Contig 003592:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001D07Sequence530003592 (8)emb|CDP17953.1|2e-57unnamed protein product [Coffea canephora]
JMFF044C20Sequence637003592 (8)ref|XP_010665155.1|9e-127PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Vitis vin604009788 (5)emb|CDP17953.1|6e-53unnamed protein product [Coffea canephora]
JMFF045G19Sequence638003592 (8)ref|XP_010665155.1|2e-125PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Vitis vin557009788 (5)emb|CDP17953.1|5e-44unnamed protein product [Coffea canephora]
JMSF012B03Sequence244003592 (8)ref|XP_008345274.1|1e-17PREDICTED: polypyrimidine tract-binding protein homolog 3-like [Malus domestica
JMSF012O24Sequence285003592 (8)emb|CDP17953.1|3e-52unnamed protein product [Coffea canephora]
JMSF026F07Sequence678003592 (8)ref|XP_010665155.1|8e-149PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Vitis vin812009788 (5)ref|XP_009621583.1|2e-134PREDICTED: polypyrimidine tract-binding protein homolog 3-like isoform X2 [Nico
JMSF029M07Sequence657003592 (8)ref|XP_010665155.1|1e-118PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Vitis vin764009788 (5)ref|XP_011078771.1|8e-130PREDICTED: polypyrimidine tract-binding protein homolog 3 [Sesamum indicum] ref
JMSF034N18Sequence682003592 (8)ref|XP_009768478.1|1e-103PREDICTED: polypyrimidine tract-binding protein homolog 3-like [Nicotiana sylve138009788 (5)

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026F07+                                                                    GGA
                      ____________________________________________________________
consensus                                                                      GGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026F07+           ATACATCCCACCAGCATCTCCATATCCATGTTGAGACGATTTCCCCTTTTGTTCAGATGG
JMSF034N18+                                                              TTCAGATGG
                      ____________________________________________________________
consensus             ATACATCCCACCAGCATCTCCATATCCATGTTGAGACGATTTCCCCTTTTGTTCAGATGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026F07+           TAGATTTGGGTTGGTGAAATCCCTTGATCTGTCATTATTATAGTTCACTTGTAGTTCATC
JMFF044C20+                                  TTGATCTGTCATTATTATAGTTCACTTGTAGTTCATC
JMFF045G19+                                  TTGATCTGTCATTATAATAGTTCACTTGTAGTTCATC
JMSF034N18+           TAGATTTGGGTTGGTGAAATCCCTTGATCTGTCATTATTATAGTTCACTTGTAGTTCATC
JMSF029M07+                                                                  TCATC
                      ____________________________________________________________
consensus             TAGATTTGGGTTGGTGAAATCCCTTGATCTGTCATTATTATAGTTCACTTGTAGTTCATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026F07+           TAGGTTTGAAAACTGAATATCCAGTTGACAGCAACCATCATAAATATTACGCCCCTGAAG
JMFF044C20+           TAGGTTGANAAACTGAATATCCAGTTGACAGCAACCATCATAAATATTACGCCCCTGAAG
JMFF045G19+           TAGGTTTGAAAACTGAATATCCAGTTGACAGCAACCATCATAAATATTACGCCCCTGAAG
JMSF034N18+           TAGGTTTGAAAACTGAATATCCAGTTGACAGCAACCATCATAAATATTACGCCCCTGAAG
JMSF029M07+           TAGGTTTGAAAACTGAATATCCAGTTGACAGCAACCATCATAAATATTACGCCCCTGAAG
                      ____________________________________________________________
consensus             TAGGTTTGAAAACTGAATATCCAGTTGACAGCAACCATCATAAATATTACGCCCCTGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026F07+           AGCATTCCTTGCAGATACAGCACTTTGGTTTGTTTGAAATTGAATCAAAGCTTGAAAACC
JMFF044C20+           AGCATTCCTTGCAGATACAGCACTTTGGTTTGTTTGAAATTGAATCAAAGCTTGAAAACC
JMFF045G19+           AGCATTCCTTGCAGATACAGCACTTTGGTTTGTTAGAAATTGAATCAAAGCTTGAAAACC
JMSF034N18+           AGCATTCCTTGCAGATACAGCACTTTGGTTTGTTTGAAATTGAATCAAAGCTTGAAAACC
JMSF029M07+           AGCATTCCTTGCAGATACAGCACTTTGGTTTGTTTGAAATTGAATCAAAGCTTGAAAACC
                      ____________________________________________________________
consensus             AGCATTCCTTGCAGATACAGCACTTTGGTTTGTTTGAAATTGAATCAAAGCTTGAAAACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026F07+           AGCCGACTTCTGAAATGTGACGATCTTCTCTACAAATCCATGTGGAGAAAACACTTGATG
JMFF044C20+           AGCCGACTTCTGAAATGTGACGATCTTCTCTACAAATCCATGTGGAGAAAACACTTGATG
JMFF045G19+           AGCCGACTTCTGAAATGTGACGATCTTCTCTACAAATCCATGTGGAGAAAACACTTGATG
JMSF034N18+           AGCCGACTTCTGAAATGTGACGATCTTCTCTACAAATCCATGTGGAGAAAACACTTGATG
JMSF029M07+           AGCCGACTTCTGAAATGTGACGATCTTCTCTACAAATCCATGTGGAGAAAACACTTGATG
                      ____________________________________________________________
consensus             AGCCGACTTCTGAAATGTGACGATCTTCTCTACAAATCCATGTGGAGAAAACACTTGATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026F07+           CAGCACTTCCACAGTTATAGGGTATAGCATGTGATGTATTGTAACTAAGAGAATTCGATT
JMFF044C20+           CAGCACTTCCACAGTTATAGGGTATAGCATGTGATGTATTGTAACTAAGAGAATTCGATT
JMFF045G19+           CAGCACTTCCACAGTTATAGGGTATAGCATGTGATGTATTGTAACTAAGAGAATTCGATT
JMSF034N18+           CAGCACTTCCACAGTTATAGGGTATAGCATGTGATGTATTGTAACTAAGAGAATTCGATT
JMSF029M07+           CAGCACTTCCACAGTTATAGGGTATAGCATGTGATGTATTGTAACTAAGAGAATTCGATT
                      ____________________________________________________________
consensus             CAGCACTTCCACAGTTATAGGGTATAGCATGTGATGTATTGTAACTAAGAGAATTCGATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF012O24+                                         GTCCATAGTTGTTAGCTCTTGATGTGAAGA
JMSF026F07+           AGGCTCATCGCCTCGACTTTGTGTGTTCTGGTCCATAGTTGTTAGCTCTTGATGTGAAGA
JMFF044C20+           AGGCTCATCGCCTCGACTTTGTGTGTTCTGGTCCATAGTTGTTAGCTCTTGATGTGAAGA
JMFF045G19+           AGGCTCATCGCCTCGACTTTGTGTGTTCTGGTCCATAGTTGTTAGCTCTTGATGTGAAGA
JMSF034N18+           AGGCTCATCGCCTCGAC-TTGTGTGTTCTGGTCCATAGTTGTTAGCTCTTGATGTGAAGA
JMFF001D07+              CTCATCGCCTCGACTTTGTGTGTTCTGGTCCATAGTTGTTAGCTCTTGATGTGAAGA
JMSF029M07+           AGGCTCATCGCCTCGACTTTGTGTGTTCTGGTCCATAGTTGTTAGCTCTTGATGTGAAGA
                      ____________________________________________________________
consensus             AGGCTCATCGCCTCGACTTTGTGTGTTCTGGTCCATAGTTGTTAGCTCTTGATGTGAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF012O24+           GAACTGAATATAAACATTCCGCCCTCTTATGCTAGGTTGCACATTCGTGTAAAATTGCAA
JMSF026F07+           GAACTGAATATAAACATTCCGCCCTCTTATGCTAGGTTGCACATTCGTGTAAAATTGCAA
JMFF044C20+           GAACTGAATATAAACATTCCGCCCTCTTATGCTAGGTTGCACATTCGTGTAAAATTGCAA
JMFF045G19+           GAACTGAATATAAACATTCCGCCCTCTTATGCTAGGTTGCACATTCGTGTAAAATTGCAA
JMSF034N18+           GAACTGAATATAAACATTCCGCCCTCTTATGCTAGGTTGCACATTCGTGTAAAATTGCAA
JMFF001D07+           GAACTGAATATAAACATTCCGCCCTCTTATGCTAGGTTGCACATTCGTGTAAAATTGCAA
JMSF029M07+           GAACTGAATATAAACATTCCGCCCTCTTATGCTAGGTTGCACATTCGTGTAAAATTGCAA
                      ____________________________________________________________
consensus             GAACTGAATATAAACATTCCGCCCTCTTATGCTAGGTTGCACATTCGTGTAAAATTGCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF012O24+           TGCATTTACAGCTGAAGGAACATCTTGCATTTGAAGGAGGGCCTGATTTTTTGCTCTTAG
JMSF026F07+           TGCATTTACAGCTGAAGGAACATCTTGCATTTGAAGGAGGGCCTGATTTTTTGCTCTTAG
JMFF044C20+           TGCATTTACAGCTGAAGGAACATCTTGCATTTGAAGGAGGGCCTGATTTTTTGCTCTTAG
JMFF045G19+           TGCATTTACAGCTGAAGGAACATCTTGCATTTGAAGGAGGGCCTGATTTTTTGCTCTTAG
JMSF034N18+           TGCATTTACAGCTGAAGGAACATCTTGCATTTGAAGGAGGGCCTGATTTTTTGCTCTTAG
JMFF001D07+           TGCATTTACAGCTGAAGGAACATCTTGCATTTGAAGGAGGGCCTGATTTTTTGCTCTTAG
JMSF029M07+           TGCATTTACAGCTGAAGGAACATCTTGCATTTGAAGGAGGGCCTGATTTTTTGCTCTTAG
JMSF012B03+                                                                   TTAG
                      ____________________________________________________________
consensus             TGCATTTACAGCTGAAGGAACATCTTGCATTTGAAGGAGGGCCTGATTTTTTGCTCTTAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF012O24+           CATCACAAGTTTTGTTATAACCCCAAATGGCTGGAACAGCTGAAGCAAATCATTCTCGGA
JMSF026F07+           CATCACAAGTTTTGTTATAACCCCAAATGGCTGGAACAGCTGAAGCAAATCATTCTCGGA
JMFF044C20+           CATCACAAGTTTTGTTATAACCCCAAATGGCTGGAACAGCTGAAGCAAATCATTCTCGGA
JMFF045G19+           CATCACAAGTTTTGTTATAACCCCAAATGGCTGGAACAGCTGAAGCAAATCATTCTCGGA
JMSF034N18+           CATCACAAGTTTTGTTATAACCCCAAATGGCTGGAACAGCTGAAGCAAATCATTCTCGGA
JMFF001D07+           CATCACAAGTTTTGTTATAACCCCAAATGGCTGGAACAGCTGAAGCAAATCATTCTCGGA
JMSF029M07+           CATCACAAGTTTTGTTATAACCCCAAATGGCTGGAACAGCTGAAACAAATCATTCTCGGA
JMSF012B03+           CATCACAAGTTTTGTTATAACCCCAAATGGCTGGAACAGCTGAAGCAAATCATTCTCGGA
                      ____________________________________________________________
consensus             CATCACAAGTTTTGTTATAACCCCAAATGGCTGGAACAGCTGAAGCAAATCATTCTCGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF012O24+           AATCTCATGGCCCACATTACGAACATGAATGACCTTTGAAGGCTCCGTCATTTTCAATGG
JMSF026F07+           AATCTCATGGCCCACATTACGAACATGAATGACCTTTGAAGGCTCCGTCATTTTCAATGG
JMFF044C20+           AATCTCATGGCCCACATTACGAACATGAATGACCTTTGAAGGCTCCGTCATTTTCAATGG
JMFF045G19+           AATCTCATGGCCCACATTACGAACATGAATGACCTTTGAAGGCTCCGTCATTTTCAATGG
JMSF034N18+           AATCTCATGGCCCACATTACGAACATGAATGACCTTTGAAGGCTCCGTCATTTTCAATGG
JMFF001D07+           AATCTCATGGCCCACATTACGAACATGAATGACCTTTGAAGGCTCCGTCATTTTCAATGG
JMSF029M07+           AATCTCATGGCCCACATTACGAACATGAATGACCTTTGAAGGCTCCGTCATTTTCAATGG
JMSF012B03+           AATCTCATGGCCCACATTACGAACATGAATGACCTTTGAAGGCTCCGTCATTTTCAATGG
                      ____________________________________________________________
consensus             AATCTCATGGCCCACATTACGAACATGAATGACCTTTGAAGGCTCCGTCATTTTCAATGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF012O24+           CCTTCAGATATATCA                                             
JMSF026F07+           CCTTCAGATATATCA                                             
JMFF044C20+           CCTTCAGATATATCACTCGAGGAGAGAGAGTGGGAAAGATAGAGAGAAGAAGAAGAAGAA
JMFF045G19+           CCTTCAGATATATCACTCGAGGAGAGAGAGTGGGAAAGATAGAGAGAAGAAGAAGAAGAA
JMSF034N18+           CCTTCAGATATATCACTCGAGGAGAGAGAGTGGGAAAGATAGAGAGAAGAAGAAGAAGAA
JMFF001D07+           CCTTCAGATATATCACTCGAGGAGAGAGAGTGGGAAAGATAGAGAGAAGAAGAAGAAGAA
JMSF029M07+           CCTTCAGATATATCACTCGAGGAGAGAGAGTGGGAAAGATAGAGAGAAGAAGAAGAAGAA
JMSF012B03+           CCTTCAGATATATCACTCGAGGAGAGAGAGTGGGAAAGATAGAGAGAAGAAGAAGAAGAA
                      ____________________________________________________________
consensus             CCTTCAGATATATCACTCGAGGAGAGAGAGTGGGAAAGATAGAGAGAAGAAGAAGAAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF034N18+           GAGATGGAGGACT                                               
JMFF001D07+           GAGATGGAGGACT                                               
JMSF029M07+           GAGATGGAGGACTAGGGTTTGGGTTGGTAGCACGTGAGGGTTAAAGGGCTT         
JMSF012B03+           GAGATGGAGGACTAGGGTTTGGGTTGGTAGCACGTGAGGGTTAAAGGGCTTATCTTGTTC
                      ____________________________________________________________
consensus             GAGATGGAGGACTAGGGTTTGGGTTGGTAGCACGTGAGGGTTAAAGGGCTTATCTTGTTC