| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS013G03 | Sequence | 620 | 003606 (6) | emb|CDP07116.1| | 3e-58 | unnamed protein product [Coffea canephora] | |||||
| JMFS127G01 | Sequence | 618 | 003606 (6) | ref|XP_010253662.1| | 4e-77 | PREDICTED: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, chloroplastic | |||||
| JMSF013J02 | Sequence | 486 | 003606 (6) | ref|XP_009592136.1| | 1e-09 | PREDICTED: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, chloroplastic | 663 | 004794 (6) | gb|EPS62642.1| | 1e-101 | hypothetical protein M569_12144, partial [Genlisea aurea] |
| JMSF027L21 | Sequence | 655 | 003606 (6) | ref|XP_009592136.1| | 1e-79 | PREDICTED: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, chloroplastic | 666 | 004794 (6) | gb|EPS62642.1| | 8e-102 | hypothetical protein M569_12144, partial [Genlisea aurea] |
| JMSF034B06 | Sequence | 689 | 003606 (6) | emb|CDP07116.1| | 5e-58 | unnamed protein product [Coffea canephora] | 708 | 004794 (6) | ref|XP_009797237.1| | 5e-122 | PREDICTED: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, chloroplastic- |
| JMSF051H22 | Sequence | 693 | 003606 (6) | ref|XP_009592136.1| | 8e-94 | PREDICTED: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, chloroplastic | 710 | 004794 (6) | gb|EPS62642.1| | 9e-98 | hypothetical protein M569_12144, partial [Genlisea aurea] |
This contig is upended
. : . : . : . : . : . :
JMFS127G01+ ATGAATGTCCGCAACCA
JMSF051H22+ GAAGAGCAACTGAAGGAGCAAAATGAATGTCCGCAACCA
____________________________________________________________
consensus GAAGAGCAACTGAAGGAGCAAAATGAATGTCCGCAACCA
. : . : . : . : . : . :
JMFS127G01+ GAGGAATATTATAATTCTTCTGAACAAGAGAATTTTTAATTTCAAAGCATGCATCGGCTT
JMSF027L21+ TCTGAACAAGAGAATTTTTAATTTCAAAGCATGCATCGGCTT
JMSF051H22+ GAGGAATATTATAATTCTTCTGAACAAGAGAATTTTTAATTTCAAAGCATGCATCGGCTT
____________________________________________________________
consensus GAGGAATATTATAATTCTTCTGAACAAGAGAATTTTTAATTTCAAAGCATGCATCGGCTT
. : . : . : . : . : . :
JMFS127G01+ CTTTCTTGCCTTGCACCGTTATGCGGACAATGTCAGCTCCAGTATCAGCTATTTTCATTA
JMSF027L21+ CTTTCTTGCCTTGCACCGTTATGCGGACAATGTCAGCTCCAGTATCAGCTATTTTCATTA
JMSF051H22+ CTTTCTTGCCTTGCACCGTTATGCGGACAATGTCAGCTCCAGTATCAGCTATTTTCATTA
JMFS013G03+ CAGTATCAGCTATTTTCATTA
JMSF034B06+ TCATTA
____________________________________________________________
consensus CTTTCTTGCCTTGCACCGTTATGCGGACAATGTCAGCTCCAGTATCAGCTATTTTCATTA
. : . : . : . : . : . :
JMFS127G01+ CCTGTTCAACTGTTCCAGCAACATCCTTGGTATCTGTGGTGGTCATAGTTTGGATTCTTA
JMSF027L21+ CCTGTTCAACTGTTCCAGCAACATCCTTGGTATCTGTGGTGGTCATAGTTTGGATTCTTA
JMSF051H22+ CCTGTTCAACTGTTCCAGCAACATCCTTGGTATCTGTGGTGGTCATAGTTTGGATTCTTA
JMFS013G03+ CCTGTTCAACTGTTCCAGCAACATCCTTGGTATCTGTGGTGGTCATAGTTGGATTTCTTA
JMSF034B06+ CCTGTTCAACTGTTCCAGCAACATCCTTGGTATCTGTGGTGGTCATAGTTTGGATTCTTA
____________________________________________________________
consensus CCTGTTCAACTGTTCCAGCAACATCCTTGGTATCTGTGGTGGTCATAGTTTGGATTCTTA
. : . : . : . : . : . :
JMFS127G01+ TAGGATGTTCGCTACCAAGGGCCACATTTCCAACCATCACAGTGCGGGTTTTTCTCCGCA
JMSF027L21+ TAGGATGTTCGCTACCAAGGGCCACATTTCCAACCATCACAGTGCGGGTTTTTCTCCGCA
JMSF051H22+ TAGGATGTTCGCTACCAAGGGCCACATTTCCAACCATCACAGTGCGGGTTTTTCTCCGCA
JMFS013G03+ TAGGATGTTCGCTACCAAGGGCCACATTTCCAACCATCACAGTGCGGGTTTTTCTCCGCA
JMSF034B06+ TAGGATGTTCGCTACCAAGGGCCACATTTCCAACCATCACAGTGCGGGTTTTTCTCCGCA
____________________________________________________________
consensus TAGGATGTTCGCTACCAAGGGCCACATTTCCAACCATCACAGTGCGGGTTTTTCTCCGCA
. : . : . : . : . : . :
JMFS127G01+ CAGTTTTGTGTATATGTTCACAATATTTCTGCCTAGGTACTAGCAGTGGACTCCCTTCTG
JMSF027L21+ CAGTTTTGTGTATATGTTCACAATATTTCTGCCTAGGTACTAGCAGTGGACTCCCTTCTG
JMSF051H22+ CAGTTTTGTGTATATGTTCACAATATTTCTGCCTAGGTACTAGCAGTGGACTCCCTTCTG
JMFS013G03+ CAGTTTTGTGTATATGTTCACAATATTTCTGCCTAGGTACTAGCAGTGGACTCCCTTCTG
JMSF034B06+ CAGTTTTGTGTATATGTTCACAATATTTCTGCCTAGGTACTAGCAGTGGACTCCCTTCTG
____________________________________________________________
consensus CAGTTTTGTGTATATGTTCACAATATTTCTGCCTAGGTACTAGCAGTGGACTCCCTTCTG
. : . : . : . : . : . :
JMFS127G01+ ATGCAGGCTGAACCTCAACAGAACTGGAATTTCTGATCACACAAACCTTGCTTCTGCGAG
JMSF027L21+ ATGCAGGCTGAACCTCAACAGAACTGGAATTTCTGATCACACAAACCTTGCTTCTGCGAG
JMSF051H22+ ATGCAGGCTGAACCTCAACAGAACTGGAATTTCTGATCACACAAACCTTGCTTCTGCGAG
JMFS013G03+ ATGCAGGCTGAACCTCAACAGAACTGGAATTTCTGATCACACAAACCTTGCTTCTGCGAG
JMSF034B06+ ATGCAGGCTGAACCTCAACAGAACTGGAATTTCTGATCACACAAACCTTGCTTCTGCGAG
JMSF013J02+ TGCGAG
____________________________________________________________
consensus ATGCAGGCTGAACCTCAACAGAACTGGAATTTCTGATCACACAAACCTTGCTTCTGCGAG
. : . : . : . : . : . :
JMFS127G01+ ACTTAACCCTCTGCATGTCAGAAACTCTAACAAAATCC--ATTTTTTCCAAACCCCAATC
JMSF027L21+ ACTTAACCCTCTGCATGTCAGAAACTCTAACAAAATCCATATTTTTTCCAAACCCCAATC
JMSF051H22+ ACTTAACCCTCTGCATGTCAGAAACTCTAACAAAATCCATATTTTTTCCAAACCCCAATC
JMFS013G03+ ACTTAACCCTCTGCATGTCAGAAACTCTAACAAAATCCATATTTTTTCCAAACCCCAATC
JMSF034B06+ ACTTAACCCTCTGCATGTCAGAAACTCTAACAAAATCCATATTTTTTCCAAACCCCAATC
JMSF013J02+ ACTTAACCCTCTGCATGTCAGAAACTCTAACAAAATCCATATTTTTTCCAAACCCCAATC
____________________________________________________________
consensus ACTTAACCCTCTGCATGTCAGAAACTCTAACAAAATCCATATTTTTTCCAAACCCCAATC
. : . : . : . : . : . :
JMFS127G01+ CATTTTCCCTGCCTTTCAGCCCCGCAAATGAAACAGGAACTGCTCCAGTTGCCATTCTTC
JMSF027L21+ CATTTTCCCTGCCTTTCAGCCCCGCAAATGAAACAGGAACTGCTCCAGTTGCCATTCTTC
JMSF051H22+ CATTTTCCCTGCCTTTCAGCCCCGCAAATGAAACAGGAACTGCTCCAGTTGCCATTCTTC
JMFS013G03+ CATTTTCCCTGCCTTTCAGCCCCGCAAATGAAACAGGAACTGCTCCAGTTGCCATTCTTC
JMSF034B06+ CATTTTCCCTGCCTTTCAGCCCCGCAAATGAAACAGGAACTGCTCCAGTTGCCATTCTTC
JMSF013J02+ CATTTTCCCTGCCTTTCAGCCCCGCAAATGAAACAGGAACTGCTCCAGTTGCCATTCTTC
____________________________________________________________
consensus CATTTTCCCTGCCTTTCAGCCCCGCAAATGAAACAGGAACTGCTCCAGTTGCCATTCTTC
. : . : . : . : . : . :
JMFS127G01+ CCCAAAATGCAAATCCTCACAATTC
JMSF027L21+ CCCAAAATGCAAATCCTCACAATTC
JMSF051H22+ CCCAAAATGCAAATCCTCACAATTCT
JMFS013G03+ CCCAAAATGCAAATCCTCACAATTCTAAACCGCAAAGAAAAGCAAAACAATAAAACTATA
JMSF034B06+ CCCAAAATGCAAATCCTCACAATTCTAAACCGCAAAGAAAAGCAAAACAATAAAACTATA
JMSF013J02+ CCCAAAATGCAAATCCTCACAATTCTAAACCGCAAAGAAAAGCAAAACAATAAAACTATA
____________________________________________________________
consensus CCCAAAATGCAAATCCTCACAATTCTAAACCGCAAAGAAAAGCAAAACAATAAAACTATA
. : . : . : . : . : . :
JMFS013G03+ ATCAATTCACAATCTCCAAAACCTCAGTTCTGTTTGGGTGTAGAAACCAAATAACAAAAG
JMSF034B06+ ATCAATTCACAATCTCCAAAACCTCAGTTCTGTTTGGGTGTAGAAACCAAATAACAAAAG
JMSF013J02+ ATCAATTCACAATCTCCAAAACCTCAGTTCTGTTTGGGTGTAGAAACCAAATAACAAAAG
____________________________________________________________
consensus ATCAATTCACAATCTCCAAAACCTCAGTTCTGTTTGGGTGTAGAAACCAAATAACAAAAG
. : . : . : . : . : . :
JMFS013G03+ CAGCCAAAGAATCGATCTTTGAACACAATCAAACTGTTCTCGATTGCATTCCGGACAAAC
JMSF034B06+ CAGCCAAAGAATCGATCTTTGAACACAATCAAACTGTTCTCGATTGCATTCCGGACAAAC
JMSF013J02+ CAGCCAAAGAATCGATCTTTGAACACAATCAAACTGTTCTCGATTGCATTCCGGACAAAC
____________________________________________________________
consensus CAGCCAAAGAATCGATCTTTGAACACAATCAAACTGTTCTCGATTGCATTCCGGACAAAC
. : . : . : . : . : . :
JMFS013G03+ CAATACCCAATCAAGAACAGAAATTCGCTCAGCGAAAGCTTGGTA
JMSF034B06+ CAATACCCAATCAAGAACAGAAATTCGCTCAGCGAAAGCTTGGTAACACTGCACTTGCCT
JMSF013J02+ CAATACCCAATCAAGAACAGAAATTCGCTCAGCGAAAGCTTGGTAACACTGCACTTGCCT
____________________________________________________________
consensus CAATACCCAATCAAGAACAGAAATTCGCTCAGCGAAAGCTTGGTAACACTGCACTTGCCT
. : . : . : . : . : . :
JMSF034B06+ TTAATCACAAAGGTGGGTAAAAGGATTCAAGAGGACGGAATTTGAAAGGGCCGTGGAAGA
JMSF013J02+ TTAATCACAAAGGTGGGTAAAAGGATTCAAGAGGACGGAATTTGAAAGGGCCGTGGAAGA
____________________________________________________________
consensus TTAATCACAAAGGTGGGTAAAAGGATTCAAGAGGACGGAATTTGAAAGGGCCGTGGAAGA
. : . : . : . : . : . :
JMSF034B06+ AAGTTTTTGTTTCGCAAAAAAC
JMSF013J02+ AAGTTTTTGTTTCGCAAAAAACAAGGTAAAAATGGGAAATTGGAGTGTTAAATGCACACC
____________________________________________________________
consensus AAGTTTTTGTTTCGCAAAAAACAAGGTAAAAATGGGAAATTGGAGTGTTAAATGCACACC