Contig 003523:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF019N12Sequence547003523 (4)ref|XP_006353009.1|7e-69PREDICTED: KRR1 small subunit processome component homolog [Solanum tuberosum]720016958ref|XP_011089129.1|9e-50PREDICTED: KRR1 small subunit processome component homolog [Sesamum indicum]
JMSF003H10Sequence451003523 (4)ref|XP_006353009.1|9e-31PREDICTED: KRR1 small subunit processome component homolog [Solanum tuberosum]335022435
JMSF024P24Sequence637003523 (4)ref|XP_006353009.1|2e-80PREDICTED: KRR1 small subunit processome component homolog [Solanum tuberosum]521005714 (2)ref|XP_007015208.1|6e-06RNA-binding KH domain-containing protein [Theobroma cacao] gb|EOY32827.1| RNA-bi
JMSF029F21Sequence619003523 (4)ref|XP_006353009.1|2e-68PREDICTED: KRR1 small subunit processome component homolog [Solanum tuberosum]174005714 (2)

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF024P24+ AGTGGAAGAATTGGCAC
                      ____________________________________________________________
consensus AGTGGAAGAATTGGCAC
 
. : . : . : . : . : . :
JMSF024P24+ CCAAAAGAAGCTGCCTCCGTTTAACAAACCGCTCCTTGCTGTGGATCAATTTACCAATCT
JMFF019N12+ GGATCAATTTACCAATCT
JMSF029F21+ GGATCAATTTACCAATCT
                      ____________________________________________________________
consensus CCAAAAGAAGCTGCCTCCGTTTAACAAACCGCTCCTTGCTGTGGATCAATTTACCAATCT
 
. : . : . : . : . : . :
JMSF024P24+ GGATGATGTCACATTGCATCTCATCATTCAGAATTTTAATTGCCTGGGGTGCAGGAACAC
JMFF019N12+ GGATGATGTCACATTGCATCTCATCATTCAGAATTTTAATTGCCTGGGGTGCAGGAACAC
JMSF029F21+ GGATGATGTCACATTGCATCTCATCATTCAGAATTTTAATTGCCTGGGGTGCAGGAACAC
                      ____________________________________________________________
consensus GGATGATGTCACATTGCATCTCATCATTCAGAATTTTAATTGCCTGGGGTGCAGGAACAC
 
. : . : . : . : . : . :
JMSF024P24+ TTCTTGACAGAAGTTTAATGAGATCTCTAGCTTTAACTATAATATAGGGATCCCTTGTTT
JMFF019N12+ TTCTTGACAGAAGTTTAATGAGATCTCTAGCTTTAACTATAATATAGGGATCCCTTGTTT
JMSF029F21+ TTCTTGACAGAAGTTTAATGAGATCTCTAGCTTTAACTATAATATAGGGATCCCTTGTTT
                      ____________________________________________________________
consensus TTCTTGACAGAAGTTTAATGAGATCTCTAGCTTTAACTATAATATAGGGATCCCTTGTTT
 
. : . : . : . : . : . :
JMSF024P24+ TCCTAGTTGTCGAAACTGTCATGGATCCTCCAACCAAATTCAGCTCGCATGCGATTCCAT
JMFF019N12+ TCCTAGTTGTCGAAACTGTCATGGATCCTCCAACCAAATTCAGCTCGCATGCGATTCCAT
JMSF029F21+ TCCTAGTTGTCGAAACTGTCATGGATCCTCCAACCAAATTCAGCTCGCATGCGATTCCAT
JMSF003H10+ CCAACCAAATTCAGCTCGCATGCGATTCCAT
                      ____________________________________________________________
consensus TCCTAGTTGTCGAAACTGTCATGGATCCTCCAACCAAATTCAGCTCGCATGCGATTCCAT
 
. : . : . : . : . : . :
JMSF024P24+ GCTCTTTGAGTGCACCTTTGACATTAGGCCAGCATTCTTGCAAGTACTTCCCTCTGTAAT
JMFF019N12+ GCTCTTTGAGTGCACCTTTGACATTAGGCCAGCATTCTTGCAAGTACTTCCCTCTGTAAT
JMSF029F21+ GCTCTTTGAGTGCACCTTTGACATTAGGCCAGCATTCTTGCAAGTACTTCCCTCTGTAAT
JMSF003H10+ GCTCTTTGAGTGCACCTTTGACATTAGGCCAGCATTCTTGCAAGTACTTCCCTCTGTAAT
                      ____________________________________________________________
consensus GCTCTTTGAGTGCACCTTTGACATTAGGCCAGCATTCTTGCAAGTACTTCCCTCTGTAAT
 
. : . : . : . : . : . :
JMSF024P24+ TAGGGAAGAGAGTGGAGAAACAGCTTACTTCAAGCATGCCGCTTTCGTTCCAGGAAGGAT
JMFF019N12+ TAGGGAAGAGAGTGGAGAAACAGCTTACTTCAAGCATGCCGCTTTCGTTCCAGGAAGGAT
JMSF029F21+ TAGGGAAGAGAGTGGAGAAACAGCTTACTTCAAGCATGCCGCTTTCGTTCCAGGAAGGAT
JMSF003H10+ TAGGGAAGAGAGTGGAGAAACAGCTTACTTCAAGCATGCCGCTTTCGTTCCAGGAAGGAT
                      ____________________________________________________________
consensus TAGGGAAGAGAGTGGAGAAACAGCTTACTTCAAGCATGCCGCTTTCGTTCCAGGAAGGAT
 
. : . : . : . : . : . :
JMSF024P24+ CGAACTTCTCAATCTTCCAGTGGTCAATGCTCGGATCATCCCACGGCTTTGGTTTGTCGT
JMFF019N12+ CGAACTTCTCAATCTTCCAGTGGTCAATGCTCGGATCATCCCACGGCTTTGGTTTGTCGT
JMSF029F21+ CGAACTTCTCAATCTTCCAGTGGTCAATGCTCGGATCATCCCACGGCTTTGGTTTGTCGT
JMSF003H10+ CGAACTTCTCAATCTTCCAGTGGTCAATGCTCGGATCATCCCACGGCTTTGGTTTGTCGT
                      ____________________________________________________________
consensus CGAACTTCTCAATCTTCCAGTGGTCAATGCTCGGATCATCCCACGGCTTTGGTTTGTCGT
 
. : . : . : . : . : . :
JMSF024P24+ GCTTCCCCTTGTGTTTCTGCTTTCGATTCTTCAACTCTTCCGCCTCCTCCTCCTCCTCCC
JMFF019N12+ GCTTCCCCTTGTGTTTCTGCTTTCGATTCTTCAACTCTTCCGCCTCCTCCTCCTCCTCCC
JMSF029F21+ GCTTCCCCTTGTGTTTCTGCTTTCGATTCTTCAACTCTTCCGCCTCCTCCTCCTCCTCCC
JMSF003H10+ GCTTCCCCTTGTGTTTCTGCTTTCGATTCTTCAACTCTTCCGCCTCCTCCTCCTCCTCCC
                      ____________________________________________________________
consensus GCTTCCCCTTGTGTTTCTGCTTTCGATTCTTCAACTCTTCCGCCTCCTCCTCCTCCTCCC
 
. : . : . : . : . : . :
JMSF024P24+ CGCTATTGACGTTGTTCTCATTCTCCGACATCCTTACAGAGCTCCAGAAATTAGCTGTGA
JMFF019N12+ CGCTATTGACGTTGTTCTCATTCTCCGACATCCTTACAGAGCTCCAGAAATTAGCTGTGA
JMSF029F21+ CGCTATTGACGTTGTTCTCATTCTCCGACATCCTTACAGAGCTCCAGAAATTAGCTGTGA
JMSF003H10+ CGCTATTGACGTTGTTCTCATTCTCCGACATCCTTACAGAGCTCCAGAAATTAGCTGTGA
                      ____________________________________________________________
consensus CGCTATTGACGTTGTTCTCATTCTCCGACATCCTTACAGAGCTCCAGAAATTAGCTGTGA
 
. : . : . : . : . : . :
JMSF024P24+ TTTCCGAATTTTGGATTATACTTCACCGAGCGGAATTAGGGTCCGAGAGAGACTGAAATT
JMFF019N12+ TTTCCGAATTTTGGATTATACTTCACCGAGCGGAATTAGGGTCCGAGAG
JMSF029F21+ TTTCCGAATTTTGGATTATACTTCACCGAGCGGAATTAGGGTCCGAGAGAGACTGAAATT
JMSF003H10+ TTTCCGAATTTTGGATTATACTTCACCGAGCGGAATTAGGGTCCGAGAGAGACTGAAATT
                      ____________________________________________________________
consensus TTTCCGAATTTTGGATTATACTTCACCGAGCGGAATTAGGGTCCGAGAGAGACTGAAATT
 
. : . : . : . : . : . :
JMSF024P24+ CGGCTCCGACAGAGACTC
JMSF029F21+ CGGCTCCGACAGAGACTCTAATTAGGTTTAGCTGGGGTTCTGAAACAATGGCCGGCGGTC
JMSF003H10+ CGGCTCCGACAGAGACTCTAATTAGGTTTAGCTGGGGTTCTGAAACAATGGCCGGCGGTC
                      ____________________________________________________________
consensus CGGCTCCGACAGAGACTCTAATTAGGTTTAGCTGGGGTTCTGAAACAATGGCCGGCGGTC