| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF014B22 | Sequence | 485 | 003552 (4) | ref|XP_006360989.1| | 1e-43 | PREDICTED: serine/threonine-protein kinase EDR1-like isoform X1 [Solanum tubero | |||||
| JMSF006O22 | Sequence | 296 | 003552 (4) | ||||||||
| JMSF026N01 | Sequence | 616 | 003552 (4) | ref|XP_006360989.1| | 1e-50 | PREDICTED: serine/threonine-protein kinase EDR1-like isoform X1 [Solanum tubero | 720 | 001383 (2) | ref|XP_009619439.1| | 328 | PREDICTED: serine/threonine-protein kinase EDR1 [Nicotiana tomentosiformis] |
| JMSF047E13 | Sequence | 699 | 003552 (4) | ref|XP_006360989.1| | 7e-82 | PREDICTED: serine/threonine-protein kinase EDR1-like isoform X1 [Solanum tubero | 413 | 001383 (2) | ref|XP_006360989.1| | 5e-20 | PREDICTED: serine/threonine-protein kinase EDR1-like isoform X1 [Solanum tubero |
This contig is upended
. : . : . : . : . : . :
JMSF047E13+ TAGCTTCATTAAAGCCCGACACTCCCTT
____________________________________________________________
consensus TAGCTTCATTAAAGCCCGACACTCCCTT
. : . : . : . : . : . :
JMSF047E13+ GACATAAAGGACACTCTCTCCTCCAGCTGTCTCAGTTCCACATCAGTAGCCCGGTTCACT
____________________________________________________________
consensus GACATAAAGGACACTCTCTCCTCCAGCTGTCTCAGTTCCACATCAGTAGCCCGGTTCACT
. : . : . : . : . : . :
JMSF047E13+ AAGATGACTTCATGGTCAATATCATCTGAAACAGAAATTGCTTCAAGATCCACTAAGCGT
____________________________________________________________
consensus AAGATGACTTCATGGTCAATATCATCTGAAACAGAAATTGCTTCAAGATCCACTAAGCGT
. : . : . : . : . : . :
JMSF047E13+ GGCATTTTTCCTTGAACCACTGCATTTGAATTAATTCCATGAACATCGTAGAACCCATCC
JMFF014B22+ ACCCATCC
JMSF026N01+ TTGAATTAATTCCATGAACATCGTAGAACCCATCC
____________________________________________________________
consensus GGCATTTTTCCTTGAACCACTGCATTTGAATTAATTCCATGAACATCGTAGAACCCATCC
. : . : . : . : . : . :
JMSF047E13+ ATCACTTTCTCATCATAATTTACAACATTGTAGTTCCAGTAACGAAGCGACAGAAATTCG
JMFF014B22+ ATCACTTTNTCATCATAATTTACAACATTGTAGTTCCAGTAACGAAGCGACAGAAATTCG
JMSF026N01+ ATCACTTTCTCATCATAATTTACAACATTGTAGTTCCAGTAACGAAGCGACAGAAATTCG
____________________________________________________________
consensus ATCACTTTCTCATCATAATTTACAACATTGTAGTTCCAGTAACGAAGCGACAGAAATTCG
. : . : . : . : . : . :
JMSF047E13+ ACGAGGGTCTCGGAAGGTGAACATCCCAAGCTAATCTGCTGTGCAGCCTTGATCTGAGCT
JMFF014B22+ ACGAGGGTCTCGGAAGGTGAACATCCCAAGCTAATCTGCTGTGCAGCCTTGATCTGAGCT
JMSF026N01+ ACGAGGGTCTCGGAAGGTGAACATCCCAAGCTAATCTGCTGTGCAGCCTTGATCTGAGCT
____________________________________________________________
consensus ACGAGGGTCTCGGAAGGTGAACATCCCAAGCTAATCTGCTGTGCAGCCTTGATCTGAGCT
. : . : . : . : . : . :
JMSF047E13+ GTTTCCGGATCTTCACGGGAATCCGGGTCGGAAACGCTGATCGCCAAAGCCAATTGGACC
JMFF014B22+ GTTTCCGGATCTTCACGGGAATCCGGGTCGGAAACGCTGATCGCCAAAGCCAATTGGACC
JMSF026N01+ GTTTCCGGATCTTCACGGGAATCCGGGTCGGAAACGCTGATCGCCAAAGCCAATTGGACC
____________________________________________________________
consensus GTTTCCGGATCTTCACGGGAATCCGGGTCGGAAACGCTGATCGCCAAAGCCAATTGGACC
. : . : . : . : . : . :
JMSF047E13+ TGAAACTCCTCCTCAAAGTAATTGAAATCCGGGGCCGAATCCGACGCCGAATTCGATTCC
JMFF014B22+ TGAAACTCCTCCTCAAAGTAATTGAAATCCGGGGGCGAATCCGACGCCGAATTCGATTCC
JMSF026N01+ TGAAACTCCTCCTCAAAGTAATTGAAATCCGGGGCCGAATCCGACGCCGAATTCGATTCC
____________________________________________________________
consensus TGAAACTCCTCCTCAAAGTAATTGAAATCCGGGGCCGAATCCGACGCCGAATTCGATTCC
. : . : . : . : . : . :
JMSF047E13+ CCAACCCTGGGCAATGCGGCGGACGAGGACGGCGTCGTTTCGGAGGAGGACGAAGCCGGA
JMFF014B22+ CCAACCCTGGGCAATGCGGCGGACGAGGACGGCGTCGTTTCGGAGGAGGACGAAGCCGGA
JMSF026N01+ CCAACCCTGGGCAATGCGGCGGACGAGGACGGCGTCGTTTCGGAGGAGGACGAAGCCGGA
____________________________________________________________
consensus CCAACCCTGGGCAATGCGGCGGACGAGGACGGCGTCGTTTCGGAGGAGGACGAAGCCGGA
. : . : . : . : . : . :
JMSF047E13+ GTCAACGCGGAGTCCGATTCCCGAAACGGCGGCGGATCAATCGGTGGTGGGCGGTGGTGC
JMFF014B22+ GTCAACGCGGAGTCCGATTCCCGAAACGGCGGCGGATCAATCGGTGGTGGGCGGTGGTGC
JMSF026N01+ GTCAACGCGGAGTCCGATTCCCGAAACGGCGGCGGATCAATCGGTGGTGGGCGGTGGTGC
____________________________________________________________
consensus GTCAACGCGGAGTCCGATTCCCGAAACGGCGGCGGATCAATCGGTGGTGGGCGGTGGTGC
. : . : . : . : . : . :
JMSF047E13+ GGGTGATGATGGGGATCGGTTACGCCACCGCCGATGTGAAGTTTCCGGAGTAAATGCTTC
JMFF014B22+ GGGTGATGATGGGGATCGGTTACGCCACCGCCGATGTGAAGTTTCCGGAGTAAATGCTTC
JMSF026N01+ GGGTGATGATGGGGATCGGTTACGCCACCGCCGATGTGAAGTTTCCGGAGTAAATGCTTC
JMSF006O22+ GGGATCGGTTACGCCACCGCCGATGTGAAGTTTCCGGAGTAAATGCTTC
____________________________________________________________
consensus GGGTGATGATGGGGATCGGTTACGCCACCGCCGATGTGAAGTTTCCGGAGTAAATGCTTC
. : . : . : . : . : . :
JMSF047E13+ ATCTTTGACATGGGGTCTCATCGACGAGGGAGAAGAAATCCAGATTGGATTTTTCTTGCT
JMFF014B22+ ATCTTTGACATGGGGTCTCATCGACGAGGGAGAAGAAATCCAGATTGGATTTTTCTT
JMSF026N01+ ATCTTTGACATGGGGTCTCATCGACGAGGGAGAAGAAATCCAGATTGGATTTTTCTTGCT
JMSF006O22+ ATCTTTGACATGGGGTCTCATCGACGAGGGAGAAGAAATCCAGATTGGATTTTTCTTGCT
____________________________________________________________
consensus ATCTTTGACATGGGGTCTCATCGACGAGGGAGAAGAAATCCAGATTGGATTTTTCTTGCT
. : . : . : . : . : . :
JMSF047E13+ CTCAACTGCT
JMSF026N01+ CTCAACTGCTAGTCAGCGCTATGGGGGTTTGGGTGGGTGAGGGCGAGGGTGAGAGAGAGG
JMSF006O22+ CTCAACTGCTAGTCAGCGCTATGGGGGTTTGGGTGGGTGAGGGCGAGGGTGAGAGAGAGG
____________________________________________________________
consensus CTCAACTGCTAGTCAGCGCTATGGGGGTTTGGGTGGGTGAGGGCGAGGGTGAGAGAGAGG
. : . : . : . : . : . :
JMSF026N01+ GCGAGAGAGAGGGGGCGGATAAGCCGCGAAGGTGAGTTTC
JMSF006O22+ GCGAGAGAGAGGGGGCGGATAAGCCGCGAAGGTGAGTTTCGAGTCTTGTTCGTGAAGGTA
____________________________________________________________
consensus GCGAGAGAGAGGGGGCGGATAAGCCGCGAAGGTGAGTTTCGAGTCTTGTTCGTGAAGGTA
. : . : . : . : . : . :
JMSF006O22+ CCACCAGTAATGGTGGAATTAAATTAACTGCACATATTCTTCCCTCCAATTAGATTTACC
____________________________________________________________
consensus CCACCAGTAATGGTGGAATTAAATTAACTGCACATATTCTTCCCTCCAATTAGATTTACC