Contig 003536:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF005G11Sequence243003536 (3)ref|XP_009788569.1|5e-05PREDICTED: DNA ligase 1-like [Nicotiana sylvestris]510012513 (2)ref|XP_009763885.1|2e-47PREDICTED: auxin-induced protein 6B-like [Nicotiana sylvestris]
JMSF021L17Sequence687003536 (3)ref|XP_009788569.1|3e-59PREDICTED: DNA ligase 1-like [Nicotiana sylvestris]730012736 (3)ref|XP_010111844.1|7e-109DNA ligase 1 [Morus notabilis] gb|EXC31809.1| DNA ligase 1 [Morus notabilis]
JMSF044E07Sequence798003536 (3)ref|XP_009788569.1|9e-98PREDICTED: DNA ligase 1-like [Nicotiana sylvestris]800012736 (3)emb|CDP14619.1|7e-116unnamed protein product, partial [Coffea canephora]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044E07+                                          TACGCATCAAAGACTGAGATGATCGACTT
                      ____________________________________________________________
consensus                                            TACGCATCAAAGACTGAGATGATCGACTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044E07+           GCTTTTGCAACAAGGCCTAAATCACCAAGATCCTTATATTGCTTCTTAATGTGTGCTTCT
                      ____________________________________________________________
consensus             GCTTTTGCAACAAGGCCTAAATCACCAAGATCCTTATATTGCTTCTTAATGTGTGCTTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044E07+           TTAGCCCCACAAGCCTCGGCAAGGGCCTTAATAATTGATGCATCTCCAATTCCAAGTTCC
                      ____________________________________________________________
consensus             TTAGCCCCACAAGCCTCGGCAAGGGCCTTAATAATTGATGCATCTCCAATTCCAAGTTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044E07+           AATCCCTCATGGGCAGGTGCAATTTTGTTTGCAGAAAGGTACACCGCCGGCAACAAGTCG
JMSF021L17+                                          CAGAAAGGTACACCGCCGGCAACAAGTCG
                      ____________________________________________________________
consensus             AATCCCTCATGGGCAGGTGCAATTTTGTTTGCAGAAAGGTACACCGCCGGCAACAAGTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044E07+           TCAGGGGTGGTGTGAATCACGGTCCTTAACATATTGGCCACAATGTCAGTGATGGCAATC
JMSF021L17+           TCAGGGGTGGTGTGAATCACGGTCCTTAACATATTGGCCACAATGTCAGTGATGGCAATC
                      ____________________________________________________________
consensus             TCAGGGGTGGTGTGAATCACGGTCCTTAACATATTGGCCACAATGTCAGTGATGGCAATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044E07+           CGCCCAGACTCCTCTTCAATTGCACCAAACGCCTTCGCCACAAACATGAACGGCACTCTC
JMSF021L17+           CGCCCAGACTCCTCTTCAATTGCACCAAACGCCTTCGCCACAAACATGAACGGCACTCTC
                      ____________________________________________________________
consensus             CGCCCAGACTCCTCTTCAATTGCACCAAACGCCTTCGCCACAAACATGAACGGCACTCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044E07+           TCCCCATCTCCCCAATACGCAGCCTTTTTCGGATCAAAATTCGCCCCCTTCTTCTTCAGC
JMSF021L17+           TCCCCATCTCCCCAATACGCAGCCTTTTTCGGATCAAAATTCGCCCCCTTCTTCTTCAGC
                      ____________________________________________________________
consensus             TCCCCATCTCCCCAATACGCAGCCTTTTTCGGATCAAAATTCGCCCCCTTCTTCTTCAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044E07+           TCCGCAACGCTCTCATCAGGACTTATCAACTTCGGTTTCTTAGCTGCCACTTCCTCCCCG
JMSF021L17+           TCCGCAACGCTCTCATCAGGACTTATCAACTTCGGTTTCTTAGCTGCCACTTCCTCCCCG
                      ____________________________________________________________
consensus             TCCGCAACGCTCTCATCAGGACTTATCAACTTCGGTTTCTTAGCTGCCACTTCCTCCCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044E07+           CCATTCCTCGCCCCATCTACATTTTCAATCGCCTTCACATTGGAATTGGCATTTTCCGCA
JMSF021L17+           CCATTCCTCGCCCCATCTACATTTTCAATCGCCTTCACATTGGAATTGGCATTTTCCGCA
                      ____________________________________________________________
consensus             CCATTCCTCGCCCCATCTACATTTTCAATCGCCTTCACATTGGAATTGGCATTTTCCGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044E07+           ATAGCTGCTGAAACAGAGCTAGACTTCTGCTCCGGAGTGTCTTTTTCGGCGCTCTTGCGT
JMSF021L17+           ATAGCTGCTGAAACAGAGCTAGACTTCTGCTCCGGAGTGTCTTTTTCGGCGCTCTTGCGT
                      ____________________________________________________________
consensus             ATAGCTGCTGAAACAGAGCTAGACTTCTGCTCCGGAGTGTCTTTTTCGGCGCTCTTGCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044E07+           TTCTTGGGCGAAGGCTCTTGGGCCGGAGGTGTCTGGGTCTTGGATTTCTTCTTGGAATTG
JMSF021L17+           TTCTTGGGCGAAGGCTCTTGGGCCGGAGGTGTCTGGGTCTTGGATTTCTTCTTGGAATTG
JMSF005G11+                                                                    TTG
                      ____________________________________________________________
consensus             TTCTTGGGCGAAGGCTCTTGGGCCGGAGGTGTCTGGGTCTTGGATTTCTTCTTGGAATTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044E07+           GCCATGAGGACGTCGAACGCTGAGCGAGGAGTGGACATTAGTCTGAGATTAGGGTTTGCG
JMSF021L17+           GCCATGAGGACGTCGAACGCTGAGCGAGGAGTGGACATTGGTCTGAGATTAGGGTTTGCG
JMSF005G11+           GCCATGAGGACGTCGAACGCTGAGCGAGGAGTGGACATTGGTCTGAGATTAGGGTTTGCG
                      ____________________________________________________________
consensus             GCCATGAGGACGTCGAACGCTGAGCGAGGAGTGGACATTGGTCTGAGATTAGGGTTTGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044E07+           GAGAAGATTAGGGGTTTAGGAAAGAAGGGTTTAGCGCAGAGGAGAAATGGAATTGAATTG
JMSF021L17+           GAGAAGATTAGGGGTTTAGGAAAGAAGGGTTTAGCGCAGAGGAGAAATGGAATTGAATTG
JMSF005G11+           GAGAAGATTAGGGGTTTAGGAAAGAAGGGTTTAGCGCAGAGGAGAAATGGAATTGAATTG
                      ____________________________________________________________
consensus             GAGAAGATTAGGGGTTTAGGAAAGAAGGGTTTAGCGCAGAGGAGAAATGGAATTGAATTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044E07+           GGTGTAAGGTGAGAATGGAGGCGAGTGAAGAAGATGAAGGTGTTGGGC            
JMSF021L17+           GGTGTAAGGTGAGAATGGAGGCGAGTGAAGAAGATGAAGGTGTTGGGCAAGTAGCAGGAG
JMSF005G11+           GGTGTAAGGTGAGAATGGAGGCGAGTGAAGAAGATGAAGGTGTTGGGCAAGTAGCAGGAG
                      ____________________________________________________________
consensus             GGTGTAAGGTGAGAATGGAGGCGAGTGAAGAAGATGAAGGTGTTGGGCAAGTAGCAGGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF021L17+           CAAGAACGGAGTGATAACATCAACGGCGGGGGTGCGATTGCGGGGAGGGAATGACAC   
JMSF005G11+           CAAGAACGGAGTGATAACATCAACGGCGGGGGTGCGATTGCGGGGAGGGAATGACACACT
                      ____________________________________________________________
consensus             CAAGAACGGAGTGATAACATCAACGGCGGGGGTGCGATTGCGGGGAGGGAATGACACACT