Contig 003578:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003F24Sequence547003578 (2)ref|XP_009768353.1|1e-42PREDICTED: probable protein phosphatase 2C 76 isoform X1 [Nicotiana sylvestris]708003935 (2)ref|XP_009768358.1|4e-61PREDICTED: probable protein phosphatase 2C 76 isoform X3 [Nicotiana sylvestris]
JMSF010K06Sequence408003578 (2)ref|XP_009768353.1|7e-09PREDICTED: probable protein phosphatase 2C 76 isoform X1 [Nicotiana sylvestris]743003935 (2)ref|XP_009768358.1|5e-62PREDICTED: probable protein phosphatase 2C 76 isoform X3 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFF003F24+                                                               GGCCATCA
                      ____________________________________________________________
consensus                                                                 GGCCATCA
 
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JMFF003F24+           AATATCCCAAACAAACAAATTGTCTTTCCATCAATCTTGGAAGTCTTAATATCATAAAAA
                      ____________________________________________________________
consensus             AATATCCCAAACAAACAAATTGTCTTTCCATCAATCTTGGAAGTCTTAATATCATAAAAA
 
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JMFF003F24+           TCCTCCATGCTTGCTCTCTTTCCTCGGAAGCTAGAATAACCACAACTCAACCTTGCATCT
                      ____________________________________________________________
consensus             TCCTCCATGCTTGCTCTCTTTCCTCGGAAGCTAGAATAACCACAACTCAACCTTGCATCT
 
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JMFF003F24+           TCACTCTTCCATCCTCCACTGGCATAGCCACCGTCATCATCCTTCTCAGGTTTAACATCT
JMSF010K06+                                      CCACCGTCATCATCCTTCTCAGGTTTAACATCT
                      ____________________________________________________________
consensus             TCACTCTTCCATCCTCCACTGGCATAGCCACCGTCATCATCCTTCTCAGGTTTAACATCT
 
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JMFF003F24+           TGTTTAGCCATTGAACTAGTATCTGCCATCATCTTTCTTCTTGTTGTAACTCTACAATCC
JMSF010K06+           TGTTTAGCCATTGAACTAGTATCTGCCATCATCTTTCTTCTTGTTGTAACTCTACAATCC
                      ____________________________________________________________
consensus             TGTTTAGCCATTGAACTAGTATCTGCCATCATCTTTCTTCTTGTTGTAACTCTACAATCC
 
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JMFF003F24+           CAAATATTATAGCTTATGTTTCTAGTTGCAATCAAAATTGGAACAAAGTTATTAAACTGC
JMSF010K06+           CAAATATTATAGCTTATGTTTCTAGTTGCAATCAAAATTGGAACAAAGTTATTAAACTGC
                      ____________________________________________________________
consensus             CAAATATTATAGCTTATGTTTCTAGTTGCAATCAAAATTGGAACAAAGTTATTAAACTGC
 
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JMFF003F24+           CTTCCCACTGCATATCTCACAATCCGTGGAGCTTGAAAAATCCCAAATTGTCCAGCTTCA
JMSF010K06+           CTTCCCACTGCATATCTCACAATCCGTGGAGCTTGAAAAATCCCAAATTGTCCAGCTTCA
                      ____________________________________________________________
consensus             CTTCCCACTGCATATCTCACAATCCGTGGAGCTTGAAAAATCCCAAATTGTCCAGCTTCA
 
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JMFF003F24+           ACAACCACAGATCCCAAGCAACTAGTGCATACCATCTAAATCAATTACATCAGCTATAAG
JMSF010K06+           ACAACCACAGATCCCAAGCAACTAGTGCATACCATCTAAATCAATTACATCAGCTATAAG
                      ____________________________________________________________
consensus             ACAACCACAGATCCCAAGCAACTAGTGCATACCATCTAAATCAATTACATCAGCTATAAG
 
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JMFF003F24+           TGAATGCCATGACTCAGACTTCAGATACACGAGAGAGACCGCGAGCTGTTGAAGCTTTGG
JMSF010K06+           TGAATGCCATGACTCAGACTTCAGATACACGAGAGAGACCGCGAGCTGTTGAAGCTTTGG
                      ____________________________________________________________
consensus             TGAATGCCATGACTCAGACTTCAGATACACGAGAGAGACCGCGAGCTGTTGAAGCTTTGG
 
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JMFF003F24+           AAGTGAGTAGTGACCGAAGAGAAAGATGCAACGTGGCAGTCCTCATGCATCTGCTG    
JMSF010K06+           AAGTGAGTAGTGACCGAAGAGAAAGATGCAACGTGGCAGTCCTCATGCATCTGCTGCCTC
                      ____________________________________________________________
consensus             AAGTGAGTAGTGACCGAAGAGAAAGATGCAACGTGGCAGTCCTCATGCATCTGCTGCCTC