| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF041I04 | Sequence | 345 | 003565 (8) | ref|XP_002266350.1| | 1e-31 | PREDICTED: thioredoxin Y1, chloroplastic [Vitis vinifera] emb|CBI18218.3| unname | 563 | 003565 (8) | ref|XP_006359806.1| | 2e-58 | PREDICTED: thioredoxin Y1, chloroplastic-like [Solanum tuberosum] |
| JMFF050G07 | Sequence | 647 | 003565 (8) | ref|XP_002266350.1| | 5e-72 | PREDICTED: thioredoxin Y1, chloroplastic [Vitis vinifera] emb|CBI18218.3| unname | 591 | 003565 (8) | ref|XP_010241685.1| | 5e-58 | PREDICTED: thioredoxin Y1, chloroplastic-like [Nelumbo nucifera] |
| JMFN025P13 | Sequence | 645 | 003565 (8) | ref|XP_002266350.1| | 1e-71 | PREDICTED: thioredoxin Y1, chloroplastic [Vitis vinifera] emb|CBI18218.3| unname | |||||
| JMSF008K20 | Sequence | 346 | 003565 (8) | ref|XP_002266350.1| | 4e-31 | PREDICTED: thioredoxin Y1, chloroplastic [Vitis vinifera] emb|CBI18218.3| unname | |||||
| JMSF009G05 | Sequence | 345 | 003565 (8) | ref|XP_002266350.1| | 4e-31 | PREDICTED: thioredoxin Y1, chloroplastic [Vitis vinifera] emb|CBI18218.3| unname | 681 | 003565 (8) | ref|XP_002266350.1| | 1e-51 | PREDICTED: thioredoxin Y1, chloroplastic [Vitis vinifera] emb|CBI18218.3| unname |
This contig is upended
. : . : . : . : . : . :
rJMSF009G05- TTACAGTGGCAAAAATAAACCTAAGA
____________________________________________________________
consensus TTACAGTGGCAAAAATAAACCTAAGA
. : . : . : . : . : . :
rJMFF050G07- TTAATTCGGTAAAAATTAAATTAGCTTGAATGACTATCACATCAAAAAATACA
rJMFF041I04- AATTCGGTAAAAATTAAATTAGCTTGAATGACTATCACATCAAAAAATACA
rJMSF009G05- GCAATGATTAATTCGGTAAAAATTAAATTAGCTTGAATGACTATCACATCAAAAAATACA
____________________________________________________________
consensus GCAATGATTAATTCGGTAAAAATTAAATTAGCTTGAATGACTATCACATCAAAAAATACA
. : . : . : . : . : . :
rJMFF050G07- ACCAACCGTGATCACTTTTCCCCAAGTAACAGGAATTTGACAAAAAGCTAGGACCAAATT
rJMFF041I04- ACCAACCGTGATCACTTTTCCCCAAGTAACAGGAATTTGACAAAAAGCTAGGACCAAATT
rJMSF009G05- ACCAACCGTGATCACTTTTCCCCAAGTAACAGGAATTTGACAAAAAGCTAGGACCAAATT
____________________________________________________________
consensus ACCAACCGTGATCACTTTTCCCCAAGTAACAGGAATTTGACAAAAAGCTAGGACCAAATT
. : . : . : . : . : . :
rJMFF050G07- CAATTAAAACCAAGCTTGAATGGCCTATCAAATAGGTCTTGTGCATTTCTGCCCAAACTT
rJMFF041I04- CAATTAAAACCAAGCTTGAATGGCCTATCAAATAGGTCTTGTGCATTTCTGCCCAAACTT
rJMSF009G05- CAATTAAAACCAAGCTTGAATGGCCTATCAAATAGGTCTTGTGCATTTCTGCCCAAACTT
JMFN025P13+ TAAAACCAAGCTTGAATGGCCTATCAAATAGGTCTTGT-CATTTCTGCCCAAAC-T
JMFF050G07+ TAAAACCAAGCTGNAATGGCCTATCAAATAGGTCTTGTGCATTTCTGCCCAAACTT
____________________________________________________________
consensus CAATTAAAACCAAGCTTGAATGGCCTATCAAATAGGTCTTGTGCATTTCTGCCCAAACTT
. : . : . : . : . : . :
rJMFF050G07- GGAAGCAAGGAAACACAATATTTGCACAGATGAGAGGAGAGATTCAGTACAGCTACTGTA
rJMFF041I04- GGAAGCAAGGAAACACAATATTTGCACAGATGAGAGGAGAGATTCAGTACAGCTACTGTA
rJMSF009G05- GGAAGCAAGGAAACACAATATTTGCACAGATGAGAGGAGAGATTCAGTACAGCTACTGTA
JMFN025P13+ GGAAGCAAGGAAACACAATATTTGCACAGATGAGAGGAGAGATTCAGTACAGCTACTGTA
JMFF050G07+ GGAAGCAAGGAAACACAATATTTGCACAGATGAGAGGAGAGATTCAGTACAGCTACTGTA
____________________________________________________________
consensus GGAAGCAAGGAAACACAATATTTGCACAGATGAGAGGAGAGATTCAGTACAGCTACTGTA
. : . : . : . : . : . :
rJMFF050G07- CAAGCTTGAGTGCATCCTCAATACGTTTGATTAAATTGTCAGCTGATAGTGCACCCTCAA
rJMFF041I04- CAAGCTTGAGTGCATCCTCAATACGTTTGATTAAATTGTCAGCTGATAGTGCACCCTCAA
rJMSF009G05- CAAGCTTGAGTGCATCCTCAATACGTTTGATTAAATTGTCAGCTGATAGTGCACCCTCAA
JMFN025P13+ CAAGCTTGAGTGCATCCTCAATACGTTTGATTAAATTGTCAGCTGATAGTGCACCCTCAA
JMFF050G07+ CAAGCTTGAGTGCATCCTCAATACGTTTGATTAAATTGTCAGCTGATAGTGCACCCTCAA
____________________________________________________________
consensus CAAGCTTGAGTGCATCCTCAATACGTTTGATTAAATTGTCAGCTGATAGTGCACCCTCAA
. : . : . : . : . : . :
rJMFF050G07- AGCGATCGCATGGTTTCCCATCCTTGAACAGAATGAATGTTGGCAGTGCCTGTA-TTTTG
rJMFF041I04- AGCGATCGCATGGTTTCCCATCCTTGAACAGAATGAATGTTGGCAGTGCCTGTA-TTTTG
rJMSF009G05- AGCGATCGCATGGTTTCCCATCCTTGAACAGAATGAATGTTGGCAGTGCCTGTATTTTTG
JMFN025P13+ AGCGATCGCATGGTTTCCCATCCTTGAACAGAATGAATGTTGGCAGTGCCTGTA-TTTTG
JMFF050G07+ AGCGATCGCATGGTTTCCCATCCTTGAACAGAATGAATGTTGGCAGTGCCTGTA-TTTTG
____________________________________________________________
consensus AGCGATCGCATGGTTTCCCATCCTTGAACAGAATGAATGTTGGCAGTGCCTGTA-TTTTG
. : . : . : . : . : . :
rJMFF050G07- TACCTGTCCGCAATGCTAGGATACTTTTCAGTATCAATTTTCACCACTTGAATTTTATCT
rJMFF041I04- TACCTGTCCGCAATGCTAGGATACTTTTCAGTATCAATTTTCACCACTTGAATTTTATCT
rJMSF009G05- TACCTGTCCGCAATGCTAGGATACTTTTCAGTATCAATTTTCACCACTTGAATTTTATCT
JMFN025P13+ TACCTGTCCGCAATGCTAGGATACTTTTCAGTATCAATTTTCACCACTTGAATTTTATCT
JMFF050G07+ TACCTGTCCGCAATGCTAGGATACTTTTCAGTATCAATTTTCACCACTTGAATTTTATCT
____________________________________________________________
consensus TACCTGTCCGCAATGCTAGGATACTTTTCAGTATCAATTTTCACCACTTGAATTTTATCT
. : . : . : . : . : . :
rJMFF050G07- TTCATTGCATTACCTACATCGTTGAGGATAGGAACCATGAACTGGCAAGGACCACACCAA
rJMFF041I04- TTCATTGCATTACCTACATCGTTGAGGATAGGAACCATGAACTGGCAAGGACCACACCAA
rJMSF009G05- TTCATTGCATTACCTACATCGTTGAGGATAGGAACCATGAACTGGCAAGGACCACACCAA
JMFN025P13+ TTCATTGCATTACCTACATCGTTGAGGATAGGAACCATGAACTGGCAAGGACCACACCAA
JMFF050G07+ TTCATTGCATTACCTACATCGTTGAGGATAGGAACCATGAACTGGCAAGGACCACACCAA
JMFF041I04+ CATTACCTACATCGTTGAGGATAGGAACCATGAACTGGCAAGGACCACACCAA
JMSF009G05+ TACATCGTTGAGGATAGGAACCATGAACTGGCAAGGACCACACCAA
JMSF008K20+ TACATCGTTGAGGATAGGAACCATGAACTGGCAAGGACCACACCAA
____________________________________________________________
consensus TTCATTGCATTACCTACATCGTTGAGGATAGGAACCATGAACTGGCAAGGACCACACCAA
. : . : . : . : . : . :
rJMFF050G07- GTTGCATAGAAGTCAACCAAAACTGGTTTGTCAGAATTTTCCAGAATATCATCAAAGGAA
rJMFF041I04- GTTGCATAGAAGTCAACCAAAACTGGTTTGTCAGAATTTTCCAGAATATCATCAAAGGAA
rJMSF009G05- GTTGCATAGAAGTCAACCAAAACTGGTTTGTCAGAATTTTCCAGAATATCATCAAAGGAA
JMFN025P13+ GTTGCATAGAAGTCAACCAAAACTGGTTTGTCAGAATTTTCCAGAATATCATCAAAGGAA
JMFF050G07+ GTTGCATAGAAGTCAACCAAAACTGGTTTGTCAGAATTTTCCAGAATATCATCAAAGGAA
JMFF041I04+ GTTGCATAGAAGTCAACCAAAACTGGTTTGTCAGAATTTTCCAGAATATCATCAAAGGAA
JMSF009G05+ GTTGCATAGAAGTCAACCAAAACTGGTTTGTCAGAATTTTCCAGAATATCATCAAAGGAA
JMSF008K20+ GTTGCATAGAAGTCAACCAAAACTGGTTTGTCAGAATTTTCCAGAATATCATCAAAGGAA
____________________________________________________________
consensus GTTGCATAGAAGTCAACCAAAACTGGTTTGTCAGAATTTTCCAGAATATCATCAAAGGAA
. : . : . : . : . : . :
rJMFF050G07- GAAAATGTCTCCTTCTTTGCTTGAAC
rJMFF041I04- GAAAATGTCTCCTTCTTTGTTTGAACCAGAGGA
rJMSF009G05- GAAAATGTCTCCTTCTTTGCTTGAACCAGAGGAAGAGTTCGGGGACGAGACTTATGATCG
JMFN025P13+ GAAAATGTCTCCTTCTTTGCTTGAACCAGAGGAAGAGTTCGGGGACGAGACTTATGATCG
JMFF050G07+ GAAAATGTCTCCTTCTTTGCTTGAACCAGAGGAAGAGTTCGGGGACGAGACTTATGATCG
JMFF041I04+ GAAAATGTCTCCTTCTTTGTTTGAACCAGAGGAAGAGTTCGGGGACGAGACTTATGATCG
JMSF009G05+ GAAAATGTCTCCTTCTTTGCTTGAACCAGAGGAAGAGTTCGGGGACGAGACTTATGATCG
JMSF008K20+ GAAAATGTCTCCTTCTTTGCTTGAACCAGAGGAAGAGTTCGGGGACGAGACTTATGATCG
____________________________________________________________
consensus GAAAATGTCTCCTTCTTTGCTTGAACCAGAGGAAGAGTTCGGGGACGAGACTTATGATCG
. : . : . : . : . : . :
rJMSF009G05- GAGCCGTGAAATCCAATCCGCACGCGGCGAAGTTGTCTAGGGAGTTGCAAGGACG
JMFN025P13+ GAGCCGTGAAATCCAATCCGCACGCGGCGAAGTTGTCTAGGGAGTTGCAAGGACGAAAAG
JMFF050G07+ GAGCCGTGAAATCCAATCCGCACGCGGCGAAGTTGTCTAGGGAGTTGCAAGGACGAAAAG
JMFF041I04+ GAGCCGTGAAATCCAATCCGCACGCGGCGAAGTTGTCTAGGGAGTTGCAAGGACGAAAAG
JMSF009G05+ GAGCCGTGAAATCCAATCCGCACGCGGCGAAGTTGTCTAGGGAGTTGCAAGGACGAAAAG
JMSF008K20+ GAGCCGTGAAATCCAATCCGCACGCGGCGAAGTTGTCTAGGGAGTTGCAAGGACGAAAAG
____________________________________________________________
consensus GAGCCGTGAAATCCAATCCGCACGCGGCGAAGTTGTCTAGGGAGTTGCAAGGACGAAAAG
. : . : . : . : . : . :
JMFN025P13+ CGAGAGAGCTTCGACGTTGAAGAAGAAGTCAACGGCGCGGCGGCTGAACGGTGTTTGGTG
JMFF050G07+ CGAGAGAGCTTCGACGTTGAAGAAGAAGTCAACGGCGCGGCGGCTGAACGGTGTTTGGTG
JMFF041I04+ CGAGAGAGCTTCGACGTTGAAGAAGAAGTCAACGGCGCGGCGGCTGAACGGTGTTTGGTG
JMSF009G05+ CGAGAGAGCTTCGACGTTGAAGAAGAAGTCAACGGCGCGGCGGCTGAACGGTGTTTGGTG
JMSF008K20+ CGAGAGAGCTTCGACGTTGAAGAAGAAGTCAACGGCGCGGCGGCTGAACGGTGTTTGGTG
____________________________________________________________
consensus CGAGAGAGCTTCGACGTTGAAGAAGAAGTCAACGGCGCGGCGGCTGAACGGTGTTTGGTG
. : . : . : . : . : . :
JMFN025P13+ TTCAAGGAGTAGAGAGCAGCGGCCTTTGCAGAAATCGC
JMFF050G07+ TTCAAGGAGTAGAGAGCAGCGGCCTTTGCAGAAATCGCCATTTTCTTC
JMFF041I04+ TTCAAGGAGTAGAGAGCAGCGGCCTTTGCAGAAATCGCCATTTTCTTC
JMSF009G05+ TTCAAGGAGTAGAGAGCAGCGGCCTTTGCAGAAATCGCCATTTTCTTC
JMSF008K20+ TTCAAGGAGTAGAGAGCAGCGGCCTTTGCAGAAATCGCCATTTTCTTCGAGCGAGGACCC
____________________________________________________________
consensus TTCAAGGAGTAGAGAGCAGCGGCCTTTGCAGAAATCGCCATTTTCTTCGAGCGAGGACCC