Contig 003509:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF023B14Sequence460003509 (6)ref|XP_006347006.1|7e-33PREDICTED: auxin-repressed 12.5 kDa protein-like [Solanum tuberosum]653003509 (6)ref|XP_006347006.1|3e-25PREDICTED: auxin-repressed 12.5 kDa protein-like [Solanum tuberosum]
JMSF002C07Sequence267003509 (6)772003509 (6)ref|XP_006347006.1|1e-31PREDICTED: auxin-repressed 12.5 kDa protein-like [Solanum tuberosum]
JMSF025O14Sequence655003509 (6)ref|XP_006347006.1|2e-32PREDICTED: auxin-repressed 12.5 kDa protein-like [Solanum tuberosum]739003509 (6)ref|XP_006347006.1|4e-32PREDICTED: auxin-repressed 12.5 kDa protein-like [Solanum tuberosum]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF023B14-                     TTATTATTCATAATCATTATTATCACCCCTATTATTCTAATTTATTACT
rJMSF025O14-                                   CATTATTATCACCCCTATTATTCTAATTTATTACT
rJMSF002C07-                                   CATTATTATCACCCCTATTATTCTAATTTATTACT
                      ____________________________________________________________
consensus                        TTATTATTCATAATCATTATTATCACCCCTATTATTCTAATTTATTACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF023B14-          CGGAATCTCCGACTGATGCGCACACAGATTACTATAAACTGATTTGGCATCATCGGAGGA
rJMSF025O14-          CGGAATCTCCGACTGATGCGCACACAGATTACTATAAACTGATTTGGCATCATCGGAGGA
rJMSF002C07-          CGGAATCTCCGACTGATGCGCACACAGATTACTATAAACTGATTTGGCATCATCGGAGGA
                      ____________________________________________________________
consensus             CGGAATCTCCGACTGATGCGCACACAGATTACTATAAACTGATTTGGCATCATCGGAGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF023B14-          GTTAGGTCATCACAAAACCTTAATTACAACAAACCATACCAAAAACAAAACCAAAATTAA
rJMSF025O14-          GTTAGGTCATCACAAAACCTTAATTACAACAAACCATACCAAAAACAAAACCAAAATTAA
rJMSF002C07-          GTTAGGTCATCACAAAACCTTAATTACAACAAACCATACCAAAAACAAAACCAAAATTAA
JMSF025O14+                                     CAACAAACCATACCCAAAACAAAACCAAAATTAA
                      ____________________________________________________________
consensus             GTTAGGTCATCACAAAACCTTAATTACAACAAACCATACCAAAAACAAAACCAAAATTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF023B14-          ACAGGAAGCATGACGCCATAGCCGTAACTAATATTCTTAATTAAAGATAATTATACGCCA
rJMSF025O14-          ACAGGAAGCATGACGCCATAGCCGTAACTAATATTCTTAATTAAAGATAATTATACGCCA
rJMSF002C07-          ACAGGAAGCATGACGCCATAGCCGTAACTAATATTCTTAATTAAAGATAATTATACGCCA
JMSF025O14+           ACAGGAAGCATGACGCCATAGCCGTAACTAATATTCTTAATTAAAGATAATTATACGCCA
                      ____________________________________________________________
consensus             ACAGGAAGCATGACGCCATAGCCGTAACTAATATTCTTAATTAAAGATAATTATACGCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF023B14-          TAGCTACGCTTCTTAACCGGAAAATTTAACCGCCGGCAAAGCAACTGACGACGGACCCAC
rJMSF025O14-          TAGCTACGCTTCTTAACCGGAAAATTTAACCGCCGGCAAAGCAACTGACGACGGACCCAC
rJMSF002C07-          TAGCTACGCTTCTTAACCGGAAAATTTAACCGCCGGCAAAGCAACTGACGACGGACCCAC
JMSF025O14+           TAGCTACGCTTCTTAACCGGAAAATTTAACCGCCGGCAAAGCAACTGACGACGGACCCAC
                      ____________________________________________________________
consensus             TAGCTACGCTTCTTAACCGGAAAATTTAACCGCCGGCAAAGCAACTGACGACGGACCCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF023B14-          ACCCTATTTACACGTACGCAAACACACTTCTTGTCGGCGAATGGCACGAAATGAACCCCT
rJMSF025O14-          ACCCTATTTACACGTACGCAAACACACTTCTTGTCGGCGAATGGCACGAAATGAACCCCT
JMFF023B14+                  TTACACGTACGCAAACACACTTCTTGTCGGCGAATGGCACGAAATGAACCCCT
rJMSF002C07-          ACCCTATTTACACGTACGCAAACACACTTCTTGTCGGCGAATGGCACGAAATGAACCCCT
JMSF025O14+           ACCCTATTTACACGTACGCAAACACACTTCTTGTCGGCGAATGGCACGAAATGAACCCCT
                      ____________________________________________________________
consensus             ACCCTATTTACACGTACGCAAACACACTTCTTGTCGGCGAATGGCACGAAATGAACCCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF023B14-          CCGATCGATCTTCAACGATGCTTGGATCTTGTTTCACCACTATACAGCCAGTCATAAACA
rJMSF025O14-          CCGATCGATCTTCAACGATGCTTGGATCTTGTTTCACCACTATACAGCCAGTCATAAACA
JMFF023B14+           CCGATCGATCTTCAACGATGCTTGGATCTTGTTTCACCACTATACAGCCAGTCATAAACA
rJMSF002C07-          CCGATCGATCTTCAACGATGCTTGGATCTTGTTTCACCACTATACAGCCAGTCATAAACA
JMSF025O14+           CCGATCGATCTTCAACGATGCTTGGATCTTGTTTCACCACTATACAGCCAGTCATAAACA
                      ____________________________________________________________
consensus             CCGATCGATCTTCAACGATGCTTGGATCTTGTTTCACCACTATACAGCCAGTCATAAACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF023B14-          GTAGGAGAGTTGGTATTCTTAGGCTTGTCGAAAACCTGGGCGCCGATGTTCTTGGCGGCG
rJMSF025O14-          GTAGGAGAGTTGGTATTCTTAGGCTTGTCGAAAACCTGGGCGCCGATGTTCTTGGTGGCG
JMFF023B14+           GTAGGAGAGTTGGTATTCTTAGGCTTGTCGAAAACCTGGGCGCCGATGTTCTTGGCGGCG
rJMSF002C07-          GTAGGAGAGTTGGTATTCTTAGGCTTGTCGAAAACCTGGGCGCCGATGTTCTTGGTGGCG
JMSF025O14+           GTAGGAGAGTTGGTATTCTTAGGCTTGTCGAAAACCTGGGCGCCGATGTTCTTGGTGGCG
                      ____________________________________________________________
consensus             GTAGGAGAGTTGGTATTCTTAGGCTTGTCGAAAACCTGGGCGCCGATGTTCTTGGTGGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF023B14-          AGGTTGCTGCCGGGGTTGAAGACACTCCTCCACACGTTATCTTTACGCGCCGCCGTGGGC
rJMSF025O14-          AGGTTGCTGCCGGGGTTGAAGACACTCCTCCACACGTTATCTTTACGCGCCGCCGTGGGC
JMFF023B14+           AGGTTGCTGCCGGGGTTGAAGACACTCCTCCACACGTTATCTTTACGCGCCGCCGTGGGC
rJMSF002C07-          AGGTTGCTGCCGGGGTTGAAGACACTCCTCCACACGTTATCTTTACGCGCCGCCGTGGGC
JMSF025O14+           AGGTTGCTGCCGGGGTTGAAGACACTCCTCCACACGTTATCTTTACGCGCCGCCGTGGGC
                      ____________________________________________________________
consensus             AGGTTGCTGCCGGGGTTGAAGACACTCCTCCACACGTTATCTTTACGCGCCGCCGTGGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF023B14-          GACGGAGTGGTTGGTGTCATCGGACCTACAGGGCTGACCGGCATCGACAAAGAGCTCTGG
rJMSF025O14-          GACGGAGTGGTTGGTGTCATCGGACCTACGGGGCTGACCGGCATCGACAAAGAGCTCTGG
JMFF023B14+           GACGGAGTGGTTGGTGTCATCGGACCTACAGGGCTGACCGGCATCGACAAAGAGCTCTGG
rJMSF002C07-          GACGGAGTGGTTGGTGTCATCGGACCTACAGGGCTGACCGGCATCGACAAAGAGCTCTGG
JMSF025O14+           GACGGAGTGGTTGGTGTCATCGGACCTACGGGGCTGACCGGCATCGACAAAGAGCTCTGG
                      ____________________________________________________________
consensus             GACGGAGTGGTTGGTGTCATCGGACCTACAGGGCTGACCGGCATCGACAAAGAGCTCTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF023B14-          TACTTGCTGGATCCTTCTCCAACCCCAGAAT                             
rJMSF025O14-          TACTTGCTGGATCCTTCTCCAACCCCAGAATTTGTTTTGACAGTAACTGTCTGCGTGCGA
JMFF023B14+           TACTTGCTGGATCCTTCTCCAACCCCAGAAT                             
rJMSF002C07-          TACTTGCTGGATCCTTCTCCAACCCCAGAATTTGTTTTGACAGTAACTGTCTGCGTGCGA
JMSF025O14+           TACTTGCTGGATCCTTCTCCAACCCCAGAATTTGTTTTGACAGTAACTGTCTGCGTGCGA
JMSF002C07+                                            GTTTTGACAGTAACTGTCTGCGTGCGA
                      ____________________________________________________________
consensus             TACTTGCTGGATCCTTCTCCAACCCCAGAATTTGTTTTGACAGTAACTGTCTGCGTGCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF025O14-          AGCTTGTCGAAACCTCGATCTCCATTTCTACGAACATCATCCCAACTCCTATCAATCAAA
rJMSF002C07-          AGCTTGTCGAAACCTCGATCTCCATTTCTACGAACATCATCCCAACTACTATCAATCAAA
JMSF025O14+           AGCTTGTCGAAACCTCGATCTCCATTTCTACGAACATCATCCCAACTCCTATCAATCAAA
JMSF002C07+           AGCTTGTCGAAACCTCGATCTCCATTTCTACGAACATCATCCCAACTACTATCAATCAAA
                      ____________________________________________________________
consensus             AGCTTGTCGAAACCTCGATCTCCATTTCTACGAACATCATCCCAACTCCTATCAATCAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF025O14-          ACCATCTTTAACAACGTTTGCCTTCCTTCTTTTTACCCCTTAGC                
rJMSF002C07-          ACCATCTTTAACAACGTTTGCCTTCCTTCTTTTTACCCCTTAGCTTCTGTGTTTTCTCCC
JMSF025O14+           ACCATCTTTAACAACGTTTGCCTTCCTTCTTTTTACCCCTTAGCTTCTGTGTTTTCTCCC
JMSF002C07+           ACCATCTTTAACAACGTTTGCCTTCCTTCTTTTTACCCCTTAGCTTCTGTGTTTTCTCCC
                      ____________________________________________________________
consensus             ACCATCTTTAACAACGTTTGCCTTCCTTCTTTTTACCCCTTAGCTTCTGTGTTTTCTCCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF002C07-          TAGCTATGGCGGCTAA                                            
JMSF025O14+           TAGCTATGGCGGCTAA                                            
JMSF002C07+           TAGCTATGGCGGCTAAAGTGAGAAACTTCTTTTACTTGGCCTTGTGATATATAGAGGCTT
                      ____________________________________________________________
consensus             TAGCTATGGCGGCTAAAGTGAGAAACTTCTTTTACTTGGCCTTGTGATATATAGAGGCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF002C07+           TGGACTTTTTGGAAAGATCTCCCCACACTCTTTACCACGGTTAACTTTAATTTGATTATC
                      ____________________________________________________________
consensus             TGGACTTTTTGGAAAGATCTCCCCACACTCTTTACCACGGTTAACTTTAATTTGATTATC