Contig 003612:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF014B13Sequence492003612 (2)ref|XP_006373418.1|2e-50hypothetical protein POPTR_0017s13600g [Populus trichocarpa] gb|ERP51215.1| hypo771020335ref|XP_006482444.1|7e-23PREDICTED: uncharacterized protein At1g04910-like isoform X1 [Citrus sinensis]
JMSF029L13Sequence660003612 (2)ref|XP_011021098.1|9e-08PREDICTED: uncharacterized protein At1g04910-like [Populus euphratica]715022576ref|XP_007214999.1|1e-21hypothetical protein PRUPE_ppa002370mg [Prunus persica] gb|EMJ16198.1| hypotheti

Alignment

This contig is upended


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JMSF029L13+                     CGACTAATAGATTGCTCATTTACCGTAATTTATCACTCCACAATCTTGTT
                      ____________________________________________________________
consensus                       CGACTAATAGATTGCTCATTTACCGTAATTTATCACTCCACAATCTTGTT
 
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JMSF029L13+           GGAGTGTGGGGCCAGTGGTAGGGGTTTGGGCACCGGCTGGTCATCCTACCTAAGTGATCA
                      ____________________________________________________________
consensus             GGAGTGTGGGGCCAGTGGTAGGGGTTTGGGCACCGGCTGGTCATCCTACCTAAGTGATCA
 
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JMSF029L13+           TGATTTATCTCTACAATCTTCTCCCTAACCACAACTGCCCCACACCCTGACCCGACAAAA
                      ____________________________________________________________
consensus             TGATTTATCTCTACAATCTTCTCCCTAACCACAACTGCCCCACACCCTGACCCGACAAAA
 
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JMSF029L13+           CATTTGAGATAATGTAAATAGTCACTGGCTCAGCAGACATGACCAAATGCCGACTGGTCC
                      ____________________________________________________________
consensus             CATTTGAGATAATGTAAATAGTCACTGGCTCAGCAGACATGACCAAATGCCGACTGGTCC
 
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JMSF029L13+           CACACCCTGGCGCGACAAAGCATTTGAGATTATGTAAATAGTTACGGGCTCAGCAAACAT
                      ____________________________________________________________
consensus             CACACCCTGGCGCGACAAAGCATTTGAGATTATGTAAATAGTTACGGGCTCAGCAAACAT
 
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JMSF029L13+           GGCCAAATGCCAGTGCACAAGGGATCTGCCAACTATAATCTCCATATTGCCGCTACCAAG
                      ____________________________________________________________
consensus             GGCCAAATGCCAGTGCACAAGGGATCTGCCAACTATAATCTCCATATTGCCGCTACCAAG
 
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JMSF029L13+           ATTTGATCATTGATTTCTTCTCCCAAATACTGTCTATATGAAACAGTGAGCAAAGCACTA
                      ____________________________________________________________
consensus             ATTTGATCATTGATTTCTTCTCCCAAATACTGTCTATATGAAACAGTGAGCAAAGCACTA
 
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JMSF029L13+           GAAAGACTAAAGAAAAGATGTTTATGGGGTTGGAAGAAAAGTACCGCCTTGAGAAGGTCT
JMSF014B13+                                                       CGCCTTGAGAAGGTCT
                      ____________________________________________________________
consensus             GAAAGACTAAAGAAAAGATGTTTATGGGGTTGGAAGAAAAGTACCGCCTTGAGAAGGTCT
 
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JMSF029L13+           GCATTGTCAAAAATTCGCCGGCGGGAAGAGAAGACGGTGAGGGAAGAGTGCCGGTAGTCT
JMSF014B13+           GCATTGTCAAAAATTCGCCGGCGGGAAGAGAAGACGGTGAGGGAAGAGTGCCGGTAGTCT
                      ____________________________________________________________
consensus             GCATTGTCAAAAATTCGCCGGCGGGAAGAGAAGACGGTGAGGGAAGAGTGCCGGTAGTCT
 
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JMSF029L13+           GAAATGGCACCCAGATAAGTACGTCTAGCTAGACGAATATGGGTGAGCAGAGAGAAAGCA
JMSF014B13+           GAAATGGCACCCAGATAAGTACGTCTAGCTAGACGAATATGGGTGAGCAGAGAGAAAGCA
                      ____________________________________________________________
consensus             GAAATGGCACCCAGATAAGTACGTCTAGCTAGACGAATATGGGTGAGCAGAGAGAAAGCA
 
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JMSF029L13+           GAGACAAACAGCCCTACTAAAGCAACCAACTTCATCTTCTTCGACACCATTTTGCTCCCT
JMSF014B13+           GAGACAAACAGCCCTACTAAAGCAACCAACTTCATCTTCTTCGACACCATTTTGCTCCCT
                      ____________________________________________________________
consensus             GAGACAAACAGCCCTACTAAAGCAACCAACTTCATCTTCTTCGACACCATTTTGCTCCCT
 
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JMSF029L13+           TCGCCTCTC                                                   
JMSF014B13+           TCGCCTCTCAGTCTCCCTGGACTCGTGACAGCCCAGCATTCATAGTGAAAGAAACTAACC
                      ____________________________________________________________
consensus             TCGCCTCTCAGTCTCCCTGGACTCGTGACAGCCCAGCATTCATAGTGAAAGAAACTAACC