCTGGCTCGAACCCATCGGACCCAACACCCTCCGTGTCTGTGATCCTCT
JMSF014I22+           GCCAAGACGGCTCTGGCTCGAACCCATCGGACCCAACACCCTCCGTGTCTGTGATCCTCT
                      ____________________________________________________________
consensus             GCCAAGACGGCTCTGGCTCGAACCCATCGGACCCAACACCCTCCGTGTCTGTGATCCTCT
 
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JMFS068A05+           TCTTCTAGTCGACGGCGGTGGCGGATAGGAGGGCCGCGGGGGCCCGGGGTGGCGGGAGAT
JMFF006E02+           TCTTCTAGTCGACGGCGGTGGCGGATAGGAGGGCCGCGGGGGCCCGGGGTGGCGGGAGAT
JMSF012I17+           TCTTCTAGTCGACGGCGGTGGCGGATAGGAGGGCCGCGGGGGCCCGGGGTGGCGGGAGAT
JMSF014I22+           TCTTCTAGTCGACGGCGGTGGCGGATAGGAGGGCCGCGGGGGCCCGGGGTGGCGGGAGAT
                      ____________________________________________________________
consensus             TCTTCTAGTCGACGGCGGTGGCGGATAGGAGGGCCGCGGGGGCCCGGGGTGGCGGGAGAT
 
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JMFS068A05+           GGAATGGTGCTGATGGCGAAACAGAGGTG                               
JMFF006E02+           GGAATGGTGCTGATGGCGAAACAGAGGTGTCTCTGGGTGGCATCAAA             
JMSF012I17+           GGAATGGTGCTGATGGCGAAACAGAGGTGTCTCTGGGTGGCATCAAA             
JMSF014I22+           GGAATGGTGCTGATGGCGAAACAGAGGTGTCTCTGGGTGGCATCAAACACACATCTCCGA
                      ____________________________________________________________
consensus             GGAATGGTGCTGATGGCGAAACAGAGGTGTCTCTGGGTGGCATCAAACACACATCTCCGA