Contig 003521:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF002C01Sequence397003521 (4)803003967 (4)gb|AAT40555.2|4e-83Translation elongation factor, putative [Solanum demissum]
JMSF003D17Sequence284003521 (4)696013236 (7)ref|XP_009592510.1|9e-11PREDICTED: protein IQ-DOMAIN 1 [Nicotiana tomentosiformis]
JMSF003E17Sequence446003521 (4)emb|CDO97460.1|2e-09unnamed protein product [Coffea canephora]730013236 (7)ref|XP_009592510.1|1e-10PREDICTED: protein IQ-DOMAIN 1 [Nicotiana tomentosiformis]
JMSF043H23Sequence501003521 (4)emb|CDO97460.1|7e-10unnamed protein product [Coffea canephora]729013236 (7)ref|XP_009592510.1|1e-10PREDICTED: protein IQ-DOMAIN 1 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMSF043H23+                                                  TTTTTTTTTTAAAGAACGTTT
                      ____________________________________________________________
consensus                                                    TTTTTTTTTTAAAGAACGTTT
 
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JMSF003E17+                                             TAATATCCATGGCATCTACACTAAGT
JMSF043H23+           TACACCACATACTATGTCAAGATGTTGCTCCCACTAATATCCATGGCATCTACACTAAGT
                      ____________________________________________________________
consensus             TACACCACATACTATGTCAAGATGTTGCTCCCACTAATATCCATGGCATCTACACTAAGT
 
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JMSF003E17+           AATGAACACCGGATGGCTGGAAAGGTGACATCAAAATTGATATGCAATTTTTCTCCTCTT
JMSF043H23+           AATGAACACCGGATGGCTGGAAAGGTGACATCAAAANTGATATGCAATTTTTCTCCTCTT
                      ____________________________________________________________
consensus             AATGAACACCGGATGGCTGGAAAGGTGACATCAAAATTGATATGCAATTTTTCTCCTCTT
 
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JMSF003E17+           GAAGTGTCTACATAAGCCTAGTCTCAGTAACATTATGGAGATACAGTCCTTTCACTTGCG
JMSF043H23+           GAAGTGTCTACATAAGCCTAGTCTCAGTAACATTATGGAGATACAGTCCTTTCACTTGCG
                      ____________________________________________________________
consensus             GAAGTGTCTACATAAGCCTAGTCTCAGTAACATTATGGAGATACAGTCCTTTCACTTGCG
 
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JMSF003E17+           ATGGAGACCGGAGATTTCAGCAGCAGCGACCGATGGCGACCTTTTGTGAAGAGTGACCGG
JMSF043H23+           ATGGAGACCGGAGATTTCAGCAGCAGCGACCGATGGCGACCTTTTGTGAAGAGTGACCGG
JMSF003D17+                           TCAGCAGCAGCGACCGATGGCGACCTTTTGTGAAGAGTGACCGG
                      ____________________________________________________________
consensus             ATGGAGACCGGAGATTTCAGCAGCAGCGACCGATGGCGACCTTTTGTGAAGAGTGACCGG
 
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JMSF003E17+           CGACCTTGTGCGAAGAGTGGCGGCAACGGAGCATGATCGGCAACCTTGCCCTGCTGTGCG
JMSF043H23+           CGACCTTGTGCGAAGAGTGGCGGCAACGGAGCATGATCGGCAACCTTGCCCTGCTGTGCG
JMSF002C01+                                                                 TGTGCG
JMSF003D17+           CGACCTTGTGCGAAGAGTGGCGGCAACGGAGCATGATCGGCAACCTTGCCCTGCTGTGCG
                      ____________________________________________________________
consensus             CGACCTTGTGCGAAGAGTGGCGGCAACGGAGCATGATCGGCAACCTTGCCCTGCTGTGCG
 
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JMSF003E17+           AAGACCGGCAGCGACGGAGGGTGACTGGCGACCTTCCTCTGCTCCAATGGAGAACGGGGA
JMSF043H23+           AAGACCGGCAGCGACGGAGGGTGACTGGCGACCTTCCTCTGCTCCAATGGAGAACGGGGA
JMSF002C01+           AAGACCGGCAGCGACGGAGGGTGATTGGCGACCTTCCTCTGCTCCAATGGAGAACGGGGA
JMSF003D17+           AAGACCGGCAGCGACGGAGGGTGACTGGCGACCTTCCTCTGCTCCAATGGAGAACGGGGA
                      ____________________________________________________________
consensus             AAGACCGGCAGCGACGGAGGGTGACTGGCGACCTTCCTCTGCTCCAATGGAGAACGGGGA
 
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JMSF003E17+           GACAACAAACAGACGAAGGAGGGCGTGACAGCGACGACTAGCGAAGATAAAAGCAATTGG
JMSF043H23+           GACAACAAACAGACGAAGGAGGGCGTGACAGCGACGACTAGCGAAGATAAAAGCAATTGG
JMSF002C01+           GACGACAAACAGGTGAAGGAGGGCGTGACAGCGACGACCAGTGAAGATAAAAGCAATTGG
JMSF003D17+           GACAACAAACAGACGAAGGAGGGCGTGACAGCGACGACTAGCGAAGATAAAAGCAATTGG
                      ____________________________________________________________
consensus             GACAACAAACAGACGAAGGAGGGCGTGACAGCGACGACTAGCGAAGATAAAAGCAATTGG
 
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JMSF003E17+           TTGGAGACGATGGAAAAGCCCTAATTTTGCTTTGGAGACTATTGCGTAACAGAGACTACC
JMSF043H23+           TTGGAGACGATGGAAAAGCCCTAATTTTGCTTTGGAGACTATTGCGTAACAGAGACTACC
JMSF002C01+           TTGGAGACGATGGAAAAGCCCTAA-TTTGCTTTGGAGACTATTGCCTAACAGAGACTA  
JMSF003D17+           TTGGAGACGATGGAAAAGCCCTAATTTTGCTTTGGAGACTATTGCGTAACAGAGACTACC
                      ____________________________________________________________
consensus             TTGGAGACGATGGAAAAGCCCTAATTTTGCTTTGGAGACTATTGCGTAACAGAGACTACC