Contig 003575:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF010G24Sequence250003575 (3)738021389ref|XP_009612191.1|3e-50PREDICTED: APO protein 4, mitochondrial [Nicotiana tomentosiformis]
JMSF015F03Sequence236003575 (3)771008482 (2)ref|XP_009612191.1|7e-37PREDICTED: APO protein 4, mitochondrial [Nicotiana tomentosiformis]
JMSF036F01Sequence677003575 (3)ref|XP_009612191.1|3e-64PREDICTED: APO protein 4, mitochondrial [Nicotiana tomentosiformis]723008482 (2)ref|XP_009612191.1|1e-57PREDICTED: APO protein 4, mitochondrial [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF036F01+ ATGACATTTTG
                      ____________________________________________________________
consensus ATGACATTTTG
 
. : . : . : . : . : . :
JMSF036F01+ AAACATATTGTGCAGATGAAACGTTTCTACAGGAATTAGAATACTATCCAAGCTTCCTTT
                      ____________________________________________________________
consensus AAACATATTGTGCAGATGAAACGTTTCTACAGGAATTAGAATACTATCCAAGCTTCCTTT
 
. : . : . : . : . : . :
JMSF036F01+ GATCCATACATGAAGTTGATTCTTTGTACGGTGCCTATAACCACCACAGGTCCGAATTAA
                      ____________________________________________________________
consensus GATCCATACATGAAGTTGATTCTTTGTACGGTGCCTATAACCACCACAGGTCCGAATTAA
 
. : . : . : . : . : . :
JMSF036F01+ ATGACCATTTTCTCCAACATACACTTCTGGACAGTATTTGCATATCCACACAGGTAAATG
                      ____________________________________________________________
consensus ATGACCATTTTCTCCAACATACACTTCTGGACAGTATTTGCATATCCACACAGGTAAATG
 
. : . : . : . : . : . :
JMSF036F01+ TTGGAGTAGGGTGGATACTCCATGATAGAGCGCAGCTTTGGCCTTGAGGACCTCCCGAGC
                      ____________________________________________________________
consensus TTGGAGTAGGGTGGATACTCCATGATAGAGCGCAGCTTTGGCCTTGAGGACCTCCCGAGC
 
. : . : . : . : . : . :
JMSF036F01+ CACAGGGACCATGTCCTTCACTGGATAATCCTTGGCTCGGTTCTCAATCCTCTTCAGAAT
                      ____________________________________________________________
consensus CACAGGGACCATGTCCTTCACTGGATAATCCTTGGCTCGGTTCTCAATCCTCTTCAGAAT
 
. : . : . : . : . : . :
JMSF036F01+ CATCGGTCTCAGCTTCTTCAAGTCCACCACCTTAGGTTTTGTTCTGTAGAATCGACAACC
                      ____________________________________________________________
consensus CATCGGTCTCAGCTTCTTCAAGTCCACCACCTTAGGTTTTGTTCTGTAGAATCGACAACC
 
. : . : . : . : . : . :
JMSF036F01+ ATCCATCATAGTTCCCAACACAATCTCACCTTGTCTCCATAGCTCTTGGCTTCTCCAAGC
                      ____________________________________________________________
consensus ATCCATCATAGTTCCCAACACAATCTCACCTTGTCTCCATAGCTCTTGGCTTCTCCAAGC
 
. : . : . : . : . : . :
JMSF036F01+ CATTCCAACGAGTGTGAATAACTAGGATGTAGACAACAGCTTTTGTTTAGATCGTCGATT
JMSF015F03+ ATGTAGACAACAGCTTTTGTTTAGATCGCCGATT
                      ____________________________________________________________
consensus CATTCCAACGAGTGTGAATAACTAGGATGTAGACAACAGCTTTTGTTTAGATCGTCGATT
 
. : . : . : . : . : . :
JMSF036F01+ TGGTGTACAAAAACACCAATTTCATCTACCGGGCTACACCACTGCGATTCACCCTAGCAC
JMSF015F03+ TGGTGTACAAAAACACCAATTTCATCTACCGGGCTACACCACTGCGATTCACCCTAGCAC
JMSF010G24+ ACCCTAGCAC
                      ____________________________________________________________
consensus TGGTGTACAAAAACACCAATTTCATCTACCGGGCTACACCACTGCGATTCACCCTAGCAC
 
. : . : . : . : . : . :
JMSF036F01+ ACTGCTATTCGTACAGTACGCTAGAGACCAGAAGAACGGGATTTTGTCAAAGAACAAAGG
JMSF015F03+ ACTGCTATTCGTACAGTACGCTAGAGACCAGAAGAACGGGATTTTGTCAAAGAACAAAGG
JMSF010G24+ ACTGCTATTCGTACAGTACGCTAGAGACCAGAAGAACGGGATTTTGTCAAAGAACAAAGG
                      ____________________________________________________________
consensus ACTGCTATTCGTACAGTACGCTAGAGACCAGAAGAACGGGATTTTGTCAAAGAACAAAGG
 
. : . : . : . : . : . :
JMSF036F01+ CTAGGGTTTCAGCGATTTGCAACCTTAGGTTGTTTGCCGATTGGGTGTAAAAAAAACCCA
JMSF015F03+ CTAGGGTTTCAGCGATTTGCAACCTTAGGTTGTTTGCCGATTGGGTGTAAAAAAAACCCA
JMSF010G24+ CTAGGGTTTCAGCGATTTGCAACCTTAGGTTGTTTGCCGATTGGGTGTAAAAAAAACCCA
                      ____________________________________________________________
consensus CTAGGGTTTCAGCGATTTGCAACCTTAGGTTGTTTGCCGATTGGGTGTAAAAAAAACCCA
 
. : . : . : . : . : . :
JMSF036F01+ GATT
JMSF015F03+ GATTGCAGGTAGGAGTCC
JMSF010G24+ GATTGCAGGTAGGAGTCCATCAGAATCGAAATTAAAGCACTAAGACATAAGGCTACAACA
                      ____________________________________________________________
consensus GATTGCAGGTAGGAGTCCATCAGAATCGAAATTAAAGCACTAAGACATAAGGCTACAACA
 
. : . : . : . : . : . :
JMSF010G24+ ATAACATTCCGACAAATCTAGAGAGAGAGAGTGACAACGACAGAGAGAAGACGAAAGCCC
                      ____________________________________________________________
consensus ATAACATTCCGACAAATCTAGAGAGAGAGAGTGACAACGACAGAGAGAAGACGAAAGCCC