| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMCP016H03 | Sequence | 504 | 003541 (7) | ref|XP_009791393.1| | 9e-43 | PREDICTED: UPF0483 protein AGAP003155-like [Nicotiana sylvestris] | |||||
| JMFN018F22 | Sequence | 619 | 003541 (7) | ref|XP_004250132.1| | 7e-87 | PREDICTED: UPF0483 protein AGAP003155 [Solanum lycopersicum] | |||||
| JMSF005M10 | Sequence | 314 | 015662 | ref|XP_009613528.1| | 4e-05 | PREDICTED: protein disulfide-isomerase LQY1 [Nicotiana tomentosiformis] | 308 | 003541 (7) | ref|XP_009630893.1| | 69.7 | PREDICTED: uncharacterized protein LOC104120762 [Nicotiana tomentosiformis] |
| JMSF005O12 | Sequence | 267 | 003541 (7) | ref|XP_008444882.1| | 6e-21 | PREDICTED: dihydrofolate reductase-like [Cucumis melo] | 306 | 003541 (7) | ref|XP_009630893.1| | 79.7 | PREDICTED: uncharacterized protein LOC104120762 [Nicotiana tomentosiformis] |
| JMSF042G09 | Sequence | 826 | 003541 (7) | ref|XP_004250132.1| | 1e-109 | PREDICTED: UPF0483 protein AGAP003155 [Solanum lycopersicum] | 727 | 003541 (7) | ref|XP_009791392.1| | 2e-61 | PREDICTED: UPF0483 protein CG5412-like [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
rJMCP016H03+ GTAGA
____________________________________________________________
consensus GTAGA
. : . : . : . : . : . :
rJMCP016H03+ ATTCATGATATAATATGCATGTACCATTGTACCAATCACAAGATTTGTGGTCGAGTAACc
____________________________________________________________
consensus ATTCATGATATAATATGCATGTACCATTGTACCAATCACAAGATTTGTGGTCGAGTAACG
. : . : . : . : . : . :
rJMCP016H03+ AATTACTAGGATTACAAGTTAAACACAGTTTATTTAAgCaAATTAGTATGGTTACaAATT
rJMSF042G09- TTTATTTAACCTAATTAGTATGGTTACTAATT
JMSF042G09+ TTAACCTAATTAGTATGGTTACTAATT
____________________________________________________________
consensus AATTACTAGGATTACAAGTTAAACACAGTTTATTTAACCTAATTAGTATGGTTACTAATT
. : . : . : . : . : . :
rJMSF005O12- AAGGCTGAACCT
rJMSF005M10- CATGTTGCNTTAGATCATTACCATGCATATATAGTGCATNAAGGCTGAACNT
rJMCP016H03+ AGACACTGCATGTTGCTTTAGATCATTACCATGCATATATAGT-CATTAAGGCTGAACCT
rJMSF042G09- AGACACTGCATGTTGCTTTAGATCATTACCATGCATATATAGT-CNTTAAGGCTGAACCN
JMSF042G09+ AGACACTGCATGTTGCTTTAGATCATTACCATGCATATATAGT-CATTAAGGCTGAACCT
____________________________________________________________
consensus AGACACTGCATGTTGCTTTAGATCATTACCATGCATATATAGT-CATTAAGGCTGAACCT
. : . : . : . : . : . :
rJMSF005O12- AGGCTAGTTTCCTTCCTCCTGCACTGCCATTTTCTCAATTTTGTCGATGAACCCAAGCAT
rJMSF005M10- AGGCTAGGTTCCTNCCTCCTGCACTGCCATTTTCTCAGTTTTGTCGATGAGCCCAAGCAT
rJMCP016H03+ AGGCTAGTTTCCTTCCTCCTGCACTGCCATTTTgagtATTTTGTCGATGAACCCAAGCAT
rJMSF042G09- AGGCTAGTTTCCTTCCTCCNGCACTGCCATTTTCTCAATTTTGNCGATGAACCCANGCAT
JMSF042G09+ AGGCTAGTTTCCTTCCTCCTGCACTGCCATTTTCTCAATTTTGTCGATGAACCCAAGCAT
____________________________________________________________
consensus AGGCTAGTTTCCTTCCTCCTGCACTGCCATTTTCTCAATTTTGTCGATGAACCCAAGCAT
. : . : . : . : . : . :
rJMSF005O12- TGTTCCAACACTTTCCTCGTCTAATCTTGGTACTGTGTGTCCTTTGGGGTGATGAATAAG
rJMSF005M10- TGGTCCAACACTTTCCTCGTCGAATCTTGGGACTGTGGGTCCTTTGGGGTGATGAATAAG
rJMCP016H03+ TGTTCCAACACTTTCCagcTCTAATCTTGGTACTGTGTGTCCTTTGGGGTGATGAATAAG
rJMSF042G09- TGTTCCAACACTTTCCTCGNCTAATCTTGGNACTGTGTGNCCTTTGGGGTGATGAANAAG
JMSF042G09+ TGTTCCAACACTTTCCTCGTCTAATCTTGGTACTGTGTGTCCTTTGGGGTGATGAATAAG
____________________________________________________________
consensus TGTTCCAACACTTTCCTCGTCTAATCTTGGTACTGTGTGTCCTTTGGGGTGATGAATAAG
. : . : . : . : . : . :
rJMSF005O12- ATGTGGATCCACAAAGCACTCCAGCAGAAGTTTCCCTTCTTCTTTCTGGAAATCTGTCTC
rJMSF005M10- ATGTGGATCNACAAAGCACTCCAGCAGAAGTTTCCCTTCTTCTTTCTGGAAATCGGTCTC
rJMCP016H03+ ATGTGGATCCACAAAGCtgTCCAGCAGAAGTTTCCCTagTTCTTTCTGGAAAaCTGTCTC
rJMSF042G09- ATGTGGATCCACAAAGCACTCCAGCAGAANTTTCCCTTCTTCTTTCTGGAAATCTGTCTC
JMSF042G09+ ATGTGGATCCACAAAGCACTCCAGCAGAAGTTTCCCTTCTTCTTTCTGGAAATCTGTCTC
JMFN018F22+ TCTTCTTTCTGGAAATCTGTCTC
____________________________________________________________
consensus ATGTGGATCCACAAAGCACTCCAGCAGAAGTTTCCCTTCTTCTTTCTGGAAATCTGTCTC
. : . : . : . : . : . :
rJMSF005O12- ACC
rJMSF005M10- ACC
rJMCP016H03+ ACCCAAGAAGTGgttGcAAGccgttTcAAGTGGATGTGAGAATGgtaTGGgtcgaAGTTT
rJMSF042G09- ACCCANGAAGNGCAAGGAAGGGCAATGAAGTGGATGTGAGAANGCATTGGCAGCTAGTTT
JMSF042G09+ ACCCAAGAAGTGCAAGGAAGGGCAATGAAGTGGATGTGAGAATGCATTGGCAGCTAGTTT
JMFN018F22+ ACCCAAGAAGTGCAAGGAAGGGCAATGAAGTGGATGTGAGAATGCATTGGTAGCTAGTTT
____________________________________________________________
consensus ACCCAAGAAGTGCAAGGAAGGGCAATGAAGTGGATGTGAGAATGCATTGGCAGCTAGTTT
. : . : . : . : . : . :
rJMCP016H03+ TGGAACACCtAATTTGGGGCCTCgAAATTTAGCCCCtGATATTATTATCAgtttCTTTAT
rJMSF042G09- TGGAACACCNAATTTGGGGCCTCCAAATTTAGCCCCANATATTATTATCACAAACTTTAT
JMSF042G09+ TGGAACACCAAATTTGGGGCCTCCAAATTTAGCCCCAGATATTATTATCACAAACTTTAT
JMFN018F22+ TGGAACACCAAATTTGGGGCCTCCAAATTTAGCCCCAGATATTATTATCACAAACTTTAT
____________________________________________________________
consensus TGGAACACCAAATTTGGGGCCTCCAAATTTAGCCCCAGATATTATTATCACAAACTTTAT
. : . : . : . : . : . :
rJMCP016H03+ TTTTGCTGCTTTGC
rJMSF042G09- TTTTGCTGCTTTGCTCNAAGCTGCACCTTCCCTCTGCNTTCCTGGCATTGCTGCTGCTNA
JMSF042G09+ TTTTGCTGCTTTGCTCAAAGCTGCACCTTCCCTCTGCATTCCTGGCATTGCTGCTGCTAA
JMFN018F22+ TTTTGCTGCTTTGCTCAAAGCTGCACCTTCCCTCTGCATTCCTGGCATTGCTGCTGCTAA
____________________________________________________________
consensus TTTTGCTGCTTTGCTCAAAGCTGCACCTTCCCTCTGCATTCCTGGCATTGCTGCTGCTAA
. : . : . : . : . : . :
rJMSF042G09- AACTGCTCCCTGGGAAAAACCAAGAACTCCATCAAAGGGCCCATTTTTGACCATATAATC
JMSF042G09+ AACTGCTCCCTGGGAAAAACCAAGAACTCCATCAAAGGGCCCATTTTTGACCATATAATC
JMFN018F22+ AACTGCTCCCTGGGAAAAACCAAGAACTCCATCAAAGGGCCCATTTTTGACCATATAATC
____________________________________________________________
consensus AACTGCTCCCTGGGAAAAACCAAGAACTCCATCAAAGGGCCCATTTTTGACCATATAATC
. : . : . : . : . : . :
rJMSF042G09- CTCAATGTATTCCAGGCACTCTTCAAATTTGTAATATTCTTTAAATTCCTTATCAGCTTG
JMSF042G09+ CTCAATGTATTCCAGGCACTCTTCAAATTTGTAATATTCTTTAAATTCCTTATCAGCTTG
JMFN018F22+ CTCAATGTATTCCAGGCACTCTTCAAATTTGTAATATTCTTTAAATTCCTTATCAGCTTG
____________________________________________________________
consensus CTCAATGTATTCCAGGCACTCTTCAAATTTGTAATATTCTTTAAATTCCTTATCAGCTTG
. : . : . : . : . : . :
rJMSF042G09- GAACCATTCGAAGTAAGGAGGGNCAAAGATGCCTTCGACGGTGGACTTGCCCTGANCGGG
JMSF042G09+ GAACCATTCGAAGTAAGGAGGGTCAAAGATGCCTTCGACGGTGGACTTGCCCTGAGCGGG
JMFN018F22+ GAACCATTCGAAGTAAGGAGGGTCAAAGATGCCTTCGACGGTGGACTTGCCCTGAGCGGG
JMSF005O12+ TTCGACGGTGGACTTGCCCTGAGCGGG
____________________________________________________________
consensus GAACCATTCGAAGTAAGGAGGGTCAAAGATGCCTTCGACGGTGGACTTGCCCTGAGCGGG
. : . : . : . : . : . :
rJMSF042G09- GAATGNTGCGTCGAGAAANTGGAGATCTA
JMSF042G09+ GAATGGTGCGTCGAGAAAGTGGAGATCTAGGCGGTCGAGGACGGATTCCGGCCACCGGAG
JMFN018F22+ GAATGGTGCGTCGAGAAAGTGGAGATCTAGGCGGTCGAGGACGGATTCCGGCCACCGGAG
JMSF005O12+ GAATGGTGCGTCGAGAAAGTGGAGATCTAGGCGGTCGAGGACGGATTCCGGCCACCGGAG
____________________________________________________________
consensus GAATGGTGCGTCGAGAAAGTGGAGATCTAGGCGGTCGAGGACGGATTCCGGCCACCGGAG
. : . : . : . : . : . :
JMSF042G09+ AACCAATTTCTTGAGGATTTCGGCGCTTGTTCGGAAGCCGTGGAGGCAAACAACTCTGAG
JMFN018F22+ AACCAATTTCTTGAGGATTTCGGCGCTTGTTCGGAAGCCGTGGAGGCAAACAACTCTGAG
JMSF005O12+ AACCAATTTCTTGAGGATTTCGGCGCTTGTTCGGAAGCCGTGGAGGCAAACAACTCTGAG
____________________________________________________________
consensus AACCAATTTCTTGAGGATTTCGGCGCTTGTTCGGAAGCCGTGGAGGCAAACAACTCTGAG
. : . : . : . : . : . :
JMSF042G09+ TTTCTTGTGGATTATTTGGTTGTTTTCCATTTTTAGATGAAGGAAGGAGCTGAGATATTC
JMFN018F22+ TTTCTTGTGGATTATTTGGTTGTTTTCCATTTTTAGATGAAGGAAGGAGCTGAGATATTC
JMSF005O12+ TTTCTTGTGGATTATTTGGTTGTTTCCCATTTTTAGATGAAGGAAGGAGCTGAGATATTC
____________________________________________________________
consensus TTTCTTGTGGATTATTTGGTTGTTTTCCATTTTTAGATGAAGGAAGGAGCTGAGATATTC
. : . : . : . : . : . :
JMSF042G09+ TCTCAATTCTTTGTTTCCC
JMFN018F22+ TCTCAATTCTTTGTTTCCCAAAAAATAATTAGACGCAA
JMSF005O12+ TCTCAATTCTTTGTTTCCCAAAAAATAATTAGACGCAACGTAGTTACAATGAATCTTCCC
____________________________________________________________
consensus TCTCAATTCTTTGTTTCCCAAAAAATAATTAGACGCAACGTAGTTACAATGAATCTTCCC