Contig 003610:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009C17Sequence319003610 (6)ref|XP_006356541.1|1e-07PREDICTED: wound-induced basic protein-like [Solanum tuberosum]287003610 (6)ref|XP_006356541.1|9e-08PREDICTED: wound-induced basic protein-like [Solanum tuberosum]
JMFF046H04Sequence430003610 (6)ref|XP_007199244.1|2e-07hypothetical protein PRUPE_ppa022347mg, partial [Prunus persica] gb|EMJ00443.1| 382003610 (6)ref|XP_006356541.1|2e-07PREDICTED: wound-induced basic protein-like [Solanum tuberosum]
JMFN017C12Sequence370003610 (6)ref|XP_006356541.1|1e-07PREDICTED: wound-induced basic protein-like [Solanum tuberosum]
JMSF013P16Sequence397003610 (6)ref|XP_006356541.1|2e-07PREDICTED: wound-induced basic protein-like [Solanum tuberosum]675005165 (18)emb|CBI32689.3|2e-97unnamed protein product [Vitis vinifera]

Alignment

This contig is upended


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rJMFF046H04-                                           AGCAAAATCTGTCAAATCAATTGAAGA
JMFF046H04+                                            AGCAAAATCTGTCAAATCAATTGAAGA
JMSF013P16+                                  TTTTTTTTTTAGCAAAATCTGTCAAATCAATTGAAGA
                      ____________________________________________________________
consensus                                    TTTTTTTTTTAGCAAAATCTGTCAAATCAATTGAAGA
 
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JMFF009C17+                                                  TAGAAAACAGCCCATAGTTTA
rJMFF046H04-          TTTAGTAGAAGAGTTGATCACATATACTGCAATTCAGGATAGAAAACAGCCCATAGTTTA
JMFF046H04+           TTTAGTAGAAGAGTTGATCACATATACTGCAATTCAGGATAGAAAACAGCCCATAGTTTA
JMFN017C12+              AGTAGAAGAGTTGATCACATATACTGCAATTCAGGATAGAAAACAGCCCATAGTTTA
JMSF013P16+           TTTAGTAGAAGAGTTGATCACATATACTGCAATTCAGGATAGAAAACAGCCCATAGTTTA
                      ____________________________________________________________
consensus             TTTAGTAGAAGAGTTGATCACATATACTGCAATTCAGGATAGAAAACAGCCCATAGTTTA
 
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rJMFF009C17-            TACTTGCAGCAGAATTTTCAACATCATGTTACAGCACACAGCAGATGCCAGATAGAGT
JMFF009C17+           CATACTTGCAGCAGAATTTTCAACATCATGTTACAGCACACAGCAGATGCCAGATAGAGT
rJMFF046H04-          CATACTTGCAGCAGAATTTTCAACATCATGTTACAGCACACAGCAGATGCCAGATAGAGT
JMFF046H04+           CATACTTGCAGCAGAATTTTCAACATCATGTTACAGCACACAGCAGATGCCAGATAGAGT
JMFN017C12+           CATACTTGCAGCAGAATTTTCAACATCATGTTACAGCACACAGCAGATGCCAGATAGAGT
JMSF013P16+           CATACTTGCAGCAGAATTTTCAACATCATGTTACAGCACACAGCAGATGCCAGATAGAGT
                      ____________________________________________________________
consensus             CATACTTGCAGCAGAATTTTCAACATCATGTTACAGCACACAGCAGATGCCAGATAGAGT
 
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rJMFF009C17-          TCAAAACAGTTTATTAACAACTTCAAAAGCATTCTATAATGCCTGGATTTGCATACATCA
JMFF009C17+           TCAAAACAGTTTATTAACAACTTCAAAAGCATTCTATAATGCCTGGATTTGCATACATCA
rJMFF046H04-          TCAAAACAGTTTATTAACAACTTCAAAAGCATTCTATAATGCCTGGATTTGCATACATCA
JMFF046H04+           TCAAAACAGTTTATTAACAACTTCAAAAGCATTCTATAATGCCTGGATTTGCATACATCA
JMFN017C12+           TCAAAACAGTTTATTAACAACTTCAAAAGCATTCTATAATGCCTGGATTTGCATACATCA
JMSF013P16+           TCAAAACAGTTTATTAACAACTTCAAAAGCATTCTATAATGCCTGGATTTGCATACATCA
                      ____________________________________________________________
consensus             TCAAAACAGTTTATTAACAACTTCAAAAGCATTCTATAATGCCTGGATTTGCATACATCA
 
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rJMFF009C17-          GGAAGCTATTATTCATTCATAACAGGCTTGTTTTCATTCGCTTTAGGCTTCTGTTCCTTT
JMFF009C17+           GGAAGCTATTATTCATTCATAACAGGCTTGTTTTCATTCGCTTTAGGCTTCTGTTCCTTT
rJMFF046H04-          GGAAGCTATTATTCATTCATAACAGGCTTGTTTTCATTCGCTTTAGGCTTCTGTTCCTTT
JMFF046H04+           GGAAGCTATTATTCATTCATAACAGGCTTGTTTTCATTCGCTTTAGGCTTCTGTTCCTTT
JMFN017C12+           GGAAGCTATTATTCATTCATAACAGGCTTGTTTTCATTCGCTTTAGGCTTCTGTTCCTTT
JMSF013P16+           GGAAGCTATTATTCATTCATAACAGGCTTGTTTTCATTCGCTTTAGGCTTCTGTTCCTTT
                      ____________________________________________________________
consensus             GGAAGCTATTATTCATTCATAACAGGCTTGTTTTCATTCGCTTTAGGCTTCTGTTCCTTT
 
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rJMFF009C17-          GGCTTTTGCTCTTCAGTTTTCCTCTTATCGGAACCGCCTCCTTTCTGGCTGAGAAACGAG
JMFF009C17+           GGCTTTTGCTCTTCAGTTTTCCTCTTATCGGAACCGCCTCCTTTCTGGCTGAGAAACGAG
rJMFF046H04-          GGCTTTTGCTCTTCAGTTTTCCTCTTATCGGAACCGCCTCCTTTCTGGCTGAGAAACGAG
JMFF046H04+           GGCTTTTGCTCTTCAGTTTTCCTCTTATCGGAACCGCCTCCTTTCTGGCTGAGAAACGAG
JMFN017C12+           GGCTTTTGCTCTTCAGTTTTCCTCTTATCGGAACCGCCTCCTTTCTGGCTGAGAAACGAG
JMSF013P16+           GGCTTTTGCTCTTCAGTTTTCCTCTTATCGGAACCGCCTCCTTTCTGGCTGAGAAACGAG
                      ____________________________________________________________
consensus             GGCTTTTGCTCTTCAGTTTTCCTCTTATCGGAACCGCCTCCTTTCTGGCTGAGAAACGAG
 
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rJMFF009C17-          CGGAACAGCGGCGAGTTGACGTCGTAAATCATTGTCACTGTGCGAAGTT           
JMFF009C17+           CGGAACAGCGGCGAGTTGACGTCGTAAATCATTGTCACTGTGCGAAGTT           
rJMFF046H04-          CGGAACAGCGGCGAGTTGACGTCGTAAATCATTGTCACTGTGCGAAGTTCGTCGT     
JMFF046H04+           CGGAACAGCGGCGAGTTGACGTCGTAAATCAT                            
JMFN017C12+           CGGAACAGCGGCGAGTTGACGTCGTAAATCAT                            
JMSF013P16+           CGGAACAGCGGCGAGTTGACGTCGTAAATCATTGTCACTGTGCGAAGTTCGTCGTCCGCC
                      ____________________________________________________________
consensus             CGGAACAGCGGCGAGTTGACGTCGTAAATCATTGTCACTGTGCGAAGTTCGTCGTCCGCC