Contig 003529:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004G01Sequence361003529 (2)ref|XP_009781421.1|4e-60PREDICTED: ras-related protein RHN1 [Nicotiana sylvestris]378003529 (2)ref|XP_009781421.1|2e-25PREDICTED: ras-related protein RHN1 [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF004G01- CAAATCATGTACAACTTCTGGTAAGATCCACCAGAAAATAAATTT
                      ____________________________________________________________
consensus CAAATCATGTACAACTTCTGGTAAGATCCACCAGAAAATAAATTT
 
. : . : . : . : . : . :
rJMSF004G01- TGCCAACAATTTAACATATACACAATACACTCTTTAAATTCTAAAATATAAAGGGCGGGC
                      ____________________________________________________________
consensus TGCCAACAATTTAACATATACACAATACACTCTTTAAATTCTAAAATATAAAGGGCGGGC
 
. : . : . : . : . : . :
rJMSF004G01- ATTGGGTAATCCGTTGCTGAAAGATGTACACAACTCCATGTTTGGGTTCTTTCTTGTCCT
JMSF004G01+ T
                      ____________________________________________________________
consensus ATTGGGTAATCCGTTGCTGAAAGATGTACACAACTCCATGTTTGGGTTCTTTCTTGTCCT
 
. : . : . : . : . : . :
rJMSF004G01- TAATTGCTTATACAAACACGACATCCCTCCTTAAGTACAGCATGATGCTCTGGTTCCTCT
JMSF004G01+ TAATTGCTTATACAAACACGACATCCCTCCTTAAGTACAGCATGATGCTCTGGTTCCTCT
                      ____________________________________________________________
consensus TAATTGCTTATACAAACACGACATCCCTCCTTAAGTACAGCATGATGCTCTGGTTCCTCT
 
. : . : . : . : . : . :
rJMSF004G01- GGCTTGTCCGTCAGTAAGTGTCACCCCTGCTGGATTTTGAACAGGTTGAGCTCTGGGCAA
JMSF004G01+ GGCTTGTCCGTCAGTAAGTGTCACCCCTGCTGGATTTTGAACAGGTTGAGCTCTGGGCAA
                      ____________________________________________________________
consensus GGCTTGTCCGTCAGTAAGTGTCACCCCTGCTGGATTTTGAACAGGTTGAGCTCTGGGCAA
 
. : . : . : . : . : . :
rJMSF004G01- CCTCTTAGCTATTTCATAGAAAATATCATTAACGTTAAGAGCTGTTTTTGCAGAAGTCTC
JMSF004G01+ CCTCTTAGCTATTTCATAGAAAATATCATTAACGTTAAGAGCTGTTTTTGCAGAAGTCTC
                      ____________________________________________________________
consensus CCTCTTAGCTATTTCATAGAAAATATCATTAACGTTAAGAGCTGTTTTTGCAGAAGTCTC
 
. : . : . : . : . : . :
rJMSF004G01- CATGAAGAAAAGAGCATTTTCCTCGGCATATAA
JMSF004G01+ CATGAAGAAAAGAGCATTTTCCTCGGCATATAAGCGTGCCTCTTCAGCAGTCACCTTCCT
                      ____________________________________________________________
consensus CATGAAGAAAAGAGCATTTTCCTCGGCATATAAGCGTGCCTCTTCAGCAGTCACCTTCCT
 
. : . : . : . : . : . :
JMSF004G01+ TTTGTCTTCCAAATCAGCTTTGTTCCCAGCAAGTGCAACAACCATGTTTGGATTACCTTG
                      ____________________________________________________________
consensus TTTGTCTTCCAAATCAGCTTTGTTCCCAGCAAGTGCAACAACCATGTTTGGATTACCTTG
 
. : . : . : . : . : . :
JMSF004G01+ TTTCTGCAATTCTTGGACCCACTTCTTTGATCGTTCAAATGAATCCGTATTAGTAAAATC
                      ____________________________________________________________
consensus TTTCTGCAATTCTTGGACCCACTTCTTTGATCGTTCAAATGAATCCGTATTAGTAAAATC