Contig 003527:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004D14Sequence347003527 (3)ref|XP_009616556.1|1e-29PREDICTED: fasciclin-like arabinogalactan protein 2 [Nicotiana tomentosiformis]
JMSF009P13Sequence214003527 (3)ref|XP_004291803.1|2e-05PREDICTED: fasciclin-like arabinogalactan protein 1 [Fragaria vesca subsp. vesc137019236
JMSF026P08Sequence666003527 (3)ref|XP_006357643.1|3e-82PREDICTED: fasciclin-like arabinogalactan protein 2-like [Solanum tuberosum]529022561ref|XP_009606546.1|4e-40PREDICTED: fasciclin-like arabinogalactan protein 2 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMSF026P08+                                                                 GGCGAA
                      ____________________________________________________________
consensus                                                                   GGCGAA
 
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JMSF026P08+           CGCTTTGCAGCCTTGTTTAGCCATTAACGTGGTAATGTTTACGTCGGTGGGGCCGGACGC
                      ____________________________________________________________
consensus             CGCTTTGCAGCCTTGTTTAGCCATTAACGTGGTAATGTTTACGTCGGTGGGGCCGGACGC
 
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JMSF026P08+           CGGAGCCTCGGCGTAGGAGGAGGAGAGGTGGTGGCTGATTTGAATGACGGAGATTTTGTA
                      ____________________________________________________________
consensus             CGGAGCCTCGGCGTAGGAGGAGGAGAGGTGGTGGCTGATTTGAATGACGGAGATTTTGTA
 
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JMSF026P08+           CGGCTTTTCCAGAACGGATTTCACGAAAGTTGAGTCGAAGCGGCCGGTGTTGTCTTCCGG
                      ____________________________________________________________
consensus             CGGCTTTTCCAGAACGGATTTCACGAAAGTTGAGTCGAAGCGGCCGGTGTTGTCTTCCGG
 
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JMSF026P08+           GGCGAAGCCGACCTTGCCGCCCTTGAGGGCGGTCATGTTGACGTAGCCGGAGGTTCCGGG
                      ____________________________________________________________
consensus             GGCGAAGCCGACCTTGCCGCCCTTGAGGGCGGTCATGTTGACGTAGCCGGAGGTTCCGGG
 
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JMSF026P08+           AGCGTCGCCGGTGGCTTGGAACATGGTGGCGGTGAGGGTGGTGCCTTTGTTAAGGTGGTG
                      ____________________________________________________________
consensus             AGCGTCGCCGGTGGCTTGGAACATGGTGGCGGTGAGGGTGGTGCCTTTGTTAAGGTGGTG
 
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JMSF026P08+           GAGCTTCTTGGTGCCGAAGTAATCGGCGAGGACGTGGTAGGAGAGGATGTTCTTGATGGT
JMSF004D14+                        CCGAAGTAATCGGCGAGGACGTGGTAGGAGAGGATGTTCTTGATGGT
                      ____________________________________________________________
consensus             GAGCTTCTTGGTGCCGAAGTAATCGGCGAGGACGTGGTAGGAGAGGATGTTCTTGATGGT
 
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JMSF026P08+           GTAGAGGGAGTAGTGCTTGTCGAGGATGTCGTTCATGGCGGCGTTGTTCAGCACCAGCAC
JMSF004D14+           GTAGAGGGAGTAGTGCTTGTCGAGGATGTCGTTCATGGCGGCGTTGTTCAGCACCAGCAC
                      ____________________________________________________________
consensus             GTAGAGGGAGTAGTGCTTGTCGAGGATGTCGTTCATGGCGGCGTTGTTCAGCACCAGCAC
 
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JMSF026P08+           CGTGATGGTCTGCCGGCGGTTGATCTCCGCCGCCAGATGCGTCAGAGTCAGGTAGCGGTT
JMSF009P13+                                     CCGCCGCCAGATGCGTCAGAGTCAGGTAGCGGTT
JMSF004D14+           CGTGATGGTCTGCCGGCGGTTGATCTCCGCCGCCAGATGCGTCAGAGTCAGGTAGCGGTT
                      ____________________________________________________________
consensus             CGTGATGGTCTGCCGGCGGTTGATCTCCGCCGCCAGATGCGTCAGAGTCAGGTAGCGGTT
 
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JMSF026P08+           GAAGGTGGAGAAGTCGTCGTGTTTGGCCAGAATTTGGGTGATATTGAAGCCATACGCCGT
JMSF009P13+           GAAGGTGGAGAAGTCGTCGTGTTTGGCCAGAATTTGGGTGATATTGAAGCCATACGCCGT
JMSF004D14+           GAAGGTGGAGAAGTCGTCGTGTTTGGCCAGAATTTGGGTGATATTGAAGCCATACGCCGT
                      ____________________________________________________________
consensus             GAAGGTGGAGAAGTCGTCGTGTTTGGCCAGAATTTGGGTGATATTGAAGCCATACGCCGT
 
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JMSF026P08+           GGAGAAGAGTAAGATGACGTACACATATAGTGATAAAACCACCGCCGCCGTCGCCGAAAA
JMSF009P13+           GGAGAAGAGTAAGATGACGTACACATATAGTGATAAAACCACCGCCGCCGTCGCCGAAAA
JMSF004D14+           GGAGAAGAGTAAGATGACGTACACATATAGTGATAAAACCACCGCCGCCGTCGCCGAAAA
                      ____________________________________________________________
consensus             GGAGAAGAGTAAGATGACGTACACATATAGTGATAAAACCACCGCCGCCGTCGCCGAAAA
 
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JMSF026P08+           CTTCATTTCTCCGGCGACAAAGAGAACAAAGGTTTCCTTTTCTCTTGGAGTTTATTGTC 
JMSF009P13+           CTTCATTTCTCCGGCGACAAAGAGAACAAAGGTTTCCTTTTCTCTTGGAGTTTATTGTC 
JMSF004D14+           CTTCATTTCTCCGGCGACAAAGAGAACAAAGGTTTCCTTTTCTCTTGGAGTTTATTGTCC
                      ____________________________________________________________
consensus             CTTCATTTCTCCGGCGACAAAGAGAACAAAGGTTTCCTTTTCTCTTGGAGTTTATTGTCC