Contig 003607:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF013J16Sequence497003607 (3)772001317 (2)ref|XP_009631768.1|1e-108PREDICTED: E3 ubiquitin-protein ligase RNF5-like [Nicotiana tomentosiformis]
JMSF014E08Sequence311003607 (3)725001317 (2)
JMSF014J16Sequence499003607 (3)

Alignment

This contig is upended


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JMSF014J16+                                                    GTTTCTACACACACAACAG
JMSF013J16+                                                      TTCTACACACACACCAG
                      ____________________________________________________________
consensus                                                      GTTTCTACACACACACCAG
 
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JMSF014J16+           TGTAGCAGCTCCAGACTTGCACAACAAAAGGTAGCTATCCACTATTAGCTAGAGTTAAGT
JMSF013J16+           TGTAGCAGCTCCAGACTTGCACAACAAAAGGTAGCTATCCATTATTAGCTAGAGTTAAGT
                      ____________________________________________________________
consensus             TGTAGCAGCTCCAGACTTGCACAACAAAAGGTAGCTATCCATTATTAGCTAGAGTTAAGT
 
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JMSF014J16+           TTATTTCCAACAACCGATCTAACAAATCTCGAAAAATTCCGCGGAAACCACACCAAATTT
JMSF013J16+           TTATTTCCAACAACCGATCTAACAAATCTCGAAAAATTCCGCGGAAACCACACCAAATTT
                      ____________________________________________________________
consensus             TTATTTCCAACAACCGATCTAACAAATCTCGAAAAATTCCGCGGAAACCACACCAAATTT
 
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JMSF014J16+           ACACTCAAAGGAAGAAGACAGATTCTGTATAATAAATAGTTACAAAGAGAAGCAATTGCT
JMSF014E08+                                                            AAGCCATTGCT
JMSF013J16+           ACACTCAAAGGAAGAAGACAGATTCTGTATAATAAATAGTTACAAAGAGAAGCAATTGCT
                      ____________________________________________________________
consensus             ACACTCAAAGGAAGAAGACAGATTCTGTATAATAAATAGTTACAAAGAGAAGCAATTGCT
 
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JMSF014J16+           AGTATTACCATCAGCAAACTAAGAGAAAGTAGACGGATCCAGATTTCAACAGATATCCAG
JMSF014E08+           AGTATTNCCATCAGCAAACTAAGAGAAAGTAGACGGATCCAGATTTCAACAGATATCCAG
JMSF013J16+           AGTATTACCATCAGCAAACTAAGAGAAAGTAGACGGATCCAGATTTCAACAGATATCCAG
                      ____________________________________________________________
consensus             AGTATTACCATCAGCAAACTAAGAGAAAGTAGACGGATCCAGATTTCAACAGATATCCAG
 
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JMSF014J16+           AAAGGAAAGATAATAANCAATACAGATCTAAGTATATAACCACTGATCAGATAATAATAA
JMSF014E08+           AAAGGAAAGATAATAAACAATACAGATCTAAGTATATAACCACTGATCAGATAATAATAA
JMSF013J16+           AAAGGAAAGATAATAAACAATACAGATCTAAGTATATAACCACTGATCAGATAATAATAA
                      ____________________________________________________________
consensus             AAAGGAAAGATAATAAACAATACAGATCTAAGTATATAACCACTGATCAGATAATAATAA
 
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JMSF014J16+           GATCGAATCGAATCATNCAAGATACGCGGGTGTGCGCAGAGAGGTATAGAGAGGGATAGA
JMSF014E08+           GATCGAATCGAATCATACAAGATACGCGGGTGTGCGCAGAGAGGTATAGAGAGGGATAGA
JMSF013J16+           GATCGAATCGAATCATACAAGATACGCGGGTGTGCGCAGAGAGGTATAGAGAGGGATAGA
                      ____________________________________________________________
consensus             GATCGAATCGAATCATACAAGATACGCGGGTGTGCGCAGAGAGGTATAGAGAGGGATAGA
 
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JMSF014J16+           CGGGGATCTNAATGGCGCCACTTACTACTTGTTGATCCGAATTCCAAAAGCGGAAAGTGT
JMSF014E08+           CGGGGATCTAAATGGCGCCACTTACTACTTGTTGATCCGAATTCCAAAAGCGGAAAGTGT
JMSF013J16+           CGGGGATCTAAATGGCGCCACTTACTACTTGTTGATCCGAATTCCAAAAGCGGAAAGTGT
                      ____________________________________________________________
consensus             CGGGGATCTAAATGGCGCCACTTACTACTTGTTGATCCGAATTCCAAAAGCGGAAAGTGT
 
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JMSF014J16+           TTGGAGGGAATGGAGGAGTCGCAGACGGATAGAGAGACAGNTGAGACAAAATGGAAAATC
JMSF014E08+           TTGGAGGGAATGGAGGAGTCGCAGACGGATAGAGAGACAGCTGAGACAAAATGGAAAATC
JMSF013J16+           TTGGAGGGAATGGAGGAGTCGCAGACGGATAGAGAGACAGCTGAGACAAAATGGAAAATC
                      ____________________________________________________________
consensus             TTGGAGGGAATGGAGGAGTCGCAGACGGATAGAGAGACAGCTGAGACAAAATGGAAAATC