clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF019N12 | Sequence | 547 | 003523 (4) | ref|XP_006353009.1| | 7e-69 | PREDICTED: KRR1 small subunit processome component homolog [Solanum tuberosum] | 720 | 016958 | ref|XP_011089129.1| | 9e-50 | PREDICTED: KRR1 small subunit processome component homolog [Sesamum indicum] |
JMSF003H10 | Sequence | 451 | 003523 (4) | ref|XP_006353009.1| | 9e-31 | PREDICTED: KRR1 small subunit processome component homolog [Solanum tuberosum] | 335 | 022435 | |||
JMSF024P24 | Sequence | 637 | 003523 (4) | ref|XP_006353009.1| | 2e-80 | PREDICTED: KRR1 small subunit processome component homolog [Solanum tuberosum] | 521 | 005714 (2) | ref|XP_007015208.1| | 6e-06 | RNA-binding KH domain-containing protein [Theobroma cacao] gb|EOY32827.1| RNA-bi |
JMSF029F21 | Sequence | 619 | 003523 (4) | ref|XP_006353009.1| | 2e-68 | PREDICTED: KRR1 small subunit processome component homolog [Solanum tuberosum] | 174 | 005714 (2) |
This contig is upended
. : . : . : . : . : . :
JMSF024P24+ AGTGGAAGAATTGGCAC
____________________________________________________________
consensus AGTGGAAGAATTGGCAC
. : . : . : . : . : . :
JMSF024P24+ CCAAAAGAAGCTGCCTCCGTTTAACAAACCGCTCCTTGCTGTGGATCAATTTACCAATCT
JMFF019N12+ GGATCAATTTACCAATCT
JMSF029F21+ GGATCAATTTACCAATCT
____________________________________________________________
consensus CCAAAAGAAGCTGCCTCCGTTTAACAAACCGCTCCTTGCTGTGGATCAATTTACCAATCT
. : . : . : . : . : . :
JMSF024P24+ GGATGATGTCACATTGCATCTCATCATTCAGAATTTTAATTGCCTGGGGTGCAGGAACAC
JMFF019N12+ GGATGATGTCACATTGCATCTCATCATTCAGAATTTTAATTGCCTGGGGTGCAGGAACAC
JMSF029F21+ GGATGATGTCACATTGCATCTCATCATTCAGAATTTTAATTGCCTGGGGTGCAGGAACAC
____________________________________________________________
consensus GGATGATGTCACATTGCATCTCATCATTCAGAATTTTAATTGCCTGGGGTGCAGGAACAC
. : . : . : . : . : . :
JMSF024P24+ TTCTTGACAGAAGTTTAATGAGATCTCTAGCTTTAACTATAATATAGGGATCCCTTGTTT
JMFF019N12+ TTCTTGACAGAAGTTTAATGAGATCTCTAGCTTTAACTATAATATAGGGATCCCTTGTTT
JMSF029F21+ TTCTTGACAGAAGTTTAATGAGATCTCTAGCTTTAACTATAATATAGGGATCCCTTGTTT
____________________________________________________________
consensus TTCTTGACAGAAGTTTAATGAGATCTCTAGCTTTAACTATAATATAGGGATCCCTTGTTT
. : . : . : . : . : . :
JMSF024P24+ TCCTAGTTGTCGAAACTGTCATGGATCCTCCAACCAAATTCAGCTCGCATGCGATTCCAT
JMFF019N12+ TCCTAGTTGTCGAAACTGTCATGGATCCTCCAACCAAATTCAGCTCGCATGCGATTCCAT
JMSF029F21+ TCCTAGTTGTCGAAACTGTCATGGATCCTCCAACCAAATTCAGCTCGCATGCGATTCCAT
JMSF003H10+ CCAACCAAATTCAGCTCGCATGCGATTCCAT
____________________________________________________________
consensus TCCTAGTTGTCGAAACTGTCATGGATCCTCCAACCAAATTCAGCTCGCATGCGATTCCAT
. : . : . : . : . : . :
JMSF024P24+ GCTCTTTGAGTGCACCTTTGACATTAGGCCAGCATTCTTGCAAGTACTTCCCTCTGTAAT
JMFF019N12+ GCTCTTTGAGTGCACCTTTGACATTAGGCCAGCATTCTTGCAAGTACTTCCCTCTGTAAT
JMSF029F21+ GCTCTTTGAGTGCACCTTTGACATTAGGCCAGCATTCTTGCAAGTACTTCCCTCTGTAAT
JMSF003H10+ GCTCTTTGAGTGCACCTTTGACATTAGGCCAGCATTCTTGCAAGTACTTCCCTCTGTAAT
____________________________________________________________
consensus GCTCTTTGAGTGCACCTTTGACATTAGGCCAGCATTCTTGCAAGTACTTCCCTCTGTAAT
. : . : . : . : . : . :
JMSF024P24+ TAGGGAAGAGAGTGGAGAAACAGCTTACTTCAAGCATGCCGCTTTCGTTCCAGGAAGGAT
JMFF019N12+ TAGGGAAGAGAGTGGAGAAACAGCTTACTTCAAGCATGCCGCTTTCGTTCCAGGAAGGAT
JMSF029F21+ TAGGGAAGAGAGTGGAGAAACAGCTTACTTCAAGCATGCCGCTTTCGTTCCAGGAAGGAT
JMSF003H10+ TAGGGAAGAGAGTGGAGAAACAGCTTACTTCAAGCATGCCGCTTTCGTTCCAGGAAGGAT
____________________________________________________________
consensus TAGGGAAGAGAGTGGAGAAACAGCTTACTTCAAGCATGCCGCTTTCGTTCCAGGAAGGAT
. : . : . : . : . : . :
JMSF024P24+ CGAACTTCTCAATCTTCCAGTGGTCAATGCTCGGATCATCCCACGGCTTTGGTTTGTCGT
JMFF019N12+ CGAACTTCTCAATCTTCCAGTGGTCAATGCTCGGATCATCCCACGGCTTTGGTTTGTCGT
JMSF029F21+ CGAACTTCTCAATCTTCCAGTGGTCAATGCTCGGATCATCCCACGGCTTTGGTTTGTCGT
JMSF003H10+ CGAACTTCTCAATCTTCCAGTGGTCAATGCTCGGATCATCCCACGGCTTTGGTTTGTCGT
____________________________________________________________
consensus CGAACTTCTCAATCTTCCAGTGGTCAATGCTCGGATCATCCCACGGCTTTGGTTTGTCGT
. : . : . : . : . : . :
JMSF024P24+ GCTTCCCCTTGTGTTTCTGCTTTCGATTCTTCAACTCTTCCGCCTCCTCCTCCTCCTCCC
JMFF019N12+ GCTTCCCCTTGTGTTTCTGCTTTCGATTCTTCAACTCTTCCGCCTCCTCCTCCTCCTCCC
JMSF029F21+ GCTTCCCCTTGTGTTTCTGCTTTCGATTCTTCAACTCTTCCGCCTCCTCCTCCTCCTCCC
JMSF003H10+ GCTTCCCCTTGTGTTTCTGCTTTCGATTCTTCAACTCTTCCGCCTCCTCCTCCTCCTCCC
____________________________________________________________
consensus GCTTCCCCTTGTGTTTCTGCTTTCGATTCTTCAACTCTTCCGCCTCCTCCTCCTCCTCCC
. : . : . : . : . : . :
JMSF024P24+ CGCTATTGACGTTGTTCTCATTCTCCGACATCCTTACAGAGCTCCAGAAATTAGCTGTGA
JMFF019N12+ CGCTATTGACGTTGTTCTCATTCTCCGACATCCTTACAGAGCTCCAGAAATTAGCTGTGA
JMSF029F21+ CGCTATTGACGTTGTTCTCATTCTCCGACATCCTTACAGAGCTCCAGAAATTAGCTGTGA
JMSF003H10+ CGCTATTGACGTTGTTCTCATTCTCCGACATCCTTACAGAGCTCCAGAAATTAGCTGTGA
____________________________________________________________
consensus CGCTATTGACGTTGTTCTCATTCTCCGACATCCTTACAGAGCTCCAGAAATTAGCTGTGA
. : . : . : . : . : . :
JMSF024P24+ TTTCCGAATTTTGGATTATACTTCACCGAGCGGAATTAGGGTCCGAGAGAGACTGAAATT
JMFF019N12+ TTTCCGAATTTTGGATTATACTTCACCGAGCGGAATTAGGGTCCGAGAG
JMSF029F21+ TTTCCGAATTTTGGATTATACTTCACCGAGCGGAATTAGGGTCCGAGAGAGACTGAAATT
JMSF003H10+ TTTCCGAATTTTGGATTATACTTCACCGAGCGGAATTAGGGTCCGAGAGAGACTGAAATT
____________________________________________________________
consensus TTTCCGAATTTTGGATTATACTTCACCGAGCGGAATTAGGGTCCGAGAGAGACTGAAATT
. : . : . : . : . : . :
JMSF024P24+ CGGCTCCGACAGAGACTC
JMSF029F21+ CGGCTCCGACAGAGACTCTAATTAGGTTTAGCTGGGGTTCTGAAACAATGGCCGGCGGTC
JMSF003H10+ CGGCTCCGACAGAGACTCTAATTAGGTTTAGCTGGGGTTCTGAAACAATGGCCGGCGGTC
____________________________________________________________
consensus CGGCTCCGACAGAGACTCTAATTAGGTTTAGCTGGGGTTCTGAAACAATGGCCGGCGGTC