Contig 003575:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF010G24Sequence250003575 (3)738021389ref|XP_009612191.1|3e-50PREDICTED: APO protein 4, mitochondrial [Nicotiana tomentosiformis]
JMSF015F03Sequence236003575 (3)771008482 (2)ref|XP_009612191.1|7e-37PREDICTED: APO protein 4, mitochondrial [Nicotiana tomentosiformis]
JMSF036F01Sequence677003575 (3)ref|XP_009612191.1|3e-64PREDICTED: APO protein 4, mitochondrial [Nicotiana tomentosiformis]723008482 (2)ref|XP_009612191.1|1e-57PREDICTED: APO protein 4, mitochondrial [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMSF036F01+                                                            ATGACATTTTG
                      ____________________________________________________________
consensus                                                              ATGACATTTTG
 
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JMSF036F01+           AAACATATTGTGCAGATGAAACGTTTCTACAGGAATTAGAATACTATCCAAGCTTCCTTT
                      ____________________________________________________________
consensus             AAACATATTGTGCAGATGAAACGTTTCTACAGGAATTAGAATACTATCCAAGCTTCCTTT
 
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JMSF036F01+           GATCCATACATGAAGTTGATTCTTTGTACGGTGCCTATAACCACCACAGGTCCGAATTAA
                      ____________________________________________________________
consensus             GATCCATACATGAAGTTGATTCTTTGTACGGTGCCTATAACCACCACAGGTCCGAATTAA
 
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JMSF036F01+           ATGACCATTTTCTCCAACATACACTTCTGGACAGTATTTGCATATCCACACAGGTAAATG
                      ____________________________________________________________
consensus             ATGACCATTTTCTCCAACATACACTTCTGGACAGTATTTGCATATCCACACAGGTAAATG
 
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JMSF036F01+           TTGGAGTAGGGTGGATACTCCATGATAGAGCGCAGCTTTGGCCTTGAGGACCTCCCGAGC
                      ____________________________________________________________
consensus             TTGGAGTAGGGTGGATACTCCATGATAGAGCGCAGCTTTGGCCTTGAGGACCTCCCGAGC
 
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JMSF036F01+           CACAGGGACCATGTCCTTCACTGGATAATCCTTGGCTCGGTTCTCAATCCTCTTCAGAAT
                      ____________________________________________________________
consensus             CACAGGGACCATGTCCTTCACTGGATAATCCTTGGCTCGGTTCTCAATCCTCTTCAGAAT
 
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JMSF036F01+           CATCGGTCTCAGCTTCTTCAAGTCCACCACCTTAGGTTTTGTTCTGTAGAATCGACAACC
                      ____________________________________________________________
consensus             CATCGGTCTCAGCTTCTTCAAGTCCACCACCTTAGGTTTTGTTCTGTAGAATCGACAACC
 
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JMSF036F01+           ATCCATCATAGTTCCCAACACAATCTCACCTTGTCTCCATAGCTCTTGGCTTCTCCAAGC
                      ____________________________________________________________
consensus             ATCCATCATAGTTCCCAACACAATCTCACCTTGTCTCCATAGCTCTTGGCTTCTCCAAGC
 
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JMSF036F01+           CATTCCAACGAGTGTGAATAACTAGGATGTAGACAACAGCTTTTGTTTAGATCGTCGATT
JMSF015F03+                                     ATGTAGACAACAGCTTTTGTTTAGATCGCCGATT
                      ____________________________________________________________
consensus             CATTCCAACGAGTGTGAATAACTAGGATGTAGACAACAGCTTTTGTTTAGATCGTCGATT
 
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JMSF036F01+           TGGTGTACAAAAACACCAATTTCATCTACCGGGCTACACCACTGCGATTCACCCTAGCAC
JMSF015F03+           TGGTGTACAAAAACACCAATTTCATCTACCGGGCTACACCACTGCGATTCACCCTAGCAC
JMSF010G24+                                                             ACCCTAGCAC
                      ____________________________________________________________
consensus             TGGTGTACAAAAACACCAATTTCATCTACCGGGCTACACCACTGCGATTCACCCTAGCAC
 
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JMSF036F01+           ACTGCTATTCGTACAGTACGCTAGAGACCAGAAGAACGGGATTTTGTCAAAGAACAAAGG
JMSF015F03+           ACTGCTATTCGTACAGTACGCTAGAGACCAGAAGAACGGGATTTTGTCAAAGAACAAAGG
JMSF010G24+           ACTGCTATTCGTACAGTACGCTAGAGACCAGAAGAACGGGATTTTGTCAAAGAACAAAGG
                      ____________________________________________________________
consensus             ACTGCTATTCGTACAGTACGCTAGAGACCAGAAGAACGGGATTTTGTCAAAGAACAAAGG
 
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JMSF036F01+           CTAGGGTTTCAGCGATTTGCAACCTTAGGTTGTTTGCCGATTGGGTGTAAAAAAAACCCA
JMSF015F03+           CTAGGGTTTCAGCGATTTGCAACCTTAGGTTGTTTGCCGATTGGGTGTAAAAAAAACCCA
JMSF010G24+           CTAGGGTTTCAGCGATTTGCAACCTTAGGTTGTTTGCCGATTGGGTGTAAAAAAAACCCA
                      ____________________________________________________________
consensus             CTAGGGTTTCAGCGATTTGCAACCTTAGGTTGTTTGCCGATTGGGTGTAAAAAAAACCCA
 
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JMSF036F01+           GATT                                                        
JMSF015F03+           GATTGCAGGTAGGAGTCC                                          
JMSF010G24+           GATTGCAGGTAGGAGTCCATCAGAATCGAAATTAAAGCACTAAGACATAAGGCTACAACA
                      ____________________________________________________________
consensus             GATTGCAGGTAGGAGTCCATCAGAATCGAAATTAAAGCACTAAGACATAAGGCTACAACA
 
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JMSF010G24+           ATAACATTCCGACAAATCTAGAGAGAGAGAGTGACAACGACAGAGAGAAGACGAAAGCCC
                      ____________________________________________________________
consensus             ATAACATTCCGACAAATCTAGAGAGAGAGAGTGACAACGACAGAGAGAAGACGAAAGCCC