Contig 003567:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF009E11Sequence390003567 (5)
JMSF027G18Sequence645003567 (5)277017165
JMSF033P19Sequence712003567 (5)753006184 (5)ref|XP_006439752.1|3e-57hypothetical protein CICLE_v10022413mg [Citrus clementina] ref|XP_006476731.1| P
JMSF044M19Sequence786003567 (5)581006184 (5)ref|XP_009590601.1|8e-50PREDICTED: pollen-specific protein SF3-like [Nicotiana tomentosiformis]
JMSF052A20Sequence631003567 (5)539017288

Alignment

This contig is upended


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JMSF044M19+                                                TTAAAATTAAAATTATAAATAAA
                      ____________________________________________________________
consensus                                                  TTAAAATTAAAATTATAAATAAA
 
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JMSF044M19+           TAGTAAGATGAGAAGTCATTTTTTTTACTGAAACAGAAATTACTCTGAAAAACCATGATT
                      ____________________________________________________________
consensus             TAGTAAGATGAGAAGTCATTTTTTTTACTGAAACAGAAATTACTCTGAAAAACCATGATT
 
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JMSF027G18+                                                  TTTTGAAAAAGAAAATTAAAA
JMSF044M19+           GCCTACTGTTTTGAAATCACTGCCAAAATCTGAGGGCAATTTTGAAAAAGAAAATTAAAA
JMSF033P19+                    TTTGAAATCACTGCCAAAATCTGAGGGCAATTTTGAAAAAGAAAATTAAAA
                      ____________________________________________________________
consensus             GCCTACTGTTTTGAAATCACTGCCAAAATCTGAGGGCAATTTTGAAAAAGAAAATTAAAA
 
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JMSF027G18+           GTTGAAGCTAACAGGTCAGATATTTCATATGAAGAGTTAAAATTTTAAACAAAACAGTAT
JMSF044M19+           GTTGAAGCTAACAGGTCAGATATTTCATATGAAGAGTTAAAATTTTAAACAAAACAGTAT
JMSF052A20+                        GGTCAGATATTTCATATGAAGAGTTAAAATTTTAAACAAAACAGTAT
JMSF033P19+           GTTGAAGCTAACAGGTCAGATATTTCATATGAAGAGTTAAAATTTTAAACAAAACAGTAT
                      ____________________________________________________________
consensus             GTTGAAGCTAACAGGTCAGATATTTCATATGAAGAGTTAAAATTTTAAACAAAACAGTAT
 
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JMSF027G18+           TTAAATCATTAATACATGATCAGCTATAAAACAGAAGGCAATAATACTATAGTTGCAAAC
JMSF044M19+           TTAAATCATTCATACATGATCAACTATAAAACAGAAGGCAATAATACTATAGTTGCAAAC
JMSF052A20+           TTAAATCATTCATACATGATCAACTATAAAACAGAAGGCAATAATACTATAGTTGCAAAC
JMSF033P19+           TTAAATCATTCATACATGATCAACTATAAAACAGAAGGCAATAATACTATAGTTGCAAAC
                      ____________________________________________________________
consensus             TTAAATCATTCATACATGATCAACTATAAAACAGAAGGCAATAATACTATAGTTGCAAAC
 
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JMSF027G18+           AATAGGTGAGATATTTCATATGAAGAGTTCAAAATTTAGCTGACATCGTTAACTACTAAA
JMSF044M19+           AATAGGTGAGATATTTCATATGAACAGTTCAAAATTTAGCTGACATCGTTAATTACTAAA
JMSF052A20+           AATAGGTGAGATATTTCATATGAACAGTTCAAAATTTAGCTGACATCGTTAATTACTAAA
JMSF033P19+           AATAGGTGAGATATTTCATATGAACAGTTCAAAATTTAGCTGACATCGTTAATTACTAAA
                      ____________________________________________________________
consensus             AATAGGTGAGATATTTCATATGAACAGTTCAAAATTTAGCTGACATCGTTAATTACTAAA
 
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JMSF027G18+           AAAATGTCCAA-TTTTTTTTCGGAAATTTCGTTTACAATTTTTTGAAAAACCCTAATTCA
JMSF044M19+           AAAATGTTCAATTTTTTTTTCGGAAATTTCGTCTACAATTTTTTGAAAAACCCTAATTCA
JMSF052A20+           AAAATGTTCAATTTTTTTTTCGGAAATTTCGTCTACAATTTTTTGAAAAACCCTAATTCA
JMSF033P19+           AAAATGTTCAATTTTTTTTTCGGAAATTTCGTCTACAATTTTTTGAAAAACCCTAATTCA
                      ____________________________________________________________
consensus             AAAATGTTCAATTTTTTTTTCGGAAATTTCGTCTACAATTTTTTGAAAAACCCTAATTCA
 
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JMSF027G18+           AATACACGAATAAACTGACAATAATTTCTAAATCCAACAAATACAAAAACATTTAGAGAA
JMSF044M19+           AATACCCGAATAAACCGACAATAATTTCTAAATCCAACAAATACAAAAACATTTAGAGAA
JMSF052A20+           AATACCCGAATAAACCGACAATAATTTCTAAATCCAACAAATACAAAAACATTTAGAGAA
JMSF033P19+           AATACCCGAATAAACCGACAATAATTTCTAAATCCAACAAATACAAAAACATTTAGAGAA
JMSF009E11+                         CCGACAATAATTTCTAAATCCAACAAATACAAAANCATTTAGAGAA
                      ____________________________________________________________
consensus             AATACCCGAATAAACCGACAATAATTTCTAAATCCAACAAATACAAAAACATTTAGAGAA
 
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JMSF027G18+           ATCTATAGTAAATAAAGAGTAAACCGAGTGAATCAACTAAAGGGATAGGTTCACTTATCT
JMSF044M19+           ATCTATAGTAAATAAAGAGTAAACCGAGTGAATCAACTAAAGGGATAGGTTCACTTATCT
JMSF052A20+           ATCTATAGTAAATAAAGAGTAAACCGAGTGAATCAACTAAAGGGATAGGTTCACTTATCT
JMSF033P19+           ATCTATAGTAAATAAAGAGTAAACCGAGTGAATCAACTAAAGGGATAGGTTCACTTATCT
JMSF009E11+           ATCTATAGTAAATAAAGAGTAAACCGAGTGAATCAACTAAAGGGATAGGTTCACTTATCT
                      ____________________________________________________________
consensus             ATCTATAGTAAATAAAGAGTAAACCGAGTGAATCAACTAAAGGGATAGGTTCACTTATCT
 
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JMSF027G18+           CAGTTAGGGTTTTCGACTGCTTCCTCAAATCGATGGTGCGATTTATGTCAATAGGGAATT
JMSF044M19+           ----------------CTGCTTCCTCAAATCGATGGTGCGATTTACGTCAATAGGGAATT
JMSF052A20+           ----------------CTGCTTCCTCAAATCGATGGTGCGATTTACGTCAATAGGGAATT
JMSF033P19+           ----------------CTGCTTCCTCAAATCGATGGTGCGATTTACGTCAATAGGGAATT
JMSF009E11+           ----------------CTGCTTCCTCAAATCGATGGTGCGATTTACGTCAATAGGGAATT
                      ____________________________________________________________
consensus             ----------------CTGCTTCCTCAAATCGATGGTGCGATTTACGTCAATAGGGAATT
 
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JMSF027G18+           TTATGAACTGAAGACGATGATCACTACTACAAAATTCCAGATCCGAGCCCTTAATCCACA
JMSF044M19+           TTATGAACTGAAGACGACGATCACTACTACAAAATTCCAGATCCGAGCCCTTAATCCACA
JMSF052A20+           TTATGAACTGAAGACGACGATCACTACTACAAAATTCCAGATCCGAGCCCTTAATCCACA
JMSF033P19+           TTATGAACTGAAGACGACGATCACTACTACAAAATTCCAGATCCGAGCCCTTAATCCACA
JMSF009E11+           TTATGAACTGAAGACGACGATCACTACTACAAAATTCCAGATCCGAGCCCTTAATCCACA
                      ____________________________________________________________
consensus             TTATGAACTGAAGACGACGATCACTACTACAAAATTCCAGATCCGAGCCCTTAATCCACA
 
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JMSF027G18+           GAAATTACGAACAACGAAGTACGAAACCTAGACTT                         
JMSF044M19+           GAAATTACGAACAACGAAGTACGAAACCTAGACTTCTGAAATAAACCTAAACAATAGTAG
JMSF052A20+           GAAATTACGAACAACGAAGTACGAAACCTAGACTTCTGAAATAAACCTAAACAATAGTAG
JMSF033P19+           GAAATTACGAACAACGAAGTACGAAACCTAGACTTCTGAAATAAACCTAAACAATAGTAG
JMSF009E11+           GAAATTACGAACAACGAAGTACGAAACCTAGACTTCTGAAATAAACCTAAACAATAGTAG
                      ____________________________________________________________
consensus             GAAATTACGAACAACGAAGTACGAAACCTAGACTTCTGAAATAAACCTAAACAATAGTAG
 
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JMSF044M19+           TAGGATTTAGGGTTCATGGCAGATTGGAAGACGGAGATAGGGAGAATCGGGACTGAGGTG
JMSF052A20+           TAGGATTTAGGGTTCATGGCAGATTGGAAGACGGAGATAGGGAGAATCGGGACTGAGGTG
JMSF033P19+           TAGGATTTAGGGTTCATGGCAGATTGGAAGACGGAGATAGGGAGAATCGGGACTGAGGTG
JMSF009E11+           TAGGATTTAGGGTTCATGGCAGATTGGAAGACGGAGATAGGGAGAATCGGGACTGAGGTG
                      ____________________________________________________________
consensus             TAGGATTTAGGGTTCATGGCAGATTGGAAGACGGAGATAGGGAGAATCGGGACTGAGGTG
 
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JMSF044M19+           AGAGAGAATCGGTGAGCGGATAGAGAAGGTTTGAGGCGATAGAATGCGAAAAGTCGGC  
JMSF052A20+           AGAGAGAATCGGTGAGCGGATAGAGAAGGTTTGAGGCGATAGAATGCGAAAAGTCGGC  
JMSF033P19+           AGAGAGAATCGGTGAGCGGATAGAGAAGGTTTGAGGCGATAGAATGCGAAAAGTCGGC  
JMSF009E11+           AGAGAGAATCGGTGAGCGGATAGAGAAGGTTTGAGGCGATAGAATGCGAAAAGTCGGCTC
                      ____________________________________________________________
consensus             AGAGAGAATCGGTGAGCGGATAGAGAAGGTTTGAGGCGATAGAATGCGAAAAGTCGGCTC