| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF008O08 | Sequence | 251 | 003566 (4) | ref|XP_009763010.1| | 8e-10 | PREDICTED: eukaryotic translation initiation factor 2A-like isoform X1 [Nicotia | 779 | 008562 (4) | ref|XP_011091567.1| | 1e-42 | PREDICTED: eukaryotic translation initiation factor 2A [Sesamum indicum] |
| JMSF030C19 | Sequence | 648 | 003566 (4) | ref|XP_009758482.1| | 7e-98 | PREDICTED: eukaryotic translation initiation factor 2A-like, partial [Nicotiana | 705 | 008562 (4) | ref|XP_011091567.1| | 9e-23 | PREDICTED: eukaryotic translation initiation factor 2A [Sesamum indicum] |
| JMSF042O02 | Sequence | 749 | 003566 (4) | ref|XP_009763010.1| | 5e-76 | PREDICTED: eukaryotic translation initiation factor 2A-like isoform X1 [Nicotia | 840 | 008562 (4) | emb|CDP10861.1| | 2e-44 | unnamed protein product [Coffea canephora] |
| JMSF047M14 | Sequence | 680 | 003566 (4) | ref|XP_009758482.1| | 7e-69 | PREDICTED: eukaryotic translation initiation factor 2A-like, partial [Nicotiana | 770 | 008562 (4) | ref|XP_011091567.1| | 9e-45 | PREDICTED: eukaryotic translation initiation factor 2A [Sesamum indicum] |
This contig is upended
. : . : . : . : . : . :
JMSF042O02+ TCTTAGAAAGCTCCAGTGCAGCTATTCCAGGAACACGA
____________________________________________________________
consensus TCTTAGAAAGCTCCAGTGCAGCTATTCCAGGAACACGA
. : . : . : . : . : . :
JMSF047M14+ TACCATCAAAAAGTTGTATCTCATTGGTT
JMSF042O02+ ACCCGTTGCACAATTCCTTTTGAGAAGTCTCTACCATCAAAAAGTTGTATCTCATTGGTT
____________________________________________________________
consensus ACCCGTTGCACAATTCCTTTTGAGAAGTCTCTACCATCAAAAAGTTGTATCTCATTGGTT
. : . : . : . : . : . :
JMSF047M14+ GCCAATCTGCATGCAGCCATTTCATCAGAGCTAAAGCGTACAGACGGCCTACAGAAAACA
JMSF042O02+ GCCAATCTGCATGCAGCCATTTCATCAGAGCTAAAGCGTACAGACGGCCTACAGAAAACA
____________________________________________________________
consensus GCCAATCTGCATGCAGCCATTTCATCAGAGCTAAAGCGTACAGACGGCCTACAGAAAACA
. : . : . : . : . : . :
JMSF047M14+ ACATATCACATGATAGATTTCCACAATTTGATATCAATTTCAGAAAATGGTAGGCCAAGA
JMSF042O02+ ACATATCACATGATAGATTTCCACAATTTGATATCAATTTCAGAAAATGGTAGGCCAAGA
____________________________________________________________
consensus ACATATCACATGATAGATTTCCACAATTTGATATCAATTTCAGAAAATGGTAGGCCAAGA
. : . : . : . : . : . :
JMSF047M14+ TAAGAAAAATGCCATACCATGTAGCTTTTGCCATGTTCTTCTGATACAACTGGTAAACAG
JMSF042O02+ TAAGAAAAATGCCATACCATGTAGCTTTTGCCATGTTCTTCTGATACAACTGGTAAACAG
JMSF030C19+ CCATGTAGCTTTTGCCATGTTCTTCTGATACAACTGGTAAACAG
____________________________________________________________
consensus TAAGAAAAATGCCATACCATGTAGCTTTTGCCATGTTCTTCTGATACAACTGGTAAACAG
. : . : . : . : . : . :
JMSF047M14+ ATTCGCCACTCACCACCTTCCACAAGACCACATTTTTGTCCTGTGGGGATGTGCATTTCT
JMSF042O02+ ATTCGCCACTCACCACCTTCCACAAGACCACATTTTTGTCCTGTGGGGATGTGCATTTCT
JMSF030C19+ ATTCGCCACTCACCACCTTCCACAAGACCACATTTTTGTCCTGTGGGGATGTGCATTTCT
____________________________________________________________
consensus ATTCGCCACTCACCACCTTCCACAAGACCACATTTTTGTCCTGTGGGGATGTGCATTTCT
. : . : . : . : . : . :
JMSF047M14+ GGAAGGTCTGGAGGTATGTTCCACAAGGAGAAATAACAGCAGCAAGCACATTGGGAATTT
JMSF042O02+ GGAAGGTCTGGAGGTATGTTCCACAAGGAGAAATAACAGCAGCAAGCACATTGGGAATTT
JMSF030C19+ GGAAGGTCTGGAGGTATGTTCCACAAGGAGAAATAACAGCAGCAAGCACATTGGGAATTT
____________________________________________________________
consensus GGAAGGTCTGGAGGTATGTTCCACAAGGAGAAATAACAGCAGCAAGCACATTGGGAATTT
. : . : . : . : . : . :
JMSF047M14+ CAAAACTCCTAATCTCTTTCAAGGTTTTACAATCATGCACACTAATTACTGAGTCTGATT
JMSF042O02+ CAAAACTCCTAATCTCTTTCAAGGTTTTACAATCATGCACACTAATTACTGAGTCTGATT
JMSF030C19+ CAAAACTCCTAATCTCTTTCAAGGTTTTACAATCATGCACACTAATTACTGAGTCTGATT
____________________________________________________________
consensus CAAAACTCCTAATCTCTTTCAAGGTTTTACAATCATGCACACTAATTACTGAGTCTGATT
. : . : . : . : . : . :
JMSF047M14+ TCATAACCATGAGTTTTGACCCATCTTCACTAAACTTTGCACTTGTACAAGGGACTGTAG
JMSF042O02+ TCATAACCATGAGTTTTGACCCATCTTCACTAAACTTTGCACTTGTACAAGGGACTGTAG
JMSF030C19+ TCATAACCATGAGTTTTGACCCATCTTCACTAAACTTTGCACTTGTACAAGGGACTGTAG
JMSF008O08+ AGGGACTGTAG
____________________________________________________________
consensus TCATAACCATGAGTTTTGACCCATCTTCACTAAACTTTGCACTTGTACAAGGGACTGTAG
. : . : . : . : . : . :
JMSF047M14+ CGAGCCTGATACTAGGTTGACCATTAGGGAAAGGCGGCCCATCCCAAATAGCATAACCTT
JMSF042O02+ CGAGCCTGATACTAGGTTGACCATTAGGGAAAGGCGGCCCATCCCAAATAGCATAACCTT
JMSF030C19+ CGAGCCTGATACTAGGTTGACCATTAGGGAAAGGCGGCCCATCCCAAATAGCATAACCTT
JMSF008O08+ CGAGCCTGATACTAGGTTGACCATTAGGGAAAGGCGGCCCATCCCAAATAGCATAACCTT
____________________________________________________________
consensus CGAGCCTGATACTAGGTTGACCATTAGGGAAAGGCGGCCCATCCCAAATAGCATAACCTT
. : . : . : . : . : . :
JMSF047M14+ CTGGTCCTCTTATCAAAATTTCCATTGCCGGCGAGGTCTCTGAAACTGCCATTTGAAGGT
JMSF042O02+ CTGGTCCTCTTATCAAAATTTCCATTGCCGGCGAGGTCTCTGAAACTGCCATTTGAAGGT
JMSF030C19+ CTGGTCCTCTTATCAAAATTTCCATTGCCGGCGAGGTCTCTGAAACTGCCATTTGAAGGT
JMSF008O08+ CTGGTCCTCTTATCAAAATTTCCATTGCCGGCGAGGTCTCTGAAACTGCCATTTGAAGGT
____________________________________________________________
consensus CTGGTCCTCTTATCAAAATTTCCATTGCCGGCGAGGTCTCTGAAACTGCCATTTGAAGGT
. : . : . : . : . : . :
JMSF047M14+ TTCAAAAATGCTCTCCAGTATCAAGATTCCCACCAGTCACTCAATAAGCAAAACTGAAAA
JMSF042O02+ TTCAAAAATGCTCTCCAGTATCAAGATTCCCACCAGTCACTCAATAAGCAAAACTGAAAA
JMSF030C19+ TTCAAAAATGCTCTCCAGTATCAAGATTCCCACCAGTCACTCAATAAGCAAAACTGAAAA
JMSF008O08+ TTCAAAAATGCTCTCCAGTATCAAGATTCCCACCAGTCACTCAATAAGCAAAACTGAAAA
____________________________________________________________
consensus TTCAAAAATGCTCTCCAGTATCAAGATTCCCACCAGTCACTCAATAAGCAAAACTGAAAA
. : . : . : . : . : . :
JMSF047M14+ GCAAACCAGTTGACGGCGGTTCCGGTCGGAGTTCTTCAGCGAAGTGAG
JMSF042O02+ GCAAACCAGTTGACGGCGGTTCCGGTCGGAGTTCTTCAGCGAAGTGAG
JMSF030C19+ GCAAACCAGTTGACGGCGGTTCCGGTCGGAGTTCTTCAGCGAAGTGAG
JMSF008O08+ GCAAACCAGTTGACGGCGGTTCCGGTCGGAGTTCTTCAGCGAAGTGAGTCGAGGCACCCC
____________________________________________________________
consensus GCAAACCAGTTGACGGCGGTTCCGGTCGGAGTTCTTCAGCGAAGTGAGTCGAGGCACCCC