Contig 003592:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001D07Sequence530003592 (8)emb|CDP17953.1|2e-57unnamed protein product [Coffea canephora]
JMFF044C20Sequence637003592 (8)ref|XP_010665155.1|9e-127PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Vitis vin604009788 (5)emb|CDP17953.1|6e-53unnamed protein product [Coffea canephora]
JMFF045G19Sequence638003592 (8)ref|XP_010665155.1|2e-125PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Vitis vin557009788 (5)emb|CDP17953.1|5e-44unnamed protein product [Coffea canephora]
JMSF012B03Sequence244003592 (8)ref|XP_008345274.1|1e-17PREDICTED: polypyrimidine tract-binding protein homolog 3-like [Malus domestica
JMSF012O24Sequence285003592 (8)emb|CDP17953.1|3e-52unnamed protein product [Coffea canephora]
JMSF026F07Sequence678003592 (8)ref|XP_010665155.1|8e-149PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Vitis vin812009788 (5)ref|XP_009621583.1|2e-134PREDICTED: polypyrimidine tract-binding protein homolog 3-like isoform X2 [Nico
JMSF029M07Sequence657003592 (8)ref|XP_010665155.1|1e-118PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Vitis vin764009788 (5)ref|XP_011078771.1|8e-130PREDICTED: polypyrimidine tract-binding protein homolog 3 [Sesamum indicum] ref
JMSF034N18Sequence682003592 (8)ref|XP_009768478.1|1e-103PREDICTED: polypyrimidine tract-binding protein homolog 3-like [Nicotiana sylve138009788 (5)

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF026F07+ GGA
                      ____________________________________________________________
consensus GGA
 
. : . : . : . : . : . :
JMSF026F07+ ATACATCCCACCAGCATCTCCATATCCATGTTGAGACGATTTCCCCTTTTGTTCAGATGG
JMSF034N18+ TTCAGATGG
                      ____________________________________________________________
consensus ATACATCCCACCAGCATCTCCATATCCATGTTGAGACGATTTCCCCTTTTGTTCAGATGG
 
. : . : . : . : . : . :
JMSF026F07+ TAGATTTGGGTTGGTGAAATCCCTTGATCTGTCATTATTATAGTTCACTTGTAGTTCATC
JMFF044C20+ TTGATCTGTCATTATTATAGTTCACTTGTAGTTCATC
JMFF045G19+ TTGATCTGTCATTATAATAGTTCACTTGTAGTTCATC
JMSF034N18+ TAGATTTGGGTTGGTGAAATCCCTTGATCTGTCATTATTATAGTTCACTTGTAGTTCATC
JMSF029M07+ TCATC
                      ____________________________________________________________
consensus TAGATTTGGGTTGGTGAAATCCCTTGATCTGTCATTATTATAGTTCACTTGTAGTTCATC
 
. : . : . : . : . : . :
JMSF026F07+ TAGGTTTGAAAACTGAATATCCAGTTGACAGCAACCATCATAAATATTACGCCCCTGAAG
JMFF044C20+ TAGGTTGANAAACTGAATATCCAGTTGACAGCAACCATCATAAATATTACGCCCCTGAAG
JMFF045G19+ TAGGTTTGAAAACTGAATATCCAGTTGACAGCAACCATCATAAATATTACGCCCCTGAAG
JMSF034N18+ TAGGTTTGAAAACTGAATATCCAGTTGACAGCAACCATCATAAATATTACGCCCCTGAAG
JMSF029M07+ TAGGTTTGAAAACTGAATATCCAGTTGACAGCAACCATCATAAATATTACGCCCCTGAAG
                      ____________________________________________________________
consensus TAGGTTTGAAAACTGAATATCCAGTTGACAGCAACCATCATAAATATTACGCCCCTGAAG
 
. : . : . : . : . : . :
JMSF026F07+ AGCATTCCTTGCAGATACAGCACTTTGGTTTGTTTGAAATTGAATCAAAGCTTGAAAACC
JMFF044C20+ AGCATTCCTTGCAGATACAGCACTTTGGTTTGTTTGAAATTGAATCAAAGCTTGAAAACC
JMFF045G19+ AGCATTCCTTGCAGATACAGCACTTTGGTTTGTTAGAAATTGAATCAAAGCTTGAAAACC
JMSF034N18+ AGCATTCCTTGCAGATACAGCACTTTGGTTTGTTTGAAATTGAATCAAAGCTTGAAAACC
JMSF029M07+ AGCATTCCTTGCAGATACAGCACTTTGGTTTGTTTGAAATTGAATCAAAGCTTGAAAACC
                      ____________________________________________________________
consensus AGCATTCCTTGCAGATACAGCACTTTGGTTTGTTTGAAATTGAATCAAAGCTTGAAAACC
 
. : . : . : . : . : . :
JMSF026F07+ AGCCGACTTCTGAAATGTGACGATCTTCTCTACAAATCCATGTGGAGAAAACACTTGATG
JMFF044C20+ AGCCGACTTCTGAAATGTGACGATCTTCTCTACAAATCCATGTGGAGAAAACACTTGATG
JMFF045G19+ AGCCGACTTCTGAAATGTGACGATCTTCTCTACAAATCCATGTGGAGAAAACACTTGATG
JMSF034N18+ AGCCGACTTCTGAAATGTGACGATCTTCTCTACAAATCCATGTGGAGAAAACACTTGATG
JMSF029M07+ AGCCGACTTCTGAAATGTGACGATCTTCTCTACAAATCCATGTGGAGAAAACACTTGATG
                      ____________________________________________________________
consensus AGCCGACTTCTGAAATGTGACGATCTTCTCTACAAATCCATGTGGAGAAAACACTTGATG
 
. : . : . : . : . : . :
JMSF026F07+ CAGCACTTCCACAGTTATAGGGTATAGCATGTGATGTATTGTAACTAAGAGAATTCGATT
JMFF044C20+ CAGCACTTCCACAGTTATAGGGTATAGCATGTGATGTATTGTAACTAAGAGAATTCGATT
JMFF045G19+ CAGCACTTCCACAGTTATAGGGTATAGCATGTGATGTATTGTAACTAAGAGAATTCGATT
JMSF034N18+ CAGCACTTCCACAGTTATAGGGTATAGCATGTGATGTATTGTAACTAAGAGAATTCGATT
JMSF029M07+ CAGCACTTCCACAGTTATAGGGTATAGCATGTGATGTATTGTAACTAAGAGAATTCGATT
                      ____________________________________________________________
consensus CAGCACTTCCACAGTTATAGGGTATAGCATGTGATGTATTGTAACTAAGAGAATTCGATT
 
. : . : . : . : . : . :
JMSF012O24+ GTCCATAGTTGTTAGCTCTTGATGTGAAGA
JMSF026F07+ AGGCTCATCGCCTCGACTTTGTGTGTTCTGGTCCATAGTTGTTAGCTCTTGATGTGAAGA
JMFF044C20+ AGGCTCATCGCCTCGACTTTGTGTGTTCTGGTCCATAGTTGTTAGCTCTTGATGTGAAGA
JMFF045G19+ AGGCTCATCGCCTCGACTTTGTGTGTTCTGGTCCATAGTTGTTAGCTCTTGATGTGAAGA
JMSF034N18+ AGGCTCATCGCCTCGAC-TTGTGTGTTCTGGTCCATAGTTGTTAGCTCTTGATGTGAAGA
JMFF001D07+ CTCATCGCCTCGACTTTGTGTGTTCTGGTCCATAGTTGTTAGCTCTTGATGTGAAGA
JMSF029M07+ AGGCTCATCGCCTCGACTTTGTGTGTTCTGGTCCATAGTTGTTAGCTCTTGATGTGAAGA
                      ____________________________________________________________
consensus AGGCTCATCGCCTCGACTTTGTGTGTTCTGGTCCATAGTTGTTAGCTCTTGATGTGAAGA
 
. : . : . : . : . : . :
JMSF012O24+ GAACTGAATATAAACATTCCGCCCTCTTATGCTAGGTTGCACATTCGTGTAAAATTGCAA
JMSF026F07+ GAACTGAATATAAACATTCCGCCCTCTTATGCTAGGTTGCACATTCGTGTAAAATTGCAA
JMFF044C20+ GAACTGAATATAAACATTCCGCCCTCTTATGCTAGGTTGCACATTCGTGTAAAATTGCAA
JMFF045G19+ GAACTGAATATAAACATTCCGCCCTCTTATGCTAGGTTGCACATTCGTGTAAAATTGCAA
JMSF034N18+ GAACTGAATATAAACATTCCGCCCTCTTATGCTAGGTTGCACATTCGTGTAAAATTGCAA
JMFF001D07+ GAACTGAATATAAACATTCCGCCCTCTTATGCTAGGTTGCACATTCGTGTAAAATTGCAA
JMSF029M07+ GAACTGAATATAAACATTCCGCCCTCTTATGCTAGGTTGCACATTCGTGTAAAATTGCAA
                      ____________________________________________________________
consensus GAACTGAATATAAACATTCCGCCCTCTTATGCTAGGTTGCACATTCGTGTAAAATTGCAA
 
. : . : . : . : . : . :
JMSF012O24+ TGCATTTACAGCTGAAGGAACATCTTGCATTTGAAGGAGGGCCTGATTTTTTGCTCTTAG
JMSF026F07+ TGCATTTACAGCTGAAGGAACATCTTGCATTTGAAGGAGGGCCTGATTTTTTGCTCTTAG
JMFF044C20+ TGCATTTACAGCTGAAGGAACATCTTGCATTTGAAGGAGGGCCTGATTTTTTGCTCTTAG
JMFF045G19+ TGCATTTACAGCTGAAGGAACATCTTGCATTTGAAGGAGGGCCTGATTTTTTGCTCTTAG
JMSF034N18+ TGCATTTACAGCTGAAGGAACATCTTGCATTTGAAGGAGGGCCTGATTTTTTGCTCTTAG
JMFF001D07+ TGCATTTACAGCTGAAGGAACATCTTGCATTTGAAGGAGGGCCTGATTTTTTGCTCTTAG
JMSF029M07+ TGCATTTACAGCTGAAGGAACATCTTGCATTTGAAGGAGGGCCTGATTTTTTGCTCTTAG
JMSF012B03+ TTAG
                      ____________________________________________________________
consensus TGCATTTACAGCTGAAGGAACATCTTGCATTTGAAGGAGGGCCTGATTTTTTGCTCTTAG
 
. : . : . : . : . : . :
JMSF012O24+ CATCACAAGTTTTGTTATAACCCCAAATGGCTGGAACAGCTGAAGCAAATCATTCTCGGA
JMSF026F07+ CATCACAAGTTTTGTTATAACCCCAAATGGCTGGAACAGCTGAAGCAAATCATTCTCGGA
JMFF044C20+ CATCACAAGTTTTGTTATAACCCCAAATGGCTGGAACAGCTGAAGCAAATCATTCTCGGA
JMFF045G19+ CATCACAAGTTTTGTTATAACCCCAAATGGCTGGAACAGCTGAAGCAAATCATTCTCGGA
JMSF034N18+ CATCACAAGTTTTGTTATAACCCCAAATGGCTGGAACAGCTGAAGCAAATCATTCTCGGA
JMFF001D07+ CATCACAAGTTTTGTTATAACCCCAAATGGCTGGAACAGCTGAAGCAAATCATTCTCGGA
JMSF029M07+ CATCACAAGTTTTGTTATAACCCCAAATGGCTGGAACAGCTGAAACAAATCATTCTCGGA
JMSF012B03+ CATCACAAGTTTTGTTATAACCCCAAATGGCTGGAACAGCTGAAGCAAATCATTCTCGGA
                      ____________________________________________________________
consensus CATCACAAGTTTTGTTATAACCCCAAATGGCTGGAACAGCTGAAGCAAATCATTCTCGGA
 
. : . : . : . : . : . :
JMSF012O24+ AATCTCATGGCCCACATTACGAACATGAATGACCTTTGAAGGCTCCGTCATTTTCAATGG
JMSF026F07+ AATCTCATGGCCCACATTACGAACATGAATGACCTTTGAAGGCTCCGTCATTTTCAATGG
JMFF044C20+ AATCTCATGGCCCACATTACGAACATGAATGACCTTTGAAGGCTCCGTCATTTTCAATGG
JMFF045G19+ AATCTCATGGCCCACATTACGAACATGAATGACCTTTGAAGGCTCCGTCATTTTCAATGG
JMSF034N18+ AATCTCATGGCCCACATTACGAACATGAATGACCTTTGAAGGCTCCGTCATTTTCAATGG
JMFF001D07+ AATCTCATGGCCCACATTACGAACATGAATGACCTTTGAAGGCTCCGTCATTTTCAATGG
JMSF029M07+ AATCTCATGGCCCACATTACGAACATGAATGACCTTTGAAGGCTCCGTCATTTTCAATGG
JMSF012B03+ AATCTCATGGCCCACATTACGAACATGAATGACCTTTGAAGGCTCCGTCATTTTCAATGG
                      ____________________________________________________________
consensus AATCTCATGGCCCACATTACGAACATGAATGACCTTTGAAGGCTCCGTCATTTTCAATGG
 
. : . : . : . : . : . :
JMSF012O24+ CCTTCAGATATATCA
JMSF026F07+ CCTTCAGATATATCA
JMFF044C20+ CCTTCAGATATATCACTCGAGGAGAGAGAGTGGGAAAGATAGAGAGAAGAAGAAGAAGAA
JMFF045G19+ CCTTCAGATATATCACTCGAGGAGAGAGAGTGGGAAAGATAGAGAGAAGAAGAAGAAGAA
JMSF034N18+ CCTTCAGATATATCACTCGAGGAGAGAGAGTGGGAAAGATAGAGAGAAGAAGAAGAAGAA
JMFF001D07+ CCTTCAGATATATCACTCGAGGAGAGAGAGTGGGAAAGATAGAGAGAAGAAGAAGAAGAA
JMSF029M07+ CCTTCAGATATATCACTCGAGGAGAGAGAGTGGGAAAGATAGAGAGAAGAAGAAGAAGAA
JMSF012B03+ CCTTCAGATATATCACTCGAGGAGAGAGAGTGGGAAAGATAGAGAGAAGAAGAAGAAGAA
                      ____________________________________________________________
consensus CCTTCAGATATATCACTCGAGGAGAGAGAGTGGGAAAGATAGAGAGAAGAAGAAGAAGAA
 
. : . : . : . : . : . :
JMSF034N18+ GAGATGGAGGACT
JMFF001D07+ GAGATGGAGGACT
JMSF029M07+ GAGATGGAGGACTAGGGTTTGGGTTGGTAGCACGTGAGGGTTAAAGGGCTT
JMSF012B03+ GAGATGGAGGACTAGGGTTTGGGTTGGTAGCACGTGAGGGTTAAAGGGCTTATCTTGTTC
                      ____________________________________________________________
consensus GAGATGGAGGACTAGGGTTTGGGTTGGTAGCACGTGAGGGTTAAAGGGCTTATCTTGTTC