| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF003L14 | Sequence | 499 | 003571 (4) | gb|AID55340.1| | 2e-27 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Actinidia arguta] | 751 | 005864 (3) | gb|KJB37089.1| | 2e-117 | hypothetical protein B456_006G189200 [Gossypium raimondii] |
| JMFF020E02 | Sequence | 567 | 003571 (4) | ref|XP_004298943.1| | 1e-59 | PREDICTED: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic [Frag | |||||
| JMFS043D09 | Sequence | 601 | 003571 (4) | ref|NP_001234553.1| | 204 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase [Solanum lycopersicum] gb|AAK960 | |||||
| JMSF009K13 | Sequence | 404 | 003571 (4) | ref|XP_011016464.1| | 1e-07 | PREDICTED: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic-like | 714 | 005864 (3) | gb|KJB37089.1| | 9e-121 | hypothetical protein B456_006G189200 [Gossypium raimondii] |
This contig is upended
. : . : . : . : . : . :
JMFF020E02+ ATTTCAGGTTTGTCTTCC
JMFS043D09+ AGGTTTGTCTTCC
____________________________________________________________
consensus ATTTCAGGTTTGTCTTCC
. : . : . : . : . : . :
JMFF020E02+ AGACCAGACAAAGCTTCTTTGAGTTCTTCAACCAATGATTCATGTTGAACAGAAACTAAC
JMFS043D09+ AGACCAGACAAAGCTTCTTTGAGTTCTTCAACCAATGATTCATGTTGAACAGAAACTAAC
____________________________________________________________
consensus AGACCAGACAAAGCTTCTTTGAGTTCTTCAACCAATGATTCATGTTGAACAGAAACTAAC
. : . : . : . : . : . :
JMFF020E02+ TTTGGTCTGAATGTTTTGACCTGGTCAGCAAGAAGAGCCACATTTGACCCAGCTGCAAGT
JMFS043D09+ TTTGGTCTGAATGTTTTGACCTGGTCAGCAAGAAGAGCCACATTTGACCCAGCTGCAAGT
____________________________________________________________
consensus TTTGGTCTGAATGTTTTGACCTGGTCAGCAAGAAGAGCCACATTTGACCCAGCTGCAAGT
. : . : . : . : . : . :
JMFF020E02+ GCAACAACTCTAAATTTGTCTGGATTCTCCGCAACTATATCCAGCGTCTGAGTTCCAATA
JMFS043D09+ GCAACAACTCTAAATTTGTCTGGATTCTCCGCAACTATATCCAGCGTCTGAGTTCCAATA
JMFF003L14+ TCCGCAACTATATCCAGCGTCTGAGTTCCAATA
____________________________________________________________
consensus GCAACAACTCTAAATTTGTCTGGATTCTCCGCAACTATATCCAGCGTCTGAGTTCCAATA
. : . : . : . : . : . :
JMFF020E02+ GAACCAGTCGACCCGAGAATTGAAATAGGCTTTGGACCATCCCAACTCTTTTGGCTTGGT
JMFS043D09+ GAACCAGTCGACCCGAGAATTGAAATAGGCTTTGGACCATCCCAACTCTTTTGGCTTGGT
JMFF003L14+ GAACCAGTCGACCCGAGAATTGAAATAGGCTTTGGACCATCCCAACTCTTTTGGCTTGGT
____________________________________________________________
consensus GAACCAGTCGACCCGAGAATTGAAATAGGCTTTGGACCATCCCAACTCTTTTGGCTTGGT
. : . : . : . : . : . :
JMFF020E02+ TCAACCACAGCCCTTCCTGGCCAGGCAGGAGGAGGTGGCTGTGCAGCACACTGAATTGAT
JMFS043D09+ TCAACCACAGCCCTTCCTGGCCAGGCAGGAGGAGGTGGCTGTGCAGCACACTGAATTGAT
JMFF003L14+ TCAACCACAGCCCTTCCTGGCCAGGCAGGAGGAGGTGGCTGTGCAGCACACTGAATAGAT
JMSF009K13+ CTGGCCAGGCAGGAGGAGGTGGCTGTGCAGCACACTGAATTGAT
____________________________________________________________
consensus TCAACCACAGCCCTTCCTGGCCAGGCAGGAGGAGGTGGCTGTGCAGCACACTGAATTGAT
. : . : . : . : . : . :
JMFF020E02+ CTCTTTGCAAATTTTCAACCACAATCCTTTCTCTTGATTGCAAACCCACCTTTGGGCTTG
JMFS043D09+ CTCTTTGCAAATTTTCCACCACAATCCTTTCTCTTGATTGCAAACCCACCTTTGGGCTTG
JMFF003L14+ CTCTTTGCAAATTTTCCACCACAATCCTTTCTCTTGATTGCAAACCCACCTTTGGGCTTG
JMSF009K13+ CTCTTTGCAAATTTTCCACCACAATCCTTTCTCTTGATTGCAAACCCACCTTTGGGCTTG
____________________________________________________________
consensus CTCTTTGCAAATTTTCCACCACAATCCTTTCTCTTGATTGCAAACCCACCTTTGGGCTTG
. : . : . : . : . : . :
JMFF020E02+ AGAGATTTAGTCTTGGAGGAGTCCAAGAAAGAGATGGCCTTGATTTCAGGAGGCAACAGC
JMFS043D09+ AGAGATTTAGTCTTGGAGGAGTCCAAGAAAGAGATGGCCTTGATTTCAGGAGGCAACAGC
JMFF003L14+ AGAGATTTAGTCTTGGAGGAGTCCAAGAAAGAGATGGCCTTGATTTCAGGAGGCAACAGC
JMSF009K13+ AGAGATTTAGTCTTGGAGGAGTCCAAGAAAGAGATGGCCTTGATTTCAGGAGGCAACAGC
____________________________________________________________
consensus AGAGATTTAGTCTTGGAGGAGTCCAAGAAAGAGATGGCCTTGATTTCAGGAGGCAACAGC
. : . : . : . : . : . :
JMFF020E02+ AAATGCAGAGCCATTTCTTTCACTCAAATCAAACTCCAATAACCAAAAGAACCTCTCAAA
JMFS043D09+ AAATGCAGAGCCATTTCTTTCACTCAAATCAAACTCCAATAACCAAAAGAACCTCTCAAA
JMFF003L14+ AAATGCAGAGCCATTTCTTTCACTCAAATCAAACTCCAATAACCAAAAGAACCTCTCAAA
JMSF009K13+ AAATGCAGAGCCATTTCTTTCACTCAAATCAAACTCCAATAACCAAAAGAACCTCTCAAA
____________________________________________________________
consensus AAATGCAGAGCCATTTCTTTCACTCAAATCAAACTCCAATAACCAAAAGAACCTCTCAAA
. : . : . : . : . : . :
JMFF020E02+ CTCAGCTTTTTTTTTCTTTTCAAATCTTTTACCTGATCTGCTTACGAAACTCAGCTTTAC
JMFS043D09+ CTCAGCTTTTTTTTTCTTTTCAAATCTTTTACCTGATCTGCTTACGAAACTCAGCTTTAC
JMFF003L14+ CTCAGCTTTTTTTTTCTTTTCAAATCTTTTACCTGATCTGCTTACGAAACTCAGCTTTAC
JMSF009K13+ CTCAGCTTTTTTTTTCTTTTCAAATCTTTTACCTGATCTGCTTACGAAACTCAGCTTTAC
____________________________________________________________
consensus CTCAGCTTTTTTTTTCTTTTCAAATCTTTTACCTGATCTGCTTACGAAACTCAGCTTTAC
. : . : . : . : . : . :
JMFF020E02+ AATAACGAC
JMFS043D09+ AATAACGACAAGCCAAGAGTAAAGGAGCTAGAACTAGAAGAAATGC
JMFF003L14+ AATAACGACAAGCCAAGAGTAAAGGAGCTAGAACTAGAAGAAATGCATATTTAGTATGAG
JMSF009K13+ AATAACGACAAGCCAAGAGTAAAGGAGCTAGAACTAGAAGAAATGCATATTTAGTATGAG
____________________________________________________________
consensus AATAACGACAAGCCAAGAGTAAAGGAGCTAGAACTAGAAGAAATGCATATTTAGTATGAG
. : . : . : . : . : . :
JMFF003L14+ TTTGTGAGAAACGTGAGTGTGTGATTATCGTTTTTGAGAGTGAGAG
JMSF009K13+ TTTGTGAGAAACGTGAGTGTGTGATTATCGTTTTTGAGAGTGAGAGGAAAGGTGGAACCC
____________________________________________________________
consensus TTTGTGAGAAACGTGAGTGTGTGATTATCGTTTTTGAGAGTGAGAGGAAAGGTGGAACCC