Contig 003551:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN003A15Sequence554003551 (2)ref|XP_006485938.1|4e-68PREDICTED: RNA-binding protein 38-like isoform X1 [Citrus sinensis]
JMSF006M01Sequence392003551 (2)ref|XP_006340455.1|6e-30PREDICTED: RNA-binding protein 38-like isoform X2 [Solanum tuberosum]374004963 (18)gb|AAD10247.1|3e-16calmodulin [Phaseolus vulgaris]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN003A15+                                       GAGAATACCCATAGAAAGGAACAGCTTGGTGA
                      ____________________________________________________________
consensus                                         GAGAATACCCATAGAAAGGAACAGCTTGGTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN003A15+           TTCGGGTGGCGCCGGTGATGGAACGGGGAAGCAGCCACCGCCTGCGGCGGCGCTCCTGTT
                      ____________________________________________________________
consensus             TTCGGGTGGCGCCGGTGATGGAACGGGGAAGCAGCCACCGCCTGCGGCGGCGCTCCTGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN003A15+           GGATAGTACCATTGTACGTAATTTGGGGGTGGCGTCGAGGTAGCTCTTGCTCCAATGTTG
                      ____________________________________________________________
consensus             GGATAGTACCATTGTACGTAATTTGGGGGTGGCGTCGAGGTAGCTCTTGCTCCAATGTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN003A15+           TGCCCTTGTGGAGGCGGGGAGGTAGTGGTGGTGGGAGGTGGTTTGGGGCGGCGGGCGCCG
                      ____________________________________________________________
consensus             TGCCCTTGTGGAGGCGGGGAGGTAGTGGTGGTGGGAGGTGGTTTGGGGCGGCGGGCGCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN003A15+           AGAGAAGACAGGTTGCAGTTGGCACGGCGGCCGTTGATGACCGGCGACGGATCGCCGCAA
                      ____________________________________________________________
consensus             AGAGAAGACAGGTTGCAGTTGGCACGGCGGCCGTTGATGACCGGCGACGGATCGCCGCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN003A15+           GCTTTCCGGGCGGACTCGGCATCCTTAAAAGTGACAAAACCATAGCCCTTGGATCTGCCG
JMSF006M01+                                       AAGTAACAAAACCATAGCCTTNGGATCTGCCG
                      ____________________________________________________________
consensus             GCTTTCCGGGCGGACTCGGCATCCTTAAAAGTGACAAAACCATAGCCTTTGGATCTGCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN003A15+           GTGAGCTTGTCGGAGATGATTACGGCCTCCAAGATCTCGCCGTACTTGTCGAAGTGCTCT
JMSF006M01+           GTGAGCTTGTTGGAGATGATGACAGCCTCCAAAATCTCACCAAACTTCTCAAAGTGCTCT
                      ____________________________________________________________
consensus             GTGAGCTTGTTGGAGATGATTACGGCCTCCAAGATCTCGCCGTACTTGTCGAAGTGCTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN003A15+           CTCATGGTCTCCAATGGCGTCTCCCATGCCAGCCCTCCGACAAACACCTTCGTCAACGTT
JMSF006M01+           CTCATGGCCTCCTTCGGCGTCTCCCACGCCAACCCTCCGACGAACACCTTCGTCAACGTG
                      ____________________________________________________________
consensus             CTCATGGTCTCCTTTGGCGTCTCCCATGCCAGCCCTCCGACGAACACCTTCGTCAACGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN003A15+           GTGTC                                                       
JMSF006M01+           GTGTCACCCAAGTTATTCTGCCCGGCGACGACGCTGCTGTTAAGGTTGCTCATTGTCATC
                      ____________________________________________________________
consensus             GTGTCACCCAAGTTATTCTGCCCGGCGACGACGCTGCTGTTAAGGTTGCTCATTGTCATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF006M01+           TCCGAACCCAATCCACCACAATCTCCCTATATATATAACCTCGCACTCTGCAAACCTTAA
                      ____________________________________________________________
consensus             TCCGAACCCAATCCACCACAATCTCCCTATATATATAACCTCGCACTCTGCAAACCTTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF006M01+           TTAGAATAGAATAGAAGAGAGAGAGAAAGAGAGTCAACAAGGGGTTTGAGAAGAAATGGC
                      ____________________________________________________________
consensus             TTAGAATAGAATAGAAGAGAGAGAGAAAGAGAGTCAACAAGGGGTTTGAGAAGAAATGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF006M01+           GAGAGATTACATATATAAACAGGCCAGGGAGATGGAAGTAGTGGGGAGGGAGGTAGTGTC
                      ____________________________________________________________
consensus             GAGAGATTACATATATAAACAGGCCAGGGAGATGGAAGTAGTGGGGAGGGAGGTAGTGTC