Contig 003613:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF016A23Sequence515003613 (5)ref|XP_009757234.1|156PREDICTED: uncharacterized protein LOC104210124 [Nicotiana sylvestris]
JMFN040C22Sequence203003613 (5)ref|XP_009757234.1|49.7PREDICTED: uncharacterized protein LOC104210124 [Nicotiana sylvestris]
JMFS005C03Sequence489003613 (5)ref|XP_009788642.1|132PREDICTED: uncharacterized protein LOC104236423 [Nicotiana sylvestris]
JMFS042H12Sequence627003613 (5)ref|XP_009757234.1|242PREDICTED: uncharacterized protein LOC104210124 [Nicotiana sylvestris]
JMSF014D02Sequence415003613 (5)ref|XP_009788642.1|70.1PREDICTED: uncharacterized protein LOC104236423 [Nicotiana sylvestris]251014989

Alignment

This contig is upended


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JMFS042H12+                                                         GTTGTGTGAAGTTA
                      ____________________________________________________________
consensus                                                           GTTGTGTGAAGTTA
 
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JMFS042H12+           GTGTCGCCGCCGCCGTTGGTGGTGGCGTGGATCAGGAGCTGNCCGCCGCTGTCGGCGTCG
                      ____________________________________________________________
consensus             GTGTCGCCGCCGCCGTTGGTGGTGGCGTGGATCAGGAGCTGNCCGCCGCTGTCGGCGTCG
 
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JMFS042H12+           CCGACGGGAAACGGGAACGTGCAGTTCACCACCACCGCCGTGTATATCCGGCCGTACCCC
                      ____________________________________________________________
consensus             CCGACGGGAAACGGGAACGTGCAGTTCACCACCACCGCCGTGTATATCCGGCCGTACCCC
 
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JMFS042H12+           CAGTCAGGNAGAATCTTCTGGCCGGCGACGGAGAGGGAATCTTGCGATTTATCCGCCGGG
JMFF016A23+                             TGGCCGGCGACGGAGAGGGAATCTTGCGATTTATCCGCCGGG
JMFS005C03+                                                                 GCCGGG
                      ____________________________________________________________
consensus             CAGTCAGGNAGAATCTTCTGGCCGGCGACGGAGAGGGAATCTTGCGATTTATCCGCCGGG
 
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JMFS042H12+           ACCCACTCGCACTCGTAACTAGGCTTTCCGAAAACGTGAAGCGGCTTAGAAGCTAATCCC
JMFF016A23+           ACCCACTCGCACTCGTAACTAGGCTTTCCGAAAACGTGAAGCGGCTT---AGCTAATCCC
JMFS005C03+           ACCCACTCGCACTCGTAACTAGGCTTT-CGAAAACGTGAAGCGGCTTAGAAGCTAATCCC
                      ____________________________________________________________
consensus             ACCCACTCGCACTCGTAACTAGGCTTTCCGAAAACGTGAAGCGGCTTAGAAGCTAATCCC
 
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JMFS042H12+           ATGACGGCGAAGGTGTTGTAGCCGCCCCTGTAGGCCGACATCAAAACAAAGTTATAAGCC
JMFF016A23+           ATGACGGCGAAGGTGTTGTAGCCGCCCCTGTAGGCCGACATCAAAACAAAGTTATAAGCC
JMFS005C03+           ATGACGGCGAAGGTGTTGTAGCCGCCCCTGTAGGCCGACATCAAAACAAAGTTATAAGCC
                      ____________________________________________________________
consensus             ATGACGGCGAAGGTGTTGTAGCCGCCCCTGTAGGCCGACATCAAAACAAAGTTATAAGCC
 
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JMFS042H12+           GCGGAGCCGACCCCGCGGAACCCCCGTTTCACGACGCCGTTTCCAAGAACCTGATCTCTC
JMFF016A23+           GCGGAGCCGACCCCGCGGAACCCCCGTTTCACGACGCCGTTTCCAAGAACCTGATCTCTC
JMFS005C03+           GCGGAGCCGACCCCGCGGAACCCCCGTTTCACGACGCCGTTTCCAAGAACCTGATCTCTC
JMSF014D02+                GCCGACCCCGCGGAACCCCCGTTTCACGACGCCGTTTCCAAGAACCTGATCTCTC
                      ____________________________________________________________
consensus             GCGGAGCCGACCCCGCGGAACCCCCGTTTCACGACGCCGTTTCCAAGAACCTGATCTCTC
 
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JMFS042H12+           TCCACCGCCACCCGCGGCGGCTGCAAGGCCGCGACGGTGGCATTCGAGACAGTGAAGTTG
JMFF016A23+           TCCACCGCCACCCGCGGCGGCTGCAAGGCCGCGACGGTGGCATTCGAGACAGTGAAGTTG
JMFS005C03+           TCCACCGCCACCCGCGGCGGCTGCAAGGCCGCGACGGTGGCATTCGAGACAGTGAAGTTG
JMSF014D02+           TCCACCGCCACCCGCGGCGGCTGCAAGGCCGCGACGGTGGCATTCGAGACAGTGAAGTTG
                      ____________________________________________________________
consensus             TCCACCGCCACCCGCGGCGGCTGCAAGGCCGCGACGGTGGCATTCGAGACAGTGAAGTTG
 
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JMFS042H12+           GACTGAAGGGCAGCGGAAAAAGACACAGCCGGCGGCGGGTTGGAAAGGCAAGAGCGCAGA
JMFF016A23+           GACTGAAGGGCAGCGGAAAAAGACACAGCCGGCGGCGGGTTGGAAAGGCAAGAGCGCAGA
JMFS005C03+           GACTGAAGGGCAGCGGAAAAAGACACAGCCGGCGGCGGGTTGGAAAGGCAAGAGCGCAGA
JMFN040C22+                                          GCGGCGGGTTGGAAAGGCAAGAGCGCAGA
JMSF014D02+           GACTGAAGGGCAGCGGAAAAAGACACAGCCGGCGGCGGGTTGGAAAGGCAAGAGCGCAGA
                      ____________________________________________________________
consensus             GACTGAAGGGCAGCGGAAAAAGACACAGCCGGCGGCGGGTTGGAAAGGCAAGAGCGCAGA
 
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JMFS042H12+           TCGGCGGCGGAGGAGAAAGTAAACCGAGCGGGGATAAACTGAAGAATAGTAATGATTGAA
JMFF016A23+           TCGGCGGCGGAGGAGAAAGTAAACCGAGCGGGGATAAACTGAAGAATAGTAATGATTGAA
JMFS005C03+           TCGGCGGCGGAGGAGAAAGTAAACCGAGCGGGGATAAACTGAAGAATAGTAATGATTGAA
JMFN040C22+           TCGGCGGCGGAGGAGAAAGTAAACCGAGCGGGGATAAACTGAAGAATAGTAATGATTGAA
JMSF014D02+           TCGGCGGCGGAGGAGAAAGTAAACCGAGCGGGGATAAACTGAAGAATAGTAATGATTGAA
                      ____________________________________________________________
consensus             TCGGCGGCGGAGGAGAAAGTAAACCGAGCGGGGATAAACTGAAGAATAGTAATGATTGAA
 
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JMFS042H12+           AAGAGGAATAACAGAGCCGTAAGAAGGATCTTGAGCTCCGCCGCGCAGTTCCACACCACC
JMFF016A23+           AAGAGGAATAACAGAGCCGTAAGAAGGATCTTGAGCTCCGCCGCGCGGTTCCACACCACC
JMFS005C03+           AAGAGGAATAACAGAGCCGTAAGAAGGATCTTGAGCTCCGCCGCGCAGTTCCACACCACC
JMFN040C22+           AAGAGGAATAAAAGAGCCGTAAGAAGGATCTTGAGCTCCGCCGCGCAGTTCCACACCACC
JMSF014D02+           AAGAGGAATAACAGAGCCGTAAGAAGGATCTTGAGCTCCGCCGCGCAGTTCCACACCACC
                      ____________________________________________________________
consensus             AAGAGGAATAACAGAGCCGTAAGAAGGATCTTGAGCTCCGCCGCGCAGTTCCACACCACC
 
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JMFS042H12+           CCGACAAACATCT                                               
JMFF016A23+           CCGACAAACATCTTCCTCTCACCGCCACCGCCACCGGCGCCGCCTTTCTCCTTA      
JMFS005C03+           CCGACAAACATCTTCCTCTCACCGCCACCGCCACCGGCGCCGCCTTTCTCCTTAAACAAC
JMFN040C22+           CCGACAAACATCTTCCTCTCACCGCCACCGCCACCGGCGCCGCCTTTCTCCTTA      
JMSF014D02+           CCGACAAACATCTTCCTCTCACCGCCACCGCCACCGGCGCCGCCTTTCTCCTTAAACAAC
                      ____________________________________________________________
consensus             CCGACAAACATCTTCCTCTCACCGCCACCGCCACCGGCGCCGCCTTTCTCCTTAAACAAC
 
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JMFS005C03+           ATTC                                                        
JMSF014D02+           ATTCTACGACACCTCCAATCCGTATTATAAAAGCTTTATCTCCAACCTCTAGAAGATCAC
                      ____________________________________________________________
consensus             ATTCTACGACACCTCCAATCCGTATTATAAAAGCTTTATCTCCAACCTCTAGAAGATCAC