| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF027O07 | Sequence | 577 | 003506 (4) | gb|KHG11946.1| | 1e-08 | Serine/threonine-protein kinase HT1 [Gossypium arboreum] | 725 | 013735 (3) | emb|CDO99532.1| | 3e-98 | unnamed protein product [Coffea canephora] |
| JMFF042O18 | Sequence | 615 | 003506 (4) | ref|XP_011013425.1| | 5e-12 | PREDICTED: serine/threonine-protein kinase HT1-like [Populus euphratica] ref|XP | 619 | 015966 | ref|XP_010647093.1| | 4e-65 | PREDICTED: serine/threonine-protein kinase HT1 [Vitis vinifera] emb|CAN83589.1| |
| JMSF001P10 | Sequence | 262 | 003506 (4) | 731 | 013735 (3) | emb|CDO99532.1| | 2e-107 | unnamed protein product [Coffea canephora] | |||
| JMSF032D06 | Sequence | 677 | 003506 (4) | ref|XP_011013425.1| | 3e-13 | PREDICTED: serine/threonine-protein kinase HT1-like [Populus euphratica] ref|XP | 699 | 013735 (3) | emb|CDO99532.1| | 8e-111 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
JMSF032D06+ TGAACAGTCGGCCTCGAGATGG
____________________________________________________________
consensus TGAACAGTCGGCCTCGAGATGG
. : . : . : . : . : . :
JMFF042O18+ AGATTTCAGACCGGGATTTCGCCCCTGCTGAATGG
JMSF032D06+ GGTNGGCAAAACTCGTGCCAGGCCTAGATTTCAGACCGGGATTTCGCCCCTGNTGAATGG
____________________________________________________________
consensus GGTNGGCAAAACTCGTGCCAGGCCTAGATTTCAGACCGGGATTTCGCCCCTGCTGAATGG
. : . : . : . : . : . :
JMFF027O07+ TCGGGAGAGACGCCAATCTGGCTGCATCTAGCCTATGGCAAACCGTGTGAGAGTAAT
JMFF042O18+ TAATCGGGAGAGACGCCAATCTGGCTGCATCTAGCCTATGGCAAACCGTGTGAGAGTAAT
JMSF032D06+ TAATCGGGAGAGACGCCAATCTGGCTGCATNTAGCNTATGGCAAACCGTGTGAGAGTAAT
____________________________________________________________
consensus TAATCGGGAGAGACGCCAATCTGGCTGCATCTAGCCTATGGCAAACCGTGTGAGAGTAAT
. : . : . : . : . : . :
JMFF027O07+ TCGTTCGCCTAATCCAAGAGTTAGCCTCTTCAGCCATCTA-TCTCCCTCCCACCTACCTA
JMFF042O18+ TCGTTCGCCTAATCCAAGAGTTAGCCTCTTCAGCCATCTA-TCTCCCTCCCACCTACCTA
JMSF032D06+ TCGTTCGCCTAATCCAAGAGTTAGCCTCTTCAGCCATCTATTTTCCCTCCCACCTACCTA
____________________________________________________________
consensus TCGTTCGCCTAATCCAAGAGTTAGCCTCTTCAGCCATCTA-TCTCCCTCCCACCTACCTA
. : . : . : . : . : . :
JMFF027O07+ CCCTACAGCACCTGGTAACCACTCAAAAATGTGTTCTTTTCTCCTTCTTCACCTCAGAAT
JMFF042O18+ CCCTACAGCACCTGGTAACCACTCAAAAATGTGTTCTTTTCTCCTTCTTCACCTCAGAAT
JMSF032D06+ CCCTACAGCACCTGGTAACCACTCAAAAATGTGTTCTTTTCTCCTTCTTCACCTCAGAAT
____________________________________________________________
consensus CCCTACAGCACCTGGTAACCACTCAAAAATGTGTTCTTTTCTCCTTCTTCACCTCAGAAT
. : . : . : . : . : . :
JMFF027O07+ AAAGTGCAAATTTAGCAATCCCCTCCAGAATGCAAATATGATCTCGAAATTCCCATGTCA
JMFF042O18+ AAAGTGCAAATTTAGCAATCCCCTCCAGAATGCAAATATGATCTCGAAATTCCCATGTCA
JMSF032D06+ AAAGTGCAAATTTAGCAATCCCCTCCAGAATGCAAATATGATCTCGAAATTCCCATGTCA
____________________________________________________________
consensus AAAGTGCAAATTTAGCAATCCCCTCCAGAATGCAAATATGATCTCGAAATTCCCATGTCA
. : . : . : . : . : . :
JMFF027O07+ ACAGTTCATCCAAACTCATCAAAATAATTGGAGAAGCAAATTCTCAACCATTAGTACCAT
JMFF042O18+ ACAGTTCATCCAAACTCATCAAAATAATTGGAGAAGCAAATTCTCAACCATTAGTACCAT
JMSF032D06+ ACAGTTCATCCAAACTCATCAAAATAATTGGAGAAGCAAATTCTCAACCATTAGTACCAT
JMSF001P10+ AATTCTCAACCANTAGTACCAT
____________________________________________________________
consensus ACAGTTCATCCAAACTCATCAAAATAATTGGAGAAGCAAATTCTCAACCATTAGTACCAT
. : . : . : . : . : . :
JMFF027O07+ GCAAGAATCCTCAAAAAACAGAAGGAAAAATGAGAATTTTCAGCTTCAAAGTCAAACATC
JMFF042O18+ GCAAGAATCCTCAAAAAACAGAAGGAAAAATGAGAATTTTCAGCTTCAAAGTCAAACATC
JMSF032D06+ GCAAGAATCCTCAAAAAACAGAAGGAAAAATGAGAATTTTCAGCTTCAAAGTCAAACATC
JMSF001P10+ GCAAGANTCCTCAAAAAACAGAAGGAAAAATGAGAATTTTCAGCTTCAAAGTCAAACATC
____________________________________________________________
consensus GCAAGAATCCTCAAAAAACAGAAGGAAAAATGAGAATTTTCAGCTTCAAAGTCAAACATC
. : . : . : . : . : . :
JMFF027O07+ ACCGCCTTGGCGCCTTCCTTCAGAGCCGTTACGGAAAAGCTTTATCGGGTAATATAATCT
JMFF042O18+ ACCGCCTTGGCGCCTTCCTTCAGAGCCGTTACGGAAAAGCTTTATCGGGTAATATAATCT
JMSF032D06+ ACCGCCTTGGCGCCTTCCTTCAGAGCCGTTACGGAAAAGCTTTATCGGGTAATATAATCT
JMSF001P10+ ACCGCCTTGGCGCCTTCCTTCAGAGCCGTTACGGAAAAGCTTTATCGGGTAATATAATCT
____________________________________________________________
consensus ACCGCCTTGGCGCCTTCCTTCAGAGCCGTTACGGAAAAGCTTTATCGGGTAATATAATCT
. : . : . : . : . : . :
JMFF027O07+ CCTGTTCTTCGGAAGATTCCCGAGTAAAATTAACGATCTTTGACAAGAATCTCACTGCCC
JMFF042O18+ CCTGTTCTTCGGAAGATTCCCGAGTAAAATTAACGATCTTTGACAAGAATCTCACTGCCC
JMSF032D06+ CCTGTTCTTCGGAAGATTCCCGAGTAAAATTAACGATCTTTGACAAGAATCTCACTGCCC
JMSF001P10+ CCTGTTCTTCGGAAGATTCCCGAGTAAAATTAACGATCTTTGACAAGAATCTCACTGCCC
____________________________________________________________
consensus CCTGTTCTTCGGAAGATTCCCGAGTAAAATTAACGATCTTTGACAAGAATCTCACTGCCC
. : . : . : . : . : . :
JMFF027O07+ TTCTCTCTCTCTCTCCCTCTCTCTCTCTCTTCTCCCCACTTCACAGCTGCACCAACC
JMFF042O18+ TTCTCTCTCTCTCTCCCTCTCTCTCTCTCTTCTCCCCACTTCACAGCTGCACCAACC
JMSF032D06+ TTCTCTCTCTCTCTCCCTCTCTCTCTCTCTTCTCCCCACTTCACAGCTGCACCAACC
JMSF001P10+ TTCTCTCTCTCTCTCCCTCTCTCTCTCTCTTCTCCCCACTTCACAGCTGCACCAACCTCC
____________________________________________________________
consensus TTCTCTCTCTCTCTCCCTCTCTCTCTCTCTTCTCCCCACTTCACAGCTGCACCAACCTCC