| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF020G14 | Sequence | 538 | 003550 (8) | 804 | 023340 | gb|KJB35043.1| | 4e-37 | hypothetical protein B456_006G096900 [Gossypium raimondii] gb|KJB35044.1| hypoth | |||
| JMFS026A01 | Sequence | 621 | 003550 (8) | ||||||||
| JMFS142C01 | Sequence | 625 | 003550 (8) | ref|XP_006343037.1| | 2e-09 | PREDICTED: RNA polymerase II-associated factor 1 homolog [Solanum tuberosum] | |||||
| JMSF002B13 | Sequence | 267 | 003550 (8) | 784 | 017048 | gb|KJB35043.1| | 7e-52 | hypothetical protein B456_006G096900 [Gossypium raimondii] gb|KJB35044.1| hypoth | |||
| JMSF003K05 | Sequence | 430 | 003550 (8) | 720 | 007021 (3) | emb|CDO97975.1| | 3e-89 | unnamed protein product [Coffea canephora] | |||
| JMSF006K06 | Sequence | 382 | 003550 (8) | 518 | 007021 (3) | emb|CDO97975.1| | 7e-48 | unnamed protein product [Coffea canephora] | |||
| JMSF035E14 | Sequence | 662 | 003550 (8) | 748 | 017213 | emb|CDO97975.1| | 5e-102 | unnamed protein product [Coffea canephora] | |||
| JMSF048J24 | Sequence | 654 | 003550 (8) | 730 | 007021 (3) | emb|CDO97975.1| | 2e-91 | unnamed protein product [Coffea canephora] | |||
This contig is upended
. : . : . : . : . : . :
JMFS142C01+ ATGGAACCATGAC
____________________________________________________________
consensus ATGGAACCATGAC
. : . : . : . : . : . :
JMFS142C01+ CCTTCACTCCAGAAGTTAACATTTGGGTCTTCTGCAGCACCTTGTTCTGGGATTCTTTTA
____________________________________________________________
consensus CCTTCACTCCAGAAGTTAACATTTGGGTCTTCTGCAGCACCTTGTTCTGGGATTCTTTTA
. : . : . : . : . : . :
JMFS142C01+ AATGATGCCTATGTTTCTCTTCATGCCTTTGTTTCTCATACTCTCTCTTCTTCCGCAACC
____________________________________________________________
consensus AATGATGCCTATGTTTCTCTTCATGCCTTTGTTTCTCATACTCTCTCTTCTTCCGCAACC
. : . : . : . : . : . :
JMFS142C01+ TCCTCTCTTCCTCTGTCTCAACTCTTCCAGAAGGAGCATTCGGTTTCTTCACTGGCATGG
____________________________________________________________
consensus TCCTCTCTTCCTCTGTCTCAACTCTTCCAGAAGGAGCATTCGGTTTCTTCACTGGCATGG
. : . : . : . : . : . :
JMFS142C01+ GAGGAACAGGAGGTTTCTGCTTAGAGGGTATCCCGTGATTCCCATGCCCTGATTCTCGCC
____________________________________________________________
consensus GAGGAACAGGAGGTTTCTGCTTAGAGGGTATCCCGTGATTCCCATGCCCTGATTCTCGCC
. : . : . : . : . : . :
JMFS142C01+ ACCCAGAATCCCTTCCATCCTTGGGAGCTGCTTTCTCAGCGGCAGGCCTGCTTTCATTAC
____________________________________________________________
consensus ACCCAGAATCCCTTCCATCCTTGGGAGCTGCTTTCTCAGCGGCAGGCCTGCTTTCATTAC
. : . : . : . : . : . :
JMFS142C01+ TTGGATGCGCTGGGGGGGCTGATGAAGGGGGTGGTGGGGGTGAAGAAGGTGGCGGAGGAG
____________________________________________________________
consensus TTGGATGCGCTGGGGGGGCTGATGAAGGGGGTGGTGGGGGTGAAGAAGGTGGCGGAGGAG
. : . : . : . : . : . :
JMFS142C01+ GAGGAATTGCTGAATTTGGGGGAGGAGAAGAAGGTGGAGGAGGTGGGGGTGGCGGTTGTA
JMSF035E14+ GAGGAGGTGGGGGTGGCGGTTGTA
JMSF048J24+ GTA
____________________________________________________________
consensus GAGGAATTGCTGAATTTGGGGGAGGAGAAGAAGGTGGAGGAGGTGGGGGTGGCGGTTGTA
. : . : . : . : . : . :
JMFS142C01+ AATGCTGGTGTTGGTTGTATTGCGAGTATTGAGAAGAAGGATAATACACTGGAGCTGGGG
JMSF035E14+ AATGCTGGTGTTGGTTGTATTGCGAGTATTGAGAAGAAGGATAATACACTGGAGCTGGGG
JMSF048J24+ AATGCTGGTGTTGGTTGTATTGCGAGTATTGAGAAGAAGGATAATACACTGGAGCTGGGG
____________________________________________________________
consensus AATGCTGGTGTTGGTTGTATTGCGAGTATTGAGAAGAAGGATAATACACTGGAGCTGGGG
. : . : . : . : . : . :
JMFS142C01+ GAGCAGCTTGCGGTGGCGGTGGTGGAGGAGGGTACGAAGAATCCGGCGGAGGCGGGGGTG
JMSF035E14+ GAGCAGCTTGCGGTGGCGGTGGTGGAGGAGGGTACGAAGAATCCGGCGGAGGCGGGGGTG
JMFF020G14+ AGGCGGGGGTG
JMSF048J24+ GAGCAGCTTGCGGTGGCGGTGGTGGAGGAGGGTACGAAGAATCCGGCGGAGGCGGGGGTG
____________________________________________________________
consensus GAGCAGCTTGCGGTGGCGGTGGTGGAGGAGGGTACGAAGAATCCGGCGGAGGCGGGGGTG
. : . : . : . : . : . :
JMFS142C01+ GCGGATACTGATGAGACTGGGGTGGCGGCAGCGGAACATGATTCCTCGGCGGAAGAGGGC
JMSF035E14+ GCGGATACTGATGAGACTGGGGTGGCGGCAGCGGAACATGATTCCTCGGCGGAAGAGGGC
JMFF020G14+ GCGGATACTGATGAGACTGGGGTGGCGGCAGCGGAACATGATTCCTCGGCGGAAGAGGGC
JMSF048J24+ GCGGATACTGATGAGACTGGGGTGGCGGCAGCGGAACATGATTCCTCGGCGGAAGAGGGC
JMFS026A01+ CAGCGGAACATGATTCCTCGGCGGAAGAGGGC
____________________________________________________________
consensus GCGGATACTGATGAGACTGGGGTGGCGGCAGCGGAACATGATTCCTCGGCGGAAGAGGGC
. : . : . : . : . : . :
JMFS142C01+ CGCTAAAATGCG
JMSF035E14+ CGCTAAAATGCGGCGGTGCATGTTGATAATTACCGTATCCCCAATTCTGAGATGGCTGAT
JMFF020G14+ CGNTAAAATGCGGCGGTGCATGTTGATAATTACCGTATCCCCAATTCTGAGATGGCTGAT
JMSF048J24+ CGCTAAAATGCGGCGGTGCATGTTGATAATTACCGTATCCCCAATTCTGAGATGGCTGAT
JMFS026A01+ CGCTAAAATGAGGCGGTGCATGTTGATAATTACCGTATCCCCAATTCTGAGATGGCTGAT
____________________________________________________________
consensus CGCTAAAATGCGGCGGTGCATGTTGATAATTACCGTATCCCCAATTCTGAGATGGCTGAT
. : . : . : . : . : . :
JMSF035E14+ TCCCTCGCGGCTGCCCTGCGGTGGATGCTGGCGGGGGAGGTTGCAGAGGATTCTGATTCG
JMFF020G14+ TCCCTCGCGGCTGCCCTGCGGTGGATGCTGGCGGGGGAGGTTGCAGAGGATTCTGATTCG
JMSF048J24+ TCCCTCGCGGCTGCCCTGCGGTGGATGCTGGCGGGGGAGGTTGCAGAGGATTCTGATTCG
JMFS026A01+ TCCCTCGCGGCTGCCCTGCGGTGGATGCTGGCGGGGGAGGTTGCAGAGGATTCTGATTCG
____________________________________________________________
consensus TCCCTCGCGGCTGCCCTGCGGTGGATGCTGGCGGGGGAGGTTGCAGAGGATTCTGATTCG
. : . : . : . : . : . :
JMSF035E14+ GCGGTGGGGGAGGAGCAAACGCGGGTTGCGACGGGGGCTGGAATGGCCTATAAGAATCCA
JMFF020G14+ GCGGTGGGGGAGGAGCAAACGCGGGTTGCGACGGGGGCTGGAATGGCCTATAAGAATCCA
JMSF048J24+ GCGGTGGGGGAGGAGCAAACGCGGGTTGCGACGGGGGCTGGAATGGCCTATAAGAATCCA
JMFS026A01+ GCGGTGGGGGAGGAGCAAACGCGGGTTGCGACGGGGGCTGGAATGGCCTATAAGAATCCA
____________________________________________________________
consensus GCGGTGGGGGAGGAGCAAACGCGGGTTGCGACGGGGGCTGGAATGGCCTATAAGAATCCA
. : . : . : . : . : . :
JMSF035E14+ TCACCACCGCCAGCCCTAGCTATACACTAATCCACCAAAGTTTCCCACAAAGCACACACT
JMFF020G14+ TCACCACCGCCAGCCCTAGCTATACACTAATCCACCAAAGTTTCCCACAAAGCACACACT
JMSF048J24+ TCACCACCGCCAGCCCTAGCTATACACTAATCCACCAAAGTTTCCCACAAAGCACACACT
JMFS026A01+ TCACCACCGCCAGCCCTAGCTATACACTAATCCACCAAAGTTTCCCACAAAGCACACACT
JMSF003K05+ CACCGCCAGCCCTAGCTATACACTAATCCACCAAAGTTTCCCACAAAGCACACACT
____________________________________________________________
consensus TCACCACCGCCAGCCCTAGCTATACACTAATCCACCAAAGTTTCCCACAAAGCACACACT
. : . : . : . : . : . :
JMSF035E14+ AATACCCTAGGAGAGAGAAAACCATCAAATTTACCTTCTATTCAACTTGCAATCCCAATC
JMFF020G14+ AATACCCTAGGAGAGAGAAAACCATCAAATTTACCTTCTATTCAACTTGCAATCCCAATC
JMSF048J24+ AATACCCTAGGAGAGAGAAAACCATCAAATTTACCTTCTATTCAACTTGCAATCCCAATC
JMFS026A01+ AATACCCTAGGAGAGAGAAAACCATCAAATTTACCTTCTATTCAACTTGCAATCCCAATC
JMSF003K05+ AATACCCTAGGAGAGAGAAAACCATCAAATTTACCTTCTATTCAACTTGCAATCCCAATC
JMSF006K06+ TATTCAACTTGCAATCCCAATC
____________________________________________________________
consensus AATACCCTAGGAGAGAGAAAACCATCAAATTTACCTTCTATTCAACTTGCAATCCCAATC
. : . : . : . : . : . :
JMSF035E14+ TTTCACCTCACCACTTCCCTTCCCTACACGAACATCTGCACTGCATCAACGAGCAAACCC
JMFF020G14+ TTTCACCTCACCACTTCCCTTCCCTACACGAACATCTGCACTGCATCAACGAGCAAACCC
JMSF048J24+ TTTCACCTCACCACTTCCCTTCCCTACACGAACATCTGCACTGCATCAACGAGCAAACCC
JMFS026A01+ TTTCACCTCACCACTTCCCTTCCCTACACGAACATCTGCACTGCATCAACGAGCAAACCC
JMSF003K05+ TTTCACCTCACCACTTCCCTTCCCTACACGAACATCTGCACTGCATCAACGAGCAAACCC
JMSF002B13+ AACGAGCAAACCC
JMSF006K06+ TTTCACCTCACCACTTCCCTTCCCTACACGAACATCTGCACTGCATCAACGAGCAAACCC
____________________________________________________________
consensus TTTCACCTCACCACTTCCCTTCCCTACACGAACATCTGCACTGCATCAACGAGCAAACCC
. : . : . : . : . : . :
JMSF035E14+ TCGACAAAT
JMFF020G14+ TCGACAAATCTGGAAGCGAAATCGGAGCTTTAGCTAGATCAACACCGCGAAAGCAATCGA
JMSF048J24+ TCGACAAATCTGGAAGCGAAATCGGAGCTTTAGCTAGATCAACACCGCGAAAGCAATCGA
JMFS026A01+ TCGACAAATCTGGAAGCGAAATCGGAGCTTTAGCTAGATCAACACCGCGAAAGCAATCGA
JMSF003K05+ TCGACAAATCTGGAAGCGAAATCGGAGCTTTAGCTAGATCAACACCGCGAAAGCAATCGA
JMSF002B13+ TCGACAAATCTGGAAGCGAAATCGGAGCTTTAGCTAGATCAACACCGCGAAAGCAATCGA
JMSF006K06+ TCGACAAATCTGGAAGCGAAATCGGAGCTTTAGCTAGATCAACACCGCGAAAGCAATCGA
____________________________________________________________
consensus TCGACAAATCTGGAAGCGAAATCGGAGCTTTAGCTAGATCAACACCGCGAAAGCAATCGA
. : . : . : . : . : . :
JMFF020G14+ AAATTTCAAATACTTTGAGATTCAGAGCAGAAAACACAAATGAAACC
JMSF048J24+ AAATTTCAAATACTTTGAGATTCAGAGCAGAAAACACAAATGAAACCTC
JMFS026A01+ AAATTTCAAATACTTTGAGATTCAGAGCAGAAAACACAAATGAAACCTCAAGTCGGAAAA
JMSF003K05+ AAATTTCAAATACTTTGAGATTCAGAGCAGAAAACACAAATGAAACCTCAAGTCGGAAAA
JMSF002B13+ AAATTTCAAATACTTTGAGATTCAGAGCAGAAAACACAAATGAAACCTCAAGTCGGAAAA
JMSF006K06+ AAATTTCAAATACTTTGAGATTCAGAGCAGAAAACACAAATGAAACCTCAAGTCGGAAAA
____________________________________________________________
consensus AAATTTCAAATACTTTGAGATTCAGAGCAGAAAACACAAATGAAACCTCAAGTCGGAAAA
. : . : . : . : . : . :
JMFS026A01+ GACGAAATTCACGAGATATACATATATCGTCTGTATACGTATATATATGCAGGTGTAGTA
JMSF003K05+ GACGAAATTCACGAGATATACATATATCGTCTGTATACGTATATATATGCAGGTGTAGTA
JMSF002B13+ GACGAAATTCACGAGATATACATATATCGTCTGTATACGTATATATATGCAGGTGTAGTA
JMSF006K06+ GACGAAATTCACGAGATATACATATATCGTCTGTATACGTATATATATGCAGGTGTAGTA
____________________________________________________________
consensus GACGAAATTCACGAGATATACATATATCGTCTGTATACGTATATATATGCAGGTGTAGTA
. : . : . : . : . : . :
JMFS026A01+ TTAAATATGAGACTGAGACGACTTTTTACAGTTTACGGCTGGGAAAAGC
JMSF003K05+ TTAAATATGAGACTGAGACGACTTTTTACAGTTTACGGCTGGGAAAAGCGAGCAGATAGT
JMSF002B13+ TTAAATATGAGACTGAGACGACTTTTTACAGTTTACGGCTGGGAAAAGCGAGCAGATAGT
JMSF006K06+ TTAAATATGAGACTGAGACGACTTTTTACAGTTTACGGCTGGGAAAAGCGAGCAGATAGT
____________________________________________________________
consensus TTAAATATGAGACTGAGACGACTTTTTACAGTTTACGGCTGGGAAAAGCGAGCAGATAGT
. : . : . : . : . : . :
JMSF003K05+ TTAAGCAGCGGAT
JMSF002B13+ TTAAGCAGCGGAT
JMSF006K06+ TTAAGCAGCGGATAACGACGACGATGAAGAGATGCCCTCATAAGTAAAGCAGCAGCCATC
____________________________________________________________
consensus TTAAGCAGCGGATAACGACGACGATGAAGAGATGCCCTCATAAGTAAAGCAGCAGCCATC