| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF035J01 | Sequence | 560 | 003582 (5) | emb|CDP19325.1| | 5e-66 | unnamed protein product [Coffea canephora] | 698 | 001150 (4) | ref|XP_006345040.1| | 1e-65 | PREDICTED: RNA-dependent RNA polymerase 2-like [Solanum tuberosum] |
| JMFS074D08 | Sequence | 626 | 003582 (5) | emb|CDP19325.1| | 1e-79 | unnamed protein product [Coffea canephora] | |||||
| JMFS078G05 | Sequence | 617 | 003582 (5) | emb|CDP19325.1| | 7e-78 | unnamed protein product [Coffea canephora] | |||||
| JMSF010N11 | Sequence | 170 | 003582 (5) | 769 | 001150 (4) | ref|XP_009623301.1| | 1e-90 | PREDICTED: RNA-dependent RNA polymerase 2 [Nicotiana tomentosiformis] | |||
| JMSF013H05 | Sequence | 537 | 003582 (5) | emb|CDP19325.1| | 2e-63 | unnamed protein product [Coffea canephora] | 774 | 001150 (4) | ref|XP_009796585.1| | 4e-84 | PREDICTED: RNA-dependent RNA polymerase 2 [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
JMFS078G05+ TCTTCTTTGCAGATATGGTACCTGTCACTGGAGAACTTTGATGCAACATCTTT
JMFS074D08+ AAAATCTTCTTTGCAGATATGGTACCTGTCACTGGAGAACTTTGATGCAACATCTTT
____________________________________________________________
consensus AAAATCTTCTTTGCAGATATGGTACCTGTCACTGGAGAACTTTGATGCAACATCTTT
. : . : . : . : . : . :
JMFS078G05+ TCCAGAAACTTTCCGGTATATCTTTGGGGCAAATTTAAGCTTGAACAGGACTGCATCGTG
JMFS074D08+ TCCAGAAACTTTCCGGTATATCTTTGGGGCAAATTTAAGCTTGAACAGGACTGCATCGTG
JMFF035J01+ GGGGCAAATTTAAGCTTGAACAGGACTGCATCGTG
____________________________________________________________
consensus TCCAGAAACTTTCCGGTATATCTTTGGGGCAAATTTAAGCTTGAACAGGACTGCATCGTG
. : . : . : . : . : . :
JMFS078G05+ GTCCTCAGTATGATCAAGAGAGCACCTAGACGTCTCCACAACATCCCCAAACTGAACTTC
JMFS074D08+ GTCCTCAGTATGATCAAGAGAGCACCTAGACGTCTCCACAACATCCCCAAACTGAACTTC
JMFF035J01+ GTCCTCAGTATGATCAAGAGAGCACCTAGACGTCTCCACAACATCCCCAAACTGAACTTC
JMSF013H05+ CCTCAGTATGATCAAGAGAGCACCTAGACGTCTCCACAACATCCCCAAACTGAACTTC
____________________________________________________________
consensus GTCCTCAGTATGATCAAGAGAGCACCTAGACGTCTCCACAACATCCCCAAACTGAACTTC
. : . : . : . : . : . :
JMFS078G05+ GAGCTTGTAACACTCCCCATCTTGGCTACTAATCCAGAACTCAATAATCCCCCTTTCCGG
JMFS074D08+ GAGCTTGTAACACTCCCCATCTTGGCTACTAATCCAGAACTCAATAATCCCCCTTTCCGG
JMFF035J01+ GAGCTTGTAACACTCCCCATCTTGGCTACTAATCCAGAACTCAATAATCCCCCTTTCCGG
JMSF013H05+ GAGCTTGTAACACTCCCCATCTTGGCTACTAATCCAGAACTCAATAATCCCCCTTTCCGG
____________________________________________________________
consensus GAGCTTGTAACACTCCCCATCTTGGCTACTAATCCAGAACTCAATAATCCCCCTTTCCGG
. : . : . : . : . : . :
JMFS078G05+ CATGATCCAAGTCCTGACATTGTTCCAGGACTCCATAGGGCGCATGACGTCACTATCGAC
JMFS074D08+ CATGATCCAAGTCCTGACATTGTTCCAGGACTCCATAGGGCGCATGACGTCACTATCGAC
JMFF035J01+ CATGATCCAAGTCCTGACATTGTTCCAGGACTCCATAGGGCGCATGACGTCACTATCGAC
JMSF013H05+ CATGATCCAAGTCCTGACATTGTTCCAGGACTCCATAGGGCGCATGACGTCACTATCGAC
____________________________________________________________
consensus CATGATCCAAGTCCTGACATTGTTCCAGGACTCCATAGGGCGCATGACGTCACTATCGAC
. : . : . : . : . : . :
JMFS078G05+ CATGATCCCAGCATACAAGGTCCCACTCCCGAAGCGATGATCAGGCCTGACTGGGCGGAA
JMFS074D08+ CATGATCCCAGCATACAAGGTCCCACTCCCGAAGCGATGATCAGGCCTGACTGGGCGGAA
JMFF035J01+ CATGATCCCAGCATACAAGGTCCCACTCCCGAAGCGATGATCAGGCCTGACTGGGCGGAA
JMSF013H05+ CATGATCCCAGCATACAAGGTCCCACTCCCGAAGCGATGATCAGGCCTGACTGGGCGGAA
____________________________________________________________
consensus CATGATCCCAGCATACAAGGTCCCACTCCCGAAGCGATGATCAGGCCTGACTGGGCGGAA
. : . : . : . : . : . :
JMFS078G05+ GATGATTTCGTCATGGGAGTGGGAGATGGAGAGGTGGGAGCCTTTGAAAGAGAGGCGGCG
JMFS074D08+ GATGATTTCGTCATGGGAGTGGGAGATGGAGAGGTGGGAGCCTTTGAAAGAGAGGCGGCG
JMFF035J01+ GATGATTTCGTCATGGGAGTGGGAGATGGAGAGGTGGGAGCCTTTGAAAGAGAGGCGGCG
JMSF013H05+ GATGATTTCGTCATGGGAGTGGGAGATGGAGAGGTGGGAGCCTTTGAAAGAGAGGCGGCG
____________________________________________________________
consensus GATGATTTCGTCATGGGAGTGGGAGATGGAGAGGTGGGAGCCTTTGAAAGAGAGGCGGCG
. : . : . : . : . : . :
JMFS078G05+ TTGGTCGGAGAGGCACAGAGCGAGCTGCTTGGCTTGAAGGGACTCGAACTGGACTCTGCC
JMFS074D08+ TTGGTCGGAGAGGCACAGAGCGAGCTGCTTGGCTTGAAGGGACTCGAACTGGACTCTGCC
JMFF035J01+ TTGGTCGGAGAGGCACAGAGCGAGCTGCTTGGCTTGAAGGGACTCGAACTGGACTCTGCC
JMSF013H05+ TTGGTCGGAGAGGCACAGAGCGAGCTGCTTGGCTTGAAGGGACTCGAACTGGACTCTGCC
____________________________________________________________
consensus TTGGTCGGAGAGGCACAGAGCGAGCTGCTTGGCTTGAAGGGACTCGAACTGGACTCTGCC
. : . : . : . : . : . :
JMFS078G05+ GTGGCCTCTGGATTTCCAGTTCTTGTGCTCCGTGAAGATCTCGACGGCGAAGATGGAATC
JMFS074D08+ GTGGCCTCTGGATTTCCAGTTCTTGTGCTCCGTGAAGATCTCGACGGCGAAGATGGAATC
JMFF035J01+ GTGGCCTCTGGATTTCCAGTTCTTGTGCTCCGTGAAGATCTCGACGGCGAAGATGGAATC
JMSF013H05+ GTGGCCTCTGGATTTCCAGTTCTTGTGCTCCGTGAAGATCTCGACGGCGAAGATGGAATC
____________________________________________________________
consensus GTGGCCTCTGGATTTCCAGTTCTTGTGCTCCGTGAAGATCTCGACGGCGAAGATGGAATC
. : . : . : . : . : . :
JMFS078G05+ CTGGCCGACGGCGTACTCGAGGAAGGCGAGGAGCTCATTGGCTATGGCGCTTTGGGGAAT
JMFS074D08+ CTGGCCGACGGCGTACTCGAGGAAGGCGAGGAGCTCATTGGCTATGGCGCTTTGGGGAAT
JMFF035J01+ CTGGCCGACGGCGTACTCGAGGAAGGCGAGGAGCTCATTGGCTATGGCGCTTTGGGGAAT
JMSF013H05+ CTGGCCGACGGCGTACTCGAGGAAGGCGAGGAGCTCATTGGCTATGGCGCTTTGGGGAAT
JMSF010N11+ GCGTACTCGAGGAAGGCGAGGANCTCATTGGCTATGGCGCTTTGGGGAAT
____________________________________________________________
consensus CTGGCCGACGGCGTACTCGAGGAAGGCGAGGAGCTCATTGGCTATGGCGCTTTGGGGAAT
. : . : . : . : . : . :
JMFS078G05+ GTGAGTCACCCTCACACTTGCTGT
JMFS074D08+ GTGAGTCACCCTCACACTTGCTGT
JMFF035J01+ GTGAGTCACCCTCACACTTGCTGTGATTCTCTCCTCCATGCCCAT
JMSF013H05+ GTGAGTCACCCTCACACTTGCTGTGATTCTCTCCTCCATGCCCATAAATTGAGATAGTC
JMSF010N11+ GTGAGTCACCNTCACACNNGCTGTGATTCTCTCCTCCATGCCCATAAATTGAGATAGTGG
____________________________________________________________
consensus GTGAGTCACCCTCACACTTGCTGTGATTCTCTCCTCCATGCCCATAAATTGAGATAGTGG
. : . : . : . : . : . :
JMSF010N11+ GACTGGGGACCTGGGAGGGTTTTACTTTTATGCCTTAGCTTTTGCCTTTNGAGGTTTTCC
____________________________________________________________
consensus GACTGGGGACCTGGGAGGGTTTTACTTTTATGCCTTAGCTTTTGCCTTTNGAGGTTTTCC