Contig 003521:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF002C01Sequence397003521 (4)803003967 (4)gb|AAT40555.2|4e-83Translation elongation factor, putative [Solanum demissum]
JMSF003D17Sequence284003521 (4)696013236 (7)ref|XP_009592510.1|9e-11PREDICTED: protein IQ-DOMAIN 1 [Nicotiana tomentosiformis]
JMSF003E17Sequence446003521 (4)emb|CDO97460.1|2e-09unnamed protein product [Coffea canephora]730013236 (7)ref|XP_009592510.1|1e-10PREDICTED: protein IQ-DOMAIN 1 [Nicotiana tomentosiformis]
JMSF043H23Sequence501003521 (4)emb|CDO97460.1|7e-10unnamed protein product [Coffea canephora]729013236 (7)ref|XP_009592510.1|1e-10PREDICTED: protein IQ-DOMAIN 1 [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF043H23+ TTTTTTTTTTAAAGAACGTTT
                      ____________________________________________________________
consensus TTTTTTTTTTAAAGAACGTTT
 
. : . : . : . : . : . :
JMSF003E17+ TAATATCCATGGCATCTACACTAAGT
JMSF043H23+ TACACCACATACTATGTCAAGATGTTGCTCCCACTAATATCCATGGCATCTACACTAAGT
                      ____________________________________________________________
consensus TACACCACATACTATGTCAAGATGTTGCTCCCACTAATATCCATGGCATCTACACTAAGT
 
. : . : . : . : . : . :
JMSF003E17+ AATGAACACCGGATGGCTGGAAAGGTGACATCAAAATTGATATGCAATTTTTCTCCTCTT
JMSF043H23+ AATGAACACCGGATGGCTGGAAAGGTGACATCAAAANTGATATGCAATTTTTCTCCTCTT
                      ____________________________________________________________
consensus AATGAACACCGGATGGCTGGAAAGGTGACATCAAAATTGATATGCAATTTTTCTCCTCTT
 
. : . : . : . : . : . :
JMSF003E17+ GAAGTGTCTACATAAGCCTAGTCTCAGTAACATTATGGAGATACAGTCCTTTCACTTGCG
JMSF043H23+ GAAGTGTCTACATAAGCCTAGTCTCAGTAACATTATGGAGATACAGTCCTTTCACTTGCG
                      ____________________________________________________________
consensus GAAGTGTCTACATAAGCCTAGTCTCAGTAACATTATGGAGATACAGTCCTTTCACTTGCG
 
. : . : . : . : . : . :
JMSF003E17+ ATGGAGACCGGAGATTTCAGCAGCAGCGACCGATGGCGACCTTTTGTGAAGAGTGACCGG
JMSF043H23+ ATGGAGACCGGAGATTTCAGCAGCAGCGACCGATGGCGACCTTTTGTGAAGAGTGACCGG
JMSF003D17+ TCAGCAGCAGCGACCGATGGCGACCTTTTGTGAAGAGTGACCGG
                      ____________________________________________________________
consensus ATGGAGACCGGAGATTTCAGCAGCAGCGACCGATGGCGACCTTTTGTGAAGAGTGACCGG
 
. : . : . : . : . : . :
JMSF003E17+ CGACCTTGTGCGAAGAGTGGCGGCAACGGAGCATGATCGGCAACCTTGCCCTGCTGTGCG
JMSF043H23+ CGACCTTGTGCGAAGAGTGGCGGCAACGGAGCATGATCGGCAACCTTGCCCTGCTGTGCG
JMSF002C01+ TGTGCG
JMSF003D17+ CGACCTTGTGCGAAGAGTGGCGGCAACGGAGCATGATCGGCAACCTTGCCCTGCTGTGCG
                      ____________________________________________________________
consensus CGACCTTGTGCGAAGAGTGGCGGCAACGGAGCATGATCGGCAACCTTGCCCTGCTGTGCG
 
. : . : . : . : . : . :
JMSF003E17+ AAGACCGGCAGCGACGGAGGGTGACTGGCGACCTTCCTCTGCTCCAATGGAGAACGGGGA
JMSF043H23+ AAGACCGGCAGCGACGGAGGGTGACTGGCGACCTTCCTCTGCTCCAATGGAGAACGGGGA
JMSF002C01+ AAGACCGGCAGCGACGGAGGGTGATTGGCGACCTTCCTCTGCTCCAATGGAGAACGGGGA
JMSF003D17+ AAGACCGGCAGCGACGGAGGGTGACTGGCGACCTTCCTCTGCTCCAATGGAGAACGGGGA
                      ____________________________________________________________
consensus AAGACCGGCAGCGACGGAGGGTGACTGGCGACCTTCCTCTGCTCCAATGGAGAACGGGGA
 
. : . : . : . : . : . :
JMSF003E17+ GACAACAAACAGACGAAGGAGGGCGTGACAGCGACGACTAGCGAAGATAAAAGCAATTGG
JMSF043H23+ GACAACAAACAGACGAAGGAGGGCGTGACAGCGACGACTAGCGAAGATAAAAGCAATTGG
JMSF002C01+ GACGACAAACAGGTGAAGGAGGGCGTGACAGCGACGACCAGTGAAGATAAAAGCAATTGG
JMSF003D17+ GACAACAAACAGACGAAGGAGGGCGTGACAGCGACGACTAGCGAAGATAAAAGCAATTGG
                      ____________________________________________________________
consensus GACAACAAACAGACGAAGGAGGGCGTGACAGCGACGACTAGCGAAGATAAAAGCAATTGG
 
. : . : . : . : . : . :
JMSF003E17+ TTGGAGACGATGGAAAAGCCCTAATTTTGCTTTGGAGACTATTGCGTAACAGAGACTACC
JMSF043H23+ TTGGAGACGATGGAAAAGCCCTAATTTTGCTTTGGAGACTATTGCGTAACAGAGACTACC
JMSF002C01+ TTGGAGACGATGGAAAAGCCCTAA-TTTGCTTTGGAGACTATTGCCTAACAGAGACTA
JMSF003D17+ TTGGAGACGATGGAAAAGCCCTAATTTTGCTTTGGAGACTATTGCGTAACAGAGACTACC
                      ____________________________________________________________
consensus TTGGAGACGATGGAAAAGCCCTAATTTTGCTTTGGAGACTATTGCGTAACAGAGACTACC