Contig 003608:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006K16Sequence555003608 (3)ref|XP_011072744.1|8e-19PREDICTED: GATA transcription factor 28 [Sesamum indicum]730014808ref|XP_007023733.1|1e-64ZIM-like 1 [Theobroma cacao] gb|EOY26355.1| ZIM-like 1 [Theobroma cacao]
JMFF046E21Sequence621003608 (3)ref|XP_011072744.1|4e-22PREDICTED: GATA transcription factor 28 [Sesamum indicum]611009811 (2)ref|XP_007023733.1|5e-42ZIM-like 1 [Theobroma cacao] gb|EOY26355.1| ZIM-like 1 [Theobroma cacao]
JMSF013M20Sequence489003608 (3)749009811 (2)gb|KDO41401.1|9e-10hypothetical protein CISIN_1g022728mg [Citrus sinensis]

Alignment

This contig is upended


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JMFF046E21+                                                         GGAGCAGTGGGGAG
                      ____________________________________________________________
consensus                                                           GGAGCAGTGGGGAG
 
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JMFF046E21+           CCCTCTATAATTGTGATTGTNATAGGCATAGGGGTGGTTGGAGGGACCTCGCGGCCACCA
JMFF006K16+                                                                     CA
                      ____________________________________________________________
consensus             CCCTCTATAATTGTGATTGTNATAGGCATAGGGGTGGTTGGAGGGACCTCGCGGCCACCA
 
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JMFF046E21+           AGTAATAAGAGCACAGCTTGCACCTTATCAGGAGACACAGAATCAAACACATAGACCTGC
JMFF006K16+           AGTAATAAGAGCACAGCTTGCACCTTATCAGGAGACACAGAATCAAACACATAGACCTGC
                      ____________________________________________________________
consensus             AGTAATAAGAGCACAGCTTGCACCTTATCAGGAGACACAGAATCAAACACATAGACCTGC
 
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JMFF046E21+           CCCTGGAACGAGAGGGTCAGCTGATTACTACTTTCATTGCCTCCATGAACTACAATTGGA
JMFF006K16+           CCCTGGAACGAGAGGGTCAGCTGATTACTACTTTCATTGCCTCCATGAACTACAATTGGA
JMSF013M20+                                                    TCCATGAACTACAATTGGA
                      ____________________________________________________________
consensus             CCCTGGAACGAGAGGGTCAGCTGATTACTACTTTCATTGCCTCCATGAACTACAATTGGA
 
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JMFF046E21+           CCATGATTATCTGACAGGTTCCCTGGATCAGCAGCAGCAACATCGCCTTCCATACATTCG
JMFF006K16+           CCATGATTATCTGACAGGTTCCCTGGATCAGCAGCAGCAACATCGCCTTCCATACATTCG
JMSF013M20+           CCATGATTATCTGACAGGTTCCCTGGATCAGCAGCAGCAACATCGCCTTCCATACATTCG
                      ____________________________________________________________
consensus             CCATGATTATCTGACAGGTTCCCTGGATCAGCAGCAGCAACATCGCCTTCCATACATTCG
 
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JMFF046E21+           CTGTCACCGCTCCCTCCATTTCCACCACCATTATCATCATGCTCATCATGGTCCATCACA
JMFF006K16+           CTGTCACCGCTCCCTCCATTTCCACCACCATTATCATCATGCTCATCATGGTCCATCACA
JMSF013M20+           CTGTCACCGCTCCCTCCATTTCCACCACCATTATCATCATGCTCATCATGGTCCATCACA
                      ____________________________________________________________
consensus             CTGTCACCGCTCCCTCCATTTCCACCACCATTATCATCATGCTCATCATGGTCCATCACA
 
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JMFF046E21+           TTCCCATTGCTCATAAAACCATGGTGATGGTGATCATCGTGCTCCGGCAGGTAATGAACT
JMFF006K16+           TTCCCATTGCTCATAAAACCATGGTGATGGTGATCATCGTGCTCCGGCAGGTAATGAACT
JMSF013M20+           TTCCCATTGCTCATAAAACCATGGTGATGGTGATCATCGTGCTCCGGCAGGTAATGAACT
                      ____________________________________________________________
consensus             TTCCCATTGCTCATAAAACCATGGTGATGGTGATCATCGTGCTCCGGCAGGTAATGAACT
 
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JMFF046E21+           TGAGGGTGCTGCTGCATCACCCCATCTTCACTCCCTCCAATCCCTTCCATTTCACGCCAA
JMFF006K16+           TGAGGGTGCTGCTGCATCACCCCATCTTCACTCCCTCCAATCCCTTCCATTTCACGCCAA
JMSF013M20+           TGAGGGTGCTGCTGCATCACCCCATCTTCACTCCCTCCAATCCCTTCCATTTCACGCCAA
                      ____________________________________________________________
consensus             TGAGGGTGCTGCTGCATCACCCCATCTTCACTCCCTCCAATCCCTTCCATTTCACGCCAA
 
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JMFF046E21+           GTACACAACTTTATACACCTGTATTGAACATTCAATAGAAAGTCAGTGAGATTCGATCGC
JMFF006K16+           GTACACAACTTTATACACCTGTATTGAACATTCAATAGAAAGTCAGTGAGATTCGATCGC
JMSF013M20+           GTACACAACTTTATACAC----------CATTCAATAGAAAGTCAGTGAGATTCGATCGC
                      ____________________________________________________________
consensus             GTACACAACTTTATACACCTGTATTGAACATTCAATAGAAAGTCAGTGAGATTCGATCGC
 
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JMFF046E21+           GGTCGACTGAGAATTGACGGTCCGTACTGTACGATTTTTGACCGGAGATACGTTAGCGGG
JMFF006K16+           GGTCGACTGAGAATTGACGGTCCGTACTGTACGATTTTTGACCGGAGATACGTTAGCGGG
JMSF013M20+           GGTCGACTGAGAATTGACGGTCCGTACTGTACGATTTTTGACCGGAGATACGTTAGCGGG
                      ____________________________________________________________
consensus             GGTCGACTGAGAATTGACGGTCCGTACTGTACGATTTTTGACCGGAGATACGTTAGCGGG
 
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JMFF046E21+           AAGCTTTTTGGTTTGGTCGCCGGCGGGGATTGGGAAGATCGGTGAAATGGACGGTGCGGA
JMFF006K16+           AAGCTTTTTGGTTTGGTCGCCGGCGGGGATTGGGAAGATCGGTGAAATGGACGGTGCGGA
JMSF013M20+           AAGCTTTTTGGTTTGGTCGCCGGCGGGGATTGGGAAGATCGGTGAAATGGACGGTGCGGA
                      ____________________________________________________________
consensus             AAGCTTTTTGGTTTGGTCGCCGGCGGGGATTGGGAAGATCGGTGAAATGGACGGTGCGGA
 
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JMFF046E21+           TTAGATT                                                     
JMFF006K16+           TTAGATT                                                     
JMSF013M20+           TTAGATTGGAACTGGGTCGAGCGTGATGAATGGGAGTTTTCTGTAAATTCTAGGGCTTCC
                      ____________________________________________________________
consensus             TTAGATTGGAACTGGGTCGAGCGTGATGAATGGGAGTTTTCTGTAAATTCTAGGGCTTCC