| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS065D06 | Sequence | 624 | 003595 (5) | ref|XP_009612912.1| | 1e-107 | PREDICTED: structural maintenance of chromosomes protein 5 isoform X1 [Nicotian | |||||
| JMFS142A07 | Sequence | 622 | 003595 (5) | ref|XP_009612912.1| | 1e-104 | PREDICTED: structural maintenance of chromosomes protein 5 isoform X1 [Nicotian | |||||
| JMSF012J13 | Sequence | 510 | 003595 (5) | emb|CAN82944.1| | 3e-73 | hypothetical protein VITISV_027872 [Vitis vinifera] | |||||
| JMSF031D04 | Sequence | 611 | 003595 (5) | ref|XP_009612912.1| | 1e-97 | PREDICTED: structural maintenance of chromosomes protein 5 isoform X1 [Nicotian | 732 | 010010 (2) | ref|XP_006369613.1| | 2e-86 | hypothetical protein POPTR_0001s269802g [Populus trichocarpa] gb|ERP66182.1| hyp |
| JMSF032H09 | Sequence | 674 | 003595 (5) | ref|XP_009612912.1| | 6e-111 | PREDICTED: structural maintenance of chromosomes protein 5 isoform X1 [Nicotian | 687 | 010010 (2) | ref|XP_006369613.1| | 6e-100 | hypothetical protein POPTR_0001s269802g [Populus trichocarpa] gb|ERP66182.1| hyp |
This contig is upended
. : . : . : . : . : . :
JMSF032H09+ CTCTTAGTAATAAGTGA
____________________________________________________________
consensus CTCTTAGTAATAAGTGA
. : . : . : . : . : . :
JMFS065D06+ TGACAGGCAACCGAGGATCACCCACAGCTTTTTCGGTCTCTTCAAGAAGTTG
JMFS142A07+ CGAGGATCACCCACAGCTTTTTCGGTCTCTTCAAGAAGTTG
JMSF032H09+ ACTATGCATGACAGGCAACCGAGGATCACCCACAGCTTTTTCGGTCTCTTCAAGAAGTTG
JMSF031D04+ TCTTCAAGAAGTTG
____________________________________________________________
consensus ACTATGCATGACAGGCAACCGAGGATCACCCACAGCTTTTTCGGTCTCTTCAAGAAGTTG
. : . : . : . : . : . :
JMFS065D06+ AACTGGAGTCAACTTAGCAAACTCGCAGACCCTGTCTTGTGGTAGAAATTGAGTCAAGTT
JMFS142A07+ AACTGGAGTCAACTTAGCAAACTCGCAGACCCTGTCTTGTGGTAGAAATTGAGTCAAGTT
JMSF032H09+ AACTGGAGTCAACTTAGCAAACTCGCAGACCCTGTCTTGTGGTAGAAATTGAGTCAAGTT
JMSF031D04+ AACTGGAGTCAACTTAGCAAACTCGCAGACCCTGTCTTGTGGTAGAAATTGAGTCAAGTT
____________________________________________________________
consensus AACTGGAGTCAACTTAGCAAACTCGCAGACCCTGTCTTGTGGTAGAAATTGAGTCAAGTT
. : . : . : . : . : . :
JMFS065D06+ GTTCACTTGGATATTGTATCTTTTAATGATTTCAAGTACATGCTTTTTGGGCACAACTTT
JMFS142A07+ GTTCACTTGGATATTGTATCTTTTAATGATTTCAAGTACATGCTTTTTGGGCACAACTTT
JMSF032H09+ GTTCACTTGGATATTGTATCTTTTAATGATTTCAAGTACATGCTTTTTGGGCACAACTTT
JMSF031D04+ GTTCACTTGGATATTGTATCTTTTAATGATTTCAAGTACATGCTTTTTGGGCACAACTTT
JMSF012J13+ TTCAAGTACATGCTTTTTGGGCACAACTTT
____________________________________________________________
consensus GTTCACTTGGATATTGTATCTTTTAATGATTTCAAGTACATGCTTTTTGGGCACAACTTT
. : . : . : . : . : . :
JMFS065D06+ CCCATTAAATAACCACTCAGACTTGTTTTTGGCATCTATCTTCCGCATGATGGTGATTAA
JMFS142A07+ CCCATTAAATAACCACTCAGACTTGTTTTTGGCATCTATCTTCCGCATGATGGTGATTAA
JMSF032H09+ CCCATTAAATAACCACTCAGACTTGTTTTTGGCATCTATCTTCCGCATGATGGTGATTAA
JMSF031D04+ CCCATTAAATAACCACTCAGACTTGTTTTTGGCATCTATCTTCCGCATGATGGTGATTAA
JMSF012J13+ CCCATTAAATAACCACTCAGACTTGTTTTTGGCATCTATCTTCCGCATGATGGTGATTAA
____________________________________________________________
consensus CCCATTAAATAACCACTCAGACTTGTTTTTGGCATCTATCTTCCGCATGATGGTGATTAA
. : . : . : . : . : . :
JMFS065D06+ CTCCTCCTTAGTGTCCCCTCTCAAGGATATTTTAATGTAACCATTATCTTCCCCACGCTT
JMFS142A07+ CTCCTCCTTAGTGTCCCCTCTCAAGGATATTTTAATGTAACCATTATCTTCCCCACGCTT
JMSF032H09+ CTCCTCCTTAGTGTCCCCTCTCAAGGATATTTTAATGTAACCATTATCTTCCCCACGCTT
JMSF031D04+ CTCCTCCTTAGTGTCCCCTCTCAAGGATATTTTAATGTAACCATTATCTTCCCCACGCTT
JMSF012J13+ CTCCTCCTTAGTGTCCCCTCTCAAGGATATTTTAATGTAACCATTATCTTCCCCACGCTT
____________________________________________________________
consensus CTCCTCCTTAGTGTCCCCTCTCAAGGATATTTTAATGTAACCATTATCTTCCCCACGCTT
. : . : . : . : . : . :
JMFS065D06+ TACAAAGGCTCCAATACTAGAAGCCCTTCCCAAAAGCTGAGGCTCCCCACCAAGACCAAG
JMFS142A07+ TACAAAGGCTCCAATACTAGAAGCCCTTCCCAAAAGCTGAGGCTCCCCACCAAGACCAAG
JMSF032H09+ TACAAAGGCTCCAATACTAGAAGCCCTTCCCAAAAGCTGAGGCTCCCCACCAAGACCAAG
JMSF031D04+ TACAAAGGCTCCAATACTAGAAGCCCTTCCCAAAAGCTGAGGCTCCCCACCAAGACCAAG
JMSF012J13+ TACAAAGGCTCCAATACTAGAAGCCCTTCCCAAAAGCTGAGGCTCCCCACCAAGACCAAG
____________________________________________________________
consensus TACAAAGGCTCCAATACTAGAAGCCCTTCCCAAAAGCTGAGGCTCCCCACCAAGACCAAG
. : . : . : . : . : . :
JMFS065D06+ TGCTATTGCACAAACAAGTGAGCTCTTACCAGAGCCATTAGGTCCAATTACAAGGTTTAA
JMFS142A07+ TGCTATTGCACAAACAAGTGAGCTCTTACCAGAGCCATTAGGTCCAATTACAAGGTTTAA
JMSF032H09+ TGCTATTGCACAAACAAGTGAGCTCTTACCAGAGCCATTAGGTCCAATTACAAGGTTTAA
JMSF031D04+ TGCTATTGCACAAACAAGTGAGCTCTTACCAGAGCCATTAGGTCCAATTACAAGGTTTAA
JMSF012J13+ TGCTATTGCACAAACAAGTGAGCTCTTACCAGAGCCATTAGGTCCAATTACAAGGTTTAA
____________________________________________________________
consensus TGCTATTGCACAAACAAGTGAGCTCTTACCAGAGCCATTAGGTCCAATTACAAGGTTTAA
. : . : . : . : . : . :
JMFS065D06+ CCGTGAGCCTGGTTTGCACTTCAACTGACTAAAGGTCATGAAATTATGAAGCTCAATCTC
JMFS142A07+ CCGTGAGCCTGGTTTGCACTTCAACTGACTAAAGGTCATGAAATTATGAAGCTCAATCTC
JMSF032H09+ CCGTGAGCCTGGTTTGCACTTCAACTGACTAAAGGTCATGAAATTATGAAGCTCAATCTC
JMSF031D04+ CCGTGAGCCTGGTTTGCACTTCAACTGACTAAAGGTCATGAAATTATGAAGCTCAATCTC
JMSF012J13+ CCGTGAGCCTGGTTTGCACTTCAACTGACTAAAGGTCATGAAATTATGAAGCTCAATCTC
____________________________________________________________
consensus CCGTGAGCCTGGTTTGCACTTCAACTGACTAAAGGTCATGAAATTATGAAGCTCAATCTC
. : . : . : . : . : . :
JMFS065D06+ AGTTATGTTACCAGGCATATAATCATCTTCACCCCTCGTAATCTTGATTCTCTTAGCGCC
JMFS142A07+ AGTTATGTTACCAGGCATATAATCATCTTCACCCCTCGTAATCTTGATTCTCTTAGCGCC
JMSF032H09+ AGTTATGTTACCAGGCATATAATCATCTTCACCCCTCGTAATCTTGATTCTCTTAGCGCC
JMSF031D04+ AGTTATGTTACCAGGCATATAATCATCTTCACCCCTCGTAATCTTGATTCTCTTAGCGCC
JMSF012J13+ AGTTATGTTACCAGGCATATAATCATCTTCACCCCTCGTAATCTTGATTCTCTTAGCGCC
____________________________________________________________
consensus AGTTATGTTACCAGGCATATAATCATCTTCACCCCTCGTAATCTTGATTCTCTTAGCGCC
. : . : . : . : . : . :
JMFS065D06+ GGGCTCCGCCATGAGAGCTTACTAGGGTTTCCTGCGGGATAGACGATCACTGTAGCAAGT
JMFS142A07+ GGGCTCCGCCATGAGAGCTTACTAGGGTTTCCTGCGGGATAGACGATCACTGTAGCAAGT
JMSF032H09+ GGGCTCCGCCATGAGAGCTTACTAGGGTTTCCTGCGGGATAGACGATCACTGTAGCAAGT
JMSF031D04+ GGGCTCCGCCATGAGAGCTTACTAGGGTTTCCTGCGGGATAGACGATCACTGTAGCAAGT
JMSF012J13+ GGGCTCCGCCATGAGAGCTTACTAGGGTTTCCTGCGGGATAGACGATCACTGTAGCAAGT
____________________________________________________________
consensus GGGCTCCGCCATGAGAGCTTACTAGGGTTTCCTGCGGGATAGACGATCACTGTAGCAAGT
. : . : . : . : . : . :
JMFS065D06+ ATGCTCTGCTGCTGCTGCTGCTGCTGCCGAGT
JMFS142A07+ ATGCTCTGCTGCTGCTGCTGCTGCTGCCGAGTTATGTGAAG
JMSF032H09+ ATGCTCTGCTGCTGCTGCTGCTGCTGCCGAGTTATGTGAAGTGTGAGCAAACTTT
JMSF031D04+ ATGCTCTGCTGCTGCTGCTGCTGCTGCCGAGTTATGTGAAGTGTGAGCAAACTTT
JMSF012J13+ ATGCTCTGCTGCTGCTGCTGCTGCTGCCGAGTTATGTGAAGTGTGAGCAAACTTTTGGCC
____________________________________________________________
consensus ATGCTCTGCTGCTGCTGCTGCTGCTGCCGAGTTATGTGAAGTGTGAGCAAACTTTTGGCC