Contig 003505:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001C15Sequence508003505 (7)emb|CAA70700.1|2e-43transformer-SR ribonucleoprotein [Nicotiana tabacum]692003505 (7)ref|XP_011022229.1|4e-28PREDICTED: serine/arginine-rich splicing factor SR45a [Populus euphratica]
JMFF012N23Sequence556003505 (7)emb|CDP01837.1|4e-41unnamed protein product [Coffea canephora]
JMFF034H01Sequence589003505 (7)gb|EYU30367.1|4e-50hypothetical protein MIMGU_mgv1a012795mg [Erythranthe guttata]648004067 (2)emb|CDP01836.1|8e-11unnamed protein product [Coffea canephora]
JMFN028M24Sequence609003505 (7)ref|XP_011022229.1|2e-16PREDICTED: serine/arginine-rich splicing factor SR45a [Populus euphratica]
JMSF001O15Sequence166003505 (7)741003505 (7)emb|CAA70700.1|3e-54transformer-SR ribonucleoprotein [Nicotiana tabacum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFN028M24+ AAATGGTGTTCAAGAATTCAA
rJMFF001C15- AGTAATGGAAGAAATGGTGTTCAAGAATTCAA
                      ____________________________________________________________
consensus AGTAATGGAAGAAATGGTGTTCAAGAATTCAA
 
. : . : . : . : . : . :
JMFN028M24+ AGGAACAGTGCCAAGACAATTTTATGTTTAAGGGTTTCGACTACAAGTAGCAAGGAAGAC
rJMFF001C15- AGGAACAGTGCCAAGACAATTTTATGTTTAAGGGTTTCGACTACAAGTAGCAAGGAAGAC
rJMSF001O15- ATTTTATGTTTAAGGGTTTCGACTACAAGTAGCAAGGAAGAC
                      ____________________________________________________________
consensus AGGAACAGTGCCAAGACAATTTTATGTTTAAGGGTTTCGACTACAAGTAGCAAGGAAGAC
 
. : . : . : . : . : . :
JMFN028M24+ ACAGAGCAGTAAAGGTCCCTTACGATACACTATAGATGACAGAGACAGTGATGAAAGATC
rJMFF001C15- ACAGAGCAGTAAAGGTCCCTTACGATACACTATAGATGACAGAGACAGTGATGAAAGATC
rJMSF001O15- ACAGAGCAGTAAAGGTCCCTTACGATACACTATAGATGACAGAGACAGTGATGAAAGATC
                      ____________________________________________________________
consensus ACAGAGCAGTAAAGGTCCCTTACGATACACTATAGATGACAGAGACAGTGATGAAAGATC
 
. : . : . : . : . : . :
JMFN028M24+ CTTCTATATCTAGATTCTGGAACCATGAGCATAGTTCCTTTCAAGATGGGGGTGGTAAGG
rJMFF001C15- CTTCTATATCTAGATTCTGGAACCATGAGCATAGTTCCTTTCAAGATGGGGGTGGTAAGG
rJMSF001O15- CTTCTATATCTAGATTCTGGAACCATGAGCATAGTTCCTTTCAAGATGGGGGTGGTAAGG
                      ____________________________________________________________
consensus CTTCTATATCTAGATTCTGGAACCATGAGCATAGTTCCTTTCAAGATGGGGGTGGTAAGG
 
. : . : . : . : . : . :
JMFN028M24+ AGAATATGATCTAGACATCTCCCTCCTTGATCGTCCACCATAAGGCGAACGCCTTGGAGG
rJMFF001C15- AGAATATGATCTAGACATCTCCCTCCTTGATCGTCCACCATAAGGCGAACGCCTTGGAGG
rJMSF001O15- AGAATATGATCTAGACATCTCCCTCCTTGATCGTCCACCATAAGGCGAACGCCTTGGAGG
                      ____________________________________________________________
consensus AGAATATGATCTAGACATCTCCCTCCTTGATCGTCCACCATAAGGCGAACGCCTTGGAGG
 
. : . : . : . : . : . :
JMFN028M24+ AGAATAATCTCGACCGCCTCCATATGGTGATCGCCTTGGAGAATAATCACGACCACCTCC
rJMFF001C15- AGAATAATCTCGACCGCCTCCATATGGTGATCGCCTTGGAGAATAATCACGACCACCTCC
rJMSF001O15- AGAATAATCTCGACCGCCTCCATATGGTGATCGCCTTGGAGAATAATCACGACCACCTCC
                      ____________________________________________________________
consensus AGAATAATCTCGACCGCCTCCATATGGTGATCGCCTTGGAGAATAATCACGACCACCTCC
 
. : . : . : . : . : . :
JMFN028M24+ GTATGGTGAACGCCTTGGAGAATAGTCTCGACCGCCTCGATATGGTGGTGAGCGCCTTGG
rJMFF001C15- GTATGGTGAACGCCTTGGAGAATAGTCTCGACCGCCTCGATATGGTGGTGAGCGCCTTGG
rJMSF001O15- GTATGGTGAACGCCTTGGAGAATAGTCTCGACCGCCTCGATATGGTGGTGAGCGCCTTGG
                      ____________________________________________________________
consensus GTATGGTGAACGCCTTGGAGAATAGTCTCGACCGCCTCGATATGGTGGTGAGCGCCTTGG
 
. : . : . : . : . : . :
JMFN028M24+ AGATCTTCGGTGGTATGCATAGTCATCATAGCCACGGTACCTACCACGGTCGCCGCGGTC
rJMFF001C15- AGATCTTCGGTGGTATGCATAGTCATCATAGCCACGGTACCTACCACGGTCGCCGCGGTC
rJMSF001O15- AGATCTTCGGTGGTATGCATAGTCATCATAGCCACGGTACCTACCACGGTCGCCGCGGTC
                      ____________________________________________________________
consensus AGATCTTCGGTGGTATGCATAGTCATCATAGCCACGGTACCTACCACGGTCGCCGCGGTC
 
. : . : . : . : . : . :
JMFN028M24+ GCCACGGTCACCACCACGATAACCTTCTGCCCTGCTGTTCTTGAGTCCAAGATAGTGTCC
rJMFF001C15- GCCACGGTCACCACCACGATAACCTTCTGCCCTGCTGTTCTTGAGTCCAAGATAGTGTCC
rJMSF001O15- GCCACGGTCACCACCACGATAACCTTCTGCCCTGCTGTTCTTGAGTCCAAGATAGTGTCC
JMFF012N23+ TGAGTCCAAGATAGTGTCC
                      ____________________________________________________________
consensus GCCACGGTCACCACCACGATAACCTTCTGCCCTGCTGTTCTTGAGTCCAAGATAGTGTCC
 
. : . : . : . : . : . :
JMFN028M24+ AGGTGTTGGAGTTCTAGGTCGTTTCCTTCTGGACTTCTCCACA-GTTATGTATCGACCTT
rJMFF001C15- AGGTGTTGGAGTTCTAGGTCGTTTCCTTCTGGACTTCTCCACA-GTTATGTATCGACCTT
rJMSF001O15- AGGTGTTGGAGTTCTAGGTCGTTTCCTTCTGGACTTCTCCACA-GTTATGTATCGACCTT
JMFF034H01+ CTTCTCCACA-GTTATGTATCGGCCTT
JMFF012N23+ AGGTGTTGGAGTTCTAGGTCGTTTCCTTCTGGACTTCTCCACANGTTATGTATCGACCTT
JMFF001C15+ CTGGACTTCTCCACA-GTTATGTATCGACCTT
                      ____________________________________________________________
consensus AGGTGTTGGAGTTCTAGGTCGTTTCCTTCTGGACTTCTCCACA-GTTATGTATCGACCTT
 
. : . : . : . : . : . :
JMFN028M24+ CAAGAACAGACTGATTGAGGTGCTTTACGCAGCGATTGGCATCATCAGC
rJMFF001C15- CAAGAACAGACTGATTGAGGTGCTTTACGCAGCGATTGGCATCATCAGCATTGTCCATTG
rJMSF001O15- CAAGAACAGACTGATTGAGGTGCTTTACGCAGCGATTGGCATCATCAGCATTGTCCATTG
JMFF034H01+ CAAGAACTGACTGATTGAGGTGCTTGACACAGCGACTGGCATCATCATCATTATCCATAG
JMFF012N23+ CAAGAACAGACTGATTGAGGTGCTTTACGCAGCGATTGGCATCATCAGCATTGTCCATTG
JMFF001C15+ CAAGAACAGACTGATTGAGGTGCTTTACGCAGCGATTGGCATCATCAGCATTGTCCATTG
                      ____________________________________________________________
consensus CAAGAACAGACTGATTGAGGTGCTTTACGCAGCGATTGGCATCATCAGCATTGTCCATTG
 
. : . : . : . : . : . :
rJMFF001C15- TTACAAAAGCAAAACCACGAGAAACACGAGAACGTGG
rJMSF001O15- TTACAAAAGCAAAACCACGAGAAACACGAGAACGTGGCTCCACTACCAAAAATACTGATT
JMFF034H01+ TTACAAAAGCAAAACCACGAGAGATGCGAGACCGTGGCTCCACAACCAAAAACACTGATT
JMFF012N23+ TTACAAAAGCAAAACCACGAGAAACACGAGAACGTGGCTCCACTACCAAAAATACTGATT
JMFF001C15+ TTACAAAAGCAAAACCACGAGAAACACGAGAACGTGGCTCCACTACCAAAAATACTGATT
                      ____________________________________________________________
consensus TTACAAAAGCAAAACCACGAGAAACACGAGAACGTGGCTCCACTACCAAAAATACTGATT
 
. : . : . : . : . : . :
rJMSF001O15- TTACCTTCCCTTCCTTAGAGAAGTGGTCTTCAAGGTCCCTTTCTGTGACCCTTGTAGATA
JMFF034H01+ TTACCTTTCCCTCCTTAGAGAAATGCTCTTCAAGATCCCTTTCTGTCACTCTAGTAGATA
JMFF012N23+ TTACCTTCCCTTCCTTAGAGAAGTGGTCTTCAAGGTCCCTTTCTGTGACCCTTGTAGATA
JMFF001C15+ TTACCTTCCCTTCCTTAGAGAAGTGGTCTTCAAGGTCCCTTTCTGTGACCCTTGTAGATA
                      ____________________________________________________________
consensus TTACCTTCCCTTCCTTAGAGAAGTGGTCTTCAAGGTCCCTTTCTGTGACCCTTGTAGATA
 
. : . : . : . : . : . :
rJMSF001O15- AACCAGTCACATAGAGAGTATCTCCAGGATTA
JMFF034H01+ AACCAGTGACATAGAGTGTGTCTCCAGGATTA
JMFF012N23+ AACCAGTCACATAGAGAGTATCTCCAGGATTAGAAGGCGGGTCCCTGCCACGACCTCTGG
JMFF001C15+ AACCAGTCACATAGAGAGTATCTCCAGGATTAGAAGGCGGGTCCCTGCCACGACCTCTGG
                      ____________________________________________________________
consensus AACCAGTCACATAGAGAGTATCTCCAGGATTAGAAGGCGGGTCCCTGCCACGACCTCTGG
 
. : . : . : . : . : . :
JMFF012N23+ ATGTGGACCTTCCCCTTGGTCTTGACAATGACCTAGACCTAGATCTTGATCTTGACCTTT
JMFF001C15+ ATGTGGACCTTCCCCTTGGTCTTGACAATGACCTAGACCTAGATCTTGATCTTGACCTTT
                      ____________________________________________________________
consensus ATGTGGACCTTCCCCTTGGTCTTGACAATGACCTAGACCTAGATCTTGATCTTGACCTTT
 
. : . : . : . : . : . :
JMFF012N23+ CTTCCCAAGGGGAAGGAGAGCGTGAATGCCTTTTCCGAGGAGAGTCGGCCATTTCCGAGC
JMFF001C15+ CTTCCCAAGGGGAAGGAGAGCGTGAATGCCTTTTCCGAGGAGAGTCGGCCATTTCCGAGC
JMSF001O15+ GGAGAGCGTGAATNCTTTTTCCGAGGAGAGTCGGCCATTTCCGAGC
                      ____________________________________________________________
consensus CTTCCCAAGGGGAAGGAGAGCGTGAATGCCTTTTCCGAGGAGAGTCGGCCATTTCCGAGC
 
. : . : . : . : . : . :
JMFF012N23+ AGAGAAAAGGGAAAGAAAACCCTAAACCGCGAGAGAGTTGCAGAAAAGGAGTCGGTACAC
JMFF001C15+ AGAGAAAAGGGAAAGAAAACCCTAAACCGCGAGAGAGTTGCAGAAAAGGAGTCGGTACAC
JMSF001O15+ AGAGAAAAGGGAAAGAAAACCCTAAACCGCGAGAGAGTTGCAGAAAAGGAGTCGGTACAC
                      ____________________________________________________________
consensus AGAGAAAAGGGAAAGAAAACCCTAAACCGCGAGAGAGTTGCAGAAAAGGAGTCGGTACAC
 
. : . : . : . : . : . :
JMFF012N23+ CGGGGATCACCAAGACGGGAAGGGGGGCGGAGATGGAAGGAAGTTGTAGATAC
JMFF001C15+ CGGGGATCACCAAGACGGGAAGGGGGGCGGAGATGGAAGGAAGTTGTAGATAC
JMSF001O15+ CGGGGATCACCAAGACGGGAAGGGGGGCGGAGATGGAAGGAAGTTGTAGATACACACACC
                      ____________________________________________________________
consensus CGGGGATCACCAAGACGGGAAGGGGGGCGGAGATGGAAGGAAGTTGTAGATACACACACC