Contig 003544:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF031P02+                        TTTTTTTTTTCCTTAATCAAATAGGGAGCATTAAAGAAGATAGATAC
                      ____________________________________________________________
consensus                          TTTTTTTTTTCCTTAATCAAATAGGGAGCATTAAAGAAGATAGATAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF031P02+           AGTACTTTTTTTTCTGCTTCTAGAGATGGCATCCAAAGCAATTACAGGTCTTGGGAGTGA
                      ____________________________________________________________
consensus             AGTACTTTTTTTTCTGCTTCTAGAGATGGCATCCAAAGCAATTACAGGTCTTGGGAGTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF031P02+           AAGAGCAGAAGCCAAAGGGCCTGTTTGGGATGTTGCAGTTGATGGCATAGCAGCAGGGGG
                      ____________________________________________________________
consensus             AAGAGCAGAAGCCAAAGGGCCTGTTTGGGATGTTGCAGTTGATGGCATAGCAGCAGGGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF031P02+           TTGGGAGGCAGTAGCCTTTTCCGCCGCCGCCGCCGCCGCAGCAGGTGCAGAGGGCGCAAA
                      ____________________________________________________________
consensus             TTGGGAGGCAGTAGCCTTTTCCGCCGCCGCCGCCGCCGCAGCAGGTGCAGAGGGCGCAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF031P02+           TCTGGAAGCTGCCGAGCTTCCTCCGGGTGTCATTCAGCATCACCGCCATCTTCTCCGCCT
                      ____________________________________________________________
consensus             TCTGGAAGCTGCCGAGCTTCCTCCGGGTGTCATTCAGCATCACCGCCATCTTCTCCGCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF031P02+           TCCCCGGCTCGAGAAGCGGCACCCACCCTTCATTTTCCGGCGCCGCCGACACGTTTGCCG
JMSF013H04+                                                                   GCCG
JMSF006C01+                                                                   GCCG
                      ____________________________________________________________
consensus             TCCCCGGCTCGAGAAGCGGCACCCACCCTTCATTTTCCGGCGCCGCCGACACGTTTGCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF031P02+           GAGAGTCTATGGTTCCATGGGAAGTAATGAATAGCAGGATGAATAGAAGGGAGGAGAGAA
JMSF013H04+           GAGAGTCTATGGTTCCATGGGAAGTAATGAATAGCAGGATGAATAGAAGGGAGGAGAGAA
JMSF006C01+           GAGAGTCTATGGTTCCATGGGAAGTAATGAATAGCAGGATGAATAGAAGGGAGGAGAGAA
                      ____________________________________________________________
consensus             GAGAGTCTATGGTTCCATGGGAAGTAATGAATAGCAGGATGAATAGAAGGGAGGAGAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF031P02+           CCCTACTACTGGCAGTAGGAGACATTTTTGTGCTTTTGAATTTCTTTCCTTTTTATCTTT
JMSF013H04+           CCCTACTACTGGCAGTAGGAGACATTTTTGTGCTTTTGAATTTCTTTCCTTTTTATCTTT
JMSF006C01+           CCCTACTACTGGCAGTAGGAGACATTTTTGTGCTTTTGAATTTCTTTCCTTTTTATCTTT
                      ____________________________________________________________
consensus             CCCTACTACTGGCAGTAGGAGACATTTTTGTGCTTTTGAATTTCTTTCCTTTTTATCTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF031P02+           TTCTCTCTTTCCCTTTCAGCTAGCGGTGGTGGACGGTGGTGGTGGTGGAGGAAACAGTGG
JMSF013H04+           TTCTCTCTTTCCCTTTCAGCTAGCGGTGGTGGACGGTGGTGGTGGTGGAGGAAACAGTGG
JMSF006C01+           TTCTCTCTTTCCCTTTCAGCTAGCGGTGGTGGACGGTGGTGGTGGTGGAGGAAACAGTGG
                      ____________________________________________________________
consensus             TTCTCTCTTTCCCTTTCAGCTAGCGGTGGTGGACGGTGGTGGTGGTGGAGGAAACAGTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF031P02+           GTGTTTGGGCTTTAGGCCTACAAATCTTCTTCCCCCAAATCTTGAAAATGTGGGTG    
JMSF013H04+           GTGTTTGGGCTTTAGGCCTACAAATCTTCTTCCCCCAAATCTTGAAAATGTGGGTG    
JMSF006C01+           GTGTTTGGGCTTTAGGCCTACAAATCTTCTTCCCCCAAATCTTGAAAATGTGGGTGGCTC
                      ____________________________________________________________
consensus             GTGTTTGGGCTTTAGGCCTACAAATCTTCTTCCCCCAAATCTTGAAAATGTGGGTGGCTC