| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF021M01 | Sequence | 467 | 003590 (4) | ref|XP_006351366.1| | 6e-82 | PREDICTED: asparagine--tRNA ligase, cytoplasmic 1-like [Solanum tuberosum] | 658 | 004212 (3) | ref|XP_006351366.1| | 9e-92 | PREDICTED: asparagine--tRNA ligase, cytoplasmic 1-like [Solanum tuberosum] |
| JMFS049E09 | Sequence | 604 | 003590 (4) | ref|XP_006351366.1| | 1e-113 | PREDICTED: asparagine--tRNA ligase, cytoplasmic 1-like [Solanum tuberosum] | |||||
| JMSF011N13 | Sequence | 345 | 003590 (4) | ref|XP_006351366.1| | 1e-43 | PREDICTED: asparagine--tRNA ligase, cytoplasmic 1-like [Solanum tuberosum] | 727 | 004212 (3) | ref|XP_006351366.1| | 6e-101 | PREDICTED: asparagine--tRNA ligase, cytoplasmic 1-like [Solanum tuberosum] |
| JMSF034F03 | Sequence | 652 | 003590 (4) | ref|XP_006351366.1| | 2e-97 | PREDICTED: asparagine--tRNA ligase, cytoplasmic 1-like [Solanum tuberosum] | 690 | 004212 (3) | ref|XP_006351366.1| | 4e-101 | PREDICTED: asparagine--tRNA ligase, cytoplasmic 1-like [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
JMSF034F03+ GCCTCACTAATTAAAGTTGTGACTTGAAACATCTCTCCAGCACCCTC
____________________________________________________________
consensus GCCTCACTAATTAAAGTTGTGACTTGAAACATCTCTCCAGCACCCTC
. : . : . : . : . : . :
JMSF034F03+ ACAATCACTGGTGGTAACGATTGGAGTATGGACATATAAAAACCCATGCTTTTGGAAGAA
JMFS049E09+ GTAACGATTGGAGTATGGACATATAAAAACCCATGCTTTTGGAAGAA
____________________________________________________________
consensus ACAATCACTGGTGGTAACGATTGGAGTATGGACATATAAAAACCCATGCTTTTGGAAGAA
. : . : . : . : . : . :
JMSF034F03+ TGTGTGAGTGGCATATGCCAGGGCATTGCGGATTCTTGCAAGTGAAGAAATAGTGTTGGT
JMFS049E09+ TGTGTGAGTGGCATATGCCAGGGCATTGCGGATTCTTGCAAGTGAAGAAATAGTGTTGGT
____________________________________________________________
consensus TGTGTGAGTGGCATATGCCAGGGCATTGCGGATTCTTGCAAGTGAAGAAATAGTGTTGGT
. : . : . : . : . : . :
JMSF034F03+ TAGCGAGCGAAGATGAACAACA-CCCGAAGAAACTCAAGTGTGAGTTTGGTCTTCGGCAA
JMFF021M01+ CCGAAGAAACTCAAGTGTGAGTTTGGTCTTCGGCAA
JMFS049E09+ TCGCGAGCGAAGATGAACAACATCCCGAAGAAACTCAAGTGTGAGTTTGGTCTTCGGCAA
____________________________________________________________
consensus TCGCGAGCGAAGATGAACAACATCCCGAAGAAACTCAAGTGTGAGTTTGGTCTTCGGCAA
. : . : . : . : . : . :
JMSF034F03+ AGGATATTTAGCAGCATCGACAGTACCAACCGCGATGACCTTCTGAACCCGAAGCTCGAC
JMFF021M01+ AGGATATTTAGCAGCATCGACAGTACCAACCGCGATGACCTTCTGAACCCGAAGCTCGAC
JMFS049E09+ AGGATATTTAGCAGCATCGACAGTACCAACCGCGATGACCTTCTGAACCCGAAGCTCGAC
____________________________________________________________
consensus AGGATATTTAGCAGCATCGACAGTACCAACCGCGATGACCTTCTGAACCCGAAGCTCGAC
. : . : . : . : . : . :
JMSF034F03+ CTTCTGCTTCGTGCCTTCAGGGGGCAACTTCAGCAGTCCCTCCACGTGAACGCATGTCCC
JMFF021M01+ CTTCTGCTTCGTGCCTTCAGGGGGCAACTTCAGCAGTCCCTCCACGTGAACGCATGTCCC
JMFS049E09+ CTTCTGCTTCGTGCCTTCAGGGGGCAACTTCAGCAGTCCCTCCACGTGAACGCATGTCCC
____________________________________________________________
consensus CTTCTGCTTCGTGCCTTCAGGGGGCAACTTCAGCAGTCCCTCCACGTGAACGCATGTCCC
. : . : . : . : . : . :
JMSF034F03+ CGTAGCAACCAAATCACCGAGCTTGTGAACGGCAGCGTCGACGATGACCTGTAGATTCGC
JMFF021M01+ CGTAGCAACCAAATCACCGAGCTTGTGAACGGCAGCGTCGACGATGACCTGTAGATTCGC
JMFS049E09+ CGTAGCAACCAAATCACCGAGCTTGTGAACGGCAGCGTCGACGATGACCTGTAGATTCGC
JMSF011N13+ ACCGAGCTTGTGAACGGCAGCGTCGACGATGACCTGTAGATTCGC
____________________________________________________________
consensus CGTAGCAACCAAATCACCGAGCTTGTGAACGGCAGCGTCGACGATGACCTGTAGATTCGC
. : . : . : . : . : . :
JMSF034F03+ CGGGCACGACCCGTCATTCACTTCCAGGAATGCAAACGCCCCCTTCCCTTGCTCCCTGCC
JMFF021M01+ CGGGCACGACCCGTCATTCACTTCCAGGAATGCAAACGCCCCCTTCCCTTGCTCCCTGCC
JMFS049E09+ CGGGCACGACCCGTCATTCACTTCCAGGAATGCAAACGCCCCCTTCCCTTGCTCCCTGCC
JMSF011N13+ CGGGCACGACCCGTCATTCACTTCCAGGAATGCAAACGCCCCCTTCCCTTGCTCCCTGCC
____________________________________________________________
consensus CGGGCACGACCCGTCATTCACTTCCAGGAATGCAAACGCCCCCTTCCCTTGCTCCCTGCC
. : . : . : . : . : . :
JMSF034F03+ GGTTTTAACCCATCCACCAATTTTGACGACTTGGCCGGCGAGTCCAGCTCCGGCGTCTGG
JMFF021M01+ GGTTTTAACCCATCCACCAATTTTGACGACTTGGCCGGCGAGTCCAGCTCCGGCGTCTGG
JMFS049E09+ GGTTTTAACCCATCCACCAATTTTGACGACTTGGCCGGCGAGTCCAGCTCCGGCGTCTGG
JMSF011N13+ GGTTTTAACCCATCCACCAATTTTGACGACTTGGCCGGCGAGTCCAGCTCCGGCGTCTGG
____________________________________________________________
consensus GGTTTTAACCCATCCACCAATTTTGACGACTTGGCCGGCGAGTCCAGCTCCGGCGTCTGG
. : . : . : . : . : . :
JMSF034F03+ ACGGCCAAGAATAGACTTTATCAGGACTCGTTGTGAGAACTCTGCTTTAGCGACGGAGTC
JMFF021M01+ ACGGCCAAGAATAGACTTTATCAGGACTCGTTGTGAGAACTCTGCTTTAGCGACGGAGTC
JMFS049E09+ ACGGCCAAGAATAGACTTTATCAGGACTCGTTGTGAGAACTCTGCTTTAGCGACGGAGTC
JMSF011N13+ ACGGCCAAGAATAGACTTTATCAGGACTCGTTGTGAGAACTCTGCTTTAGCGACGGAGTC
____________________________________________________________
consensus ACGGCCAAGAATAGACTTTATCAGGACTCGTTGTGAGAACTCTGCTTTAGCGACGGAGTC
. : . : . : . : . : . :
JMSF034F03+ GCTCAGGGAGAGCTTGTCCACCGGCGGCGTGGAATCAACTGACATTTTCGCGTTGATTTC
JMFF021M01+ GCTCAGGGAGAGCTTGTCCACCGGCGGCGTGGAATCAACTGACATTTTCGCGTTGATTTC
JMFS049E09+ GCTCAGGGAGAGCTTGTCCACCGGCGGCGTGGAATCAACTGACATTTTCGCGTTGATTTC
JMSF011N13+ GCTCAGGAAGAGCTTGTCCACCGGCGGCGTGGAATCAACTGACATTTTCGCGTTGATTTC
____________________________________________________________
consensus GCTCAGGGAGAGCTTGTCCACCGGCGGCGTGGAATCAACTGACATTTTCGCGTTGATTTC
. : . : . : . : . : . :
JMSF034F03+ CCGTC
JMFF021M01+ CCGTC
JMFS049E09+ CCGTCAAGCAC
JMSF011N13+ CCGTCAAGCACTCAAAGCTGTAGAGTGTAGAGGGTTTTTTACGAATAGGGTTTTTGCATC
____________________________________________________________
consensus CCGTCAAGCACTCAAAGCTGTAGAGTGTAGAGGGTTTTTTACGAATAGGGTTTTTGCATC