Contig 003556:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF042K15+                                                      ACCAAGTATTGTTGCGA
                      ____________________________________________________________
consensus                                                        ACCAAGTATTGTTGCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF042K15+           GTCTGCAGTTAATGGAGCCCAGACAACCTGTCCAACACTAAGTGACTTGTCTGTTTTCTC
                      ____________________________________________________________
consensus             GTCTGCAGTTAATGGAGCCCAGACAACCTGTCCAACACTAAGTGACTTGTCTGTTTTCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF042K15+           AACAGCCCGTACTTCCCCACTGTCAATGTTGATCACGAAAAGTGCGGGTTGTCTTTTCCC
                      ____________________________________________________________
consensus             AACAGCCCGTACTTCCCCACTGTCAATGTTGATCACGAAAAGTGCGGGTTGTCTTTTCCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF042K15+           AGCATAGGCTTCTCCCCAGCCCTCGTCCCAATCTCCTTGGCCTTTCCAGCTACCACAATC
                      ____________________________________________________________
consensus             AGCATAGGCTTCTCCCCAGCCCTCGTCCCAATCTCCTTGGCCTTTCCAGCTACCACAATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF042K15+           ATCCTGCGTCGAAGAATTCCCTTTCTTGAAACCAGAACATGTAAAGGTTGGCTTAGCGGG
                      ____________________________________________________________
consensus             ATCCTGCGTCGAAGAATTCCCTTTCTTGAAACCAGAACATGTAAAGGTTGGCTTAGCGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF042K15+           AAGAGGTTCTTCAGCAACATAAGCAATGAGAGTCTCGTCATAGTTCCACGAAATACCCTC
                      ____________________________________________________________
consensus             AAGAGGTTCTTCAGCAACATAAGCAATGAGAGTCTCGTCATAGTTCCACGAAATACCCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF042K15+           AAACCATCCATCTGAAAATACAGAACCATGAAGAGAGGCAGGAATATGAAACTCCTTTTC
                      ____________________________________________________________
consensus             AAACCATCCATCTGAAAATACAGAACCATGAAGAGAGGCAGGAATATGAAACTCCTTTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF042K15+           CACTCCACACTGACCCCAGATTTCAAAGCGGGTAGGGGAACCGATTTGAGAATTATGAAC
                      ____________________________________________________________
consensus             CACTCCACACTGACCCCAGATTTCAAAGCGGGTAGGGGAACCGATTTGAGAATTATGAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF042K15+           TACAAGCAACTTTGAACGTGAGGGAGACGGAACTATTATAGAGCCGCCTCCCATCTCTAT
                      ____________________________________________________________
consensus             TACAAGCAACTTTGAACGTGAGGGAGACGGAACTATTATAGAGCCGCCTCCCATCTCTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF042K15+           AGGGAAAGCAGCCCATTGAAATTCAATGGTATCACTGTGGCTTCTCGAGATTTGACTGGA
JMSF007H08+                              AATTCAATGGTATCACTGTGGCTTCTCGAGATTTGACTGGA
                      ____________________________________________________________
consensus             AGGGAAAGCAGCCCATTGAAATTCAATGGTATCACTGTGGCTTCTCGAGATTTGACTGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF042K15+           CAACACATATTTCCTTCTCTTATCGGCCTGGAGATTTGGCTGAGTAAGTGAGAACATAAC
JMSF007H08+           CAACACATATTTCCTTCTCTTATCGGCCTGGAGATTTGGCTGAGTAAGTGAGAACATAAC
                      ____________________________________________________________
consensus             CAACACATATTTCCTTCTCTTATCGGCCTGGAGATTTGGCTGAGTAAGTGAGAACATAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF042K15+           CTGAGAACCACCATTGGATGTGAAAGTCCATGCCTTGTCAATTGAAGGGATATTCATAAA
JMSF007H08+           CTGAGAACCACCATTGGATGTGAAAGTCCATGCCTTGTCAATTGAAGGGATATTCATAAA
                      ____________________________________________________________
consensus             CTGAGAACCACCATTGGATGTGAAAGTCCATGCCTTGTCAATTGAAGGGATATTCATAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF042K15+           ATCTTGGAGCAATCTAGACTGATAACTACATTCTTCCTCAGAAGATGCATCTAAACCCAT
JMSF007H08+           ATCTTGGAGCAATCTAGACTGATAACTACATTCTTCCTCAGAAGATGCATCTAAACCCAT
                      ____________________________________________________________
consensus             ATCTTGGAGCAATCTAGACTGATAACTACATTCTTCCTCAGAAGATGCATCTAAACCCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF042K15+           AGGAATTTCTTTTAAATTAAACTGGAAAGTTGGAGAGGTGAAATTGTTCTGCCACTGAGT
JMSF007H08+           AGGAATTTCTTTTAAATTAAACTGGAAAGTTGGAGAGGTGAAATTGTTCTGCCACTGAGT
                      ____________________________________________________________
consensus             AGGAATTTCTTTTAAATTAAACTGGAAAGTTGGAGAGGTGAAATTGTTCTGCCACTGAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF042K15+           AGCTTGGGTAGAAGATGAAGAGAGGAATCGAAGCAAAAGCAGTA                
JMSF007H08+           AGCTTGGGTAGAAGATGAAGAGAGGAATCGAAGCAAAAGCAGTATAAAGGGTAATGGGAC
                      ____________________________________________________________
consensus             AGCTTGGGTAGAAGATGAAGAGAGGAATCGAAGCAAAAGCAGTATAAAGGGTAATGGGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF007H08+           ATTTTCATCATCTTCATCTTTCTGCACTCTCAGTGTGGAATCTGAAGATTGAATGGGACC
                      ____________________________________________________________
consensus             ATTTTCATCATCTTCATCTTTCTGCACTCTCAGTGTGGAATCTGAAGATTGAATGGGACC