Contig 003542:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF036B23+                                                                  CAAGT
                      ____________________________________________________________
consensus                                                                    CAAGT
 
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JMSF036B23+           AACCANGGAATCAAACGGGAATGCACGTAGGTATCCTAGTCTACGAACCATTCTCATGAT
                      ____________________________________________________________
consensus             AACCANGGAATCAAACGGGAATGCACGTAGGTATCCTAGTCTACGAACCATTCTCATGAT
 
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JMSF036B23+           TAATAAACAAGAATTAGAACAAAGAATTGCCCCACTTTCGTGGTGAATCAATTCCAAGTC
                      ____________________________________________________________
consensus             TAATAAACAAGAATTAGAACAAAGAATTGCCCCACTTTCGTGGTGAATCAATTCCAAGTC
 
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JMSF036B23+           CATCAAGCACACAAAGCATCTAAAGCCCCCAATTTCCCCTATTTTCATAGGAAGAAATCG
                      ____________________________________________________________
consensus             CATCAAGCACACAAAGCATCTAAAGCCCCCAATTTCCCCTATTTTCATAGGAAGAAATCG
 
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JMSF036B23+           GGTCTATGCAAGGGGTGGCTTGGATTCATCACCCAACTCTCGTTGAAGCAAGGAATCCTC
                      ____________________________________________________________
consensus             GGTCTATGCAAGGGGTGGCTTGGATTCATCACCCAACTCTCGTTGAAGCAAGGAATCCTC
 
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JMSF036B23+           CAAAAACAAGCTAATGAATGCGTACATCAAACATTAACAAGATATAAACACAACACCTTC
                      ____________________________________________________________
consensus             CAAAAACAAGCTAATGAATGCGTACATCAAACATTAACAAGATATAAACACAACACCTTC
 
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JMSF036B23+           ATAAACACATGAACCCTAGGTAGTGTTCTTCCCCTTTTTGGTTTAATCACAAATCAAGCA
                      ____________________________________________________________
consensus             ATAAACACATGAACCCTAGGTAGTGTTCTTCCCCTTTTTGGTTTAATCACAAATCAAGCA
 
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JMSF036B23+           TCAAGATAGATAATACAACCCTAACTCAAGTCCATAGACTAACTACTCATGATTCAATAG
JMSF005O23+              AGATAGATAATACAACCCTAACTCAAGTCCATAGACTAACTACTCATGATTCAATAG
                      ____________________________________________________________
consensus             TCAAGATAGATAATACAACCCTAACTCAAGTCCATAGACTAACTACTCATGATTCAATAG
 
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JMSF036B23+           CATAAAGAACACAAAAACATAAATGTAAAGCATAAACATTGCAAGATAAAGAGATAAAAG
JMSF005O23+           CATAAAGAACACAAAAACATAAATGTAAAGCATAAACATTGCAAGATAAAGAGATAAAAG
                      ____________________________________________________________
consensus             CATAAAGAACACAAAAACATAAATGTAAAGCATAAACATTGCAAGATAAAGAGATAAAAG
 
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JMSF036B23+           GGATAAGAAAACTTCACTAAGAAATGGATGGTAAATCTTGGAATTCAAGTGTTGAATCCT
JMSF005O23+           GGATAAGAAAACTTCACTAAGAAATGGATGGTAAATCTTGGAATTCAAGTGTTGAATCCT
                      ____________________________________________________________
consensus             GGATAAGAAAACTTCACTAAGAAATGGATGGTAAATCTTGGAATTCAAGTGTTGAATCCT
 
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JMSF036B23+           TGATTACAAGCTTGAAAAATGTTAAAAAACCTAAATACTAGACTAATCTAAGCTAAGGAA
JMSF005O23+           TGATTACAAGCTTGAAAAATGTTAAAAAACCTAAATACTAGACTAAT----GCTAAGGAA
                      ____________________________________________________________
consensus             TGATTACAAGCTTGAAAAATGTTAAAAAACCTAAATACTAGACTAATCTAAGCTAAGGAA
 
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JMSF036B23+           ATGAAAGGAAGTGAAAGGGAATGAAAGGAATTGAAAGGAATGAAAGGAATGAAAGGAA  
JMSF005O23+           ATGAAAGGAAGTGAAAGGGAATGAAAGGAATTGAAAGGAATGAAAGGAATGAAAGGAATC
                      ____________________________________________________________
consensus             ATGAAAGGAAGTGAAAGGGAATGAAAGGAATTGAAAGGAATGAAAGGAATGAAAGGAATC