| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF001C15 | Sequence | 508 | 003505 (7) | emb|CAA70700.1| | 2e-43 | transformer-SR ribonucleoprotein [Nicotiana tabacum] | 692 | 003505 (7) | ref|XP_011022229.1| | 4e-28 | PREDICTED: serine/arginine-rich splicing factor SR45a [Populus euphratica] |
| JMFF012N23 | Sequence | 556 | 003505 (7) | emb|CDP01837.1| | 4e-41 | unnamed protein product [Coffea canephora] | |||||
| JMFF034H01 | Sequence | 589 | 003505 (7) | gb|EYU30367.1| | 4e-50 | hypothetical protein MIMGU_mgv1a012795mg [Erythranthe guttata] | 648 | 004067 (2) | emb|CDP01836.1| | 8e-11 | unnamed protein product [Coffea canephora] |
| JMFN028M24 | Sequence | 609 | 003505 (7) | ref|XP_011022229.1| | 2e-16 | PREDICTED: serine/arginine-rich splicing factor SR45a [Populus euphratica] | |||||
| JMSF001O15 | Sequence | 166 | 003505 (7) | 741 | 003505 (7) | emb|CAA70700.1| | 3e-54 | transformer-SR ribonucleoprotein [Nicotiana tabacum] | |||
This contig is upended
. : . : . : . : . : . :
JMFN028M24+ AAATGGTGTTCAAGAATTCAA
rJMFF001C15- AGTAATGGAAGAAATGGTGTTCAAGAATTCAA
____________________________________________________________
consensus AGTAATGGAAGAAATGGTGTTCAAGAATTCAA
. : . : . : . : . : . :
JMFN028M24+ AGGAACAGTGCCAAGACAATTTTATGTTTAAGGGTTTCGACTACAAGTAGCAAGGAAGAC
rJMFF001C15- AGGAACAGTGCCAAGACAATTTTATGTTTAAGGGTTTCGACTACAAGTAGCAAGGAAGAC
rJMSF001O15- ATTTTATGTTTAAGGGTTTCGACTACAAGTAGCAAGGAAGAC
____________________________________________________________
consensus AGGAACAGTGCCAAGACAATTTTATGTTTAAGGGTTTCGACTACAAGTAGCAAGGAAGAC
. : . : . : . : . : . :
JMFN028M24+ ACAGAGCAGTAAAGGTCCCTTACGATACACTATAGATGACAGAGACAGTGATGAAAGATC
rJMFF001C15- ACAGAGCAGTAAAGGTCCCTTACGATACACTATAGATGACAGAGACAGTGATGAAAGATC
rJMSF001O15- ACAGAGCAGTAAAGGTCCCTTACGATACACTATAGATGACAGAGACAGTGATGAAAGATC
____________________________________________________________
consensus ACAGAGCAGTAAAGGTCCCTTACGATACACTATAGATGACAGAGACAGTGATGAAAGATC
. : . : . : . : . : . :
JMFN028M24+ CTTCTATATCTAGATTCTGGAACCATGAGCATAGTTCCTTTCAAGATGGGGGTGGTAAGG
rJMFF001C15- CTTCTATATCTAGATTCTGGAACCATGAGCATAGTTCCTTTCAAGATGGGGGTGGTAAGG
rJMSF001O15- CTTCTATATCTAGATTCTGGAACCATGAGCATAGTTCCTTTCAAGATGGGGGTGGTAAGG
____________________________________________________________
consensus CTTCTATATCTAGATTCTGGAACCATGAGCATAGTTCCTTTCAAGATGGGGGTGGTAAGG
. : . : . : . : . : . :
JMFN028M24+ AGAATATGATCTAGACATCTCCCTCCTTGATCGTCCACCATAAGGCGAACGCCTTGGAGG
rJMFF001C15- AGAATATGATCTAGACATCTCCCTCCTTGATCGTCCACCATAAGGCGAACGCCTTGGAGG
rJMSF001O15- AGAATATGATCTAGACATCTCCCTCCTTGATCGTCCACCATAAGGCGAACGCCTTGGAGG
____________________________________________________________
consensus AGAATATGATCTAGACATCTCCCTCCTTGATCGTCCACCATAAGGCGAACGCCTTGGAGG
. : . : . : . : . : . :
JMFN028M24+ AGAATAATCTCGACCGCCTCCATATGGTGATCGCCTTGGAGAATAATCACGACCACCTCC
rJMFF001C15- AGAATAATCTCGACCGCCTCCATATGGTGATCGCCTTGGAGAATAATCACGACCACCTCC
rJMSF001O15- AGAATAATCTCGACCGCCTCCATATGGTGATCGCCTTGGAGAATAATCACGACCACCTCC
____________________________________________________________
consensus AGAATAATCTCGACCGCCTCCATATGGTGATCGCCTTGGAGAATAATCACGACCACCTCC
. : . : . : . : . : . :
JMFN028M24+ GTATGGTGAACGCCTTGGAGAATAGTCTCGACCGCCTCGATATGGTGGTGAGCGCCTTGG
rJMFF001C15- GTATGGTGAACGCCTTGGAGAATAGTCTCGACCGCCTCGATATGGTGGTGAGCGCCTTGG
rJMSF001O15- GTATGGTGAACGCCTTGGAGAATAGTCTCGACCGCCTCGATATGGTGGTGAGCGCCTTGG
____________________________________________________________
consensus GTATGGTGAACGCCTTGGAGAATAGTCTCGACCGCCTCGATATGGTGGTGAGCGCCTTGG
. : . : . : . : . : . :
JMFN028M24+ AGATCTTCGGTGGTATGCATAGTCATCATAGCCACGGTACCTACCACGGTCGCCGCGGTC
rJMFF001C15- AGATCTTCGGTGGTATGCATAGTCATCATAGCCACGGTACCTACCACGGTCGCCGCGGTC
rJMSF001O15- AGATCTTCGGTGGTATGCATAGTCATCATAGCCACGGTACCTACCACGGTCGCCGCGGTC
____________________________________________________________
consensus AGATCTTCGGTGGTATGCATAGTCATCATAGCCACGGTACCTACCACGGTCGCCGCGGTC
. : . : . : . : . : . :
JMFN028M24+ GCCACGGTCACCACCACGATAACCTTCTGCCCTGCTGTTCTTGAGTCCAAGATAGTGTCC
rJMFF001C15- GCCACGGTCACCACCACGATAACCTTCTGCCCTGCTGTTCTTGAGTCCAAGATAGTGTCC
rJMSF001O15- GCCACGGTCACCACCACGATAACCTTCTGCCCTGCTGTTCTTGAGTCCAAGATAGTGTCC
JMFF012N23+ TGAGTCCAAGATAGTGTCC
____________________________________________________________
consensus GCCACGGTCACCACCACGATAACCTTCTGCCCTGCTGTTCTTGAGTCCAAGATAGTGTCC
. : . : . : . : . : . :
JMFN028M24+ AGGTGTTGGAGTTCTAGGTCGTTTCCTTCTGGACTTCTCCACA-GTTATGTATCGACCTT
rJMFF001C15- AGGTGTTGGAGTTCTAGGTCGTTTCCTTCTGGACTTCTCCACA-GTTATGTATCGACCTT
rJMSF001O15- AGGTGTTGGAGTTCTAGGTCGTTTCCTTCTGGACTTCTCCACA-GTTATGTATCGACCTT
JMFF034H01+ CTTCTCCACA-GTTATGTATCGGCCTT
JMFF012N23+ AGGTGTTGGAGTTCTAGGTCGTTTCCTTCTGGACTTCTCCACANGTTATGTATCGACCTT
JMFF001C15+ CTGGACTTCTCCACA-GTTATGTATCGACCTT
____________________________________________________________
consensus AGGTGTTGGAGTTCTAGGTCGTTTCCTTCTGGACTTCTCCACA-GTTATGTATCGACCTT
. : . : . : . : . : . :
JMFN028M24+ CAAGAACAGACTGATTGAGGTGCTTTACGCAGCGATTGGCATCATCAGC
rJMFF001C15- CAAGAACAGACTGATTGAGGTGCTTTACGCAGCGATTGGCATCATCAGCATTGTCCATTG
rJMSF001O15- CAAGAACAGACTGATTGAGGTGCTTTACGCAGCGATTGGCATCATCAGCATTGTCCATTG
JMFF034H01+ CAAGAACTGACTGATTGAGGTGCTTGACACAGCGACTGGCATCATCATCATTATCCATAG
JMFF012N23+ CAAGAACAGACTGATTGAGGTGCTTTACGCAGCGATTGGCATCATCAGCATTGTCCATTG
JMFF001C15+ CAAGAACAGACTGATTGAGGTGCTTTACGCAGCGATTGGCATCATCAGCATTGTCCATTG
____________________________________________________________
consensus CAAGAACAGACTGATTGAGGTGCTTTACGCAGCGATTGGCATCATCAGCATTGTCCATTG
. : . : . : . : . : . :
rJMFF001C15- TTACAAAAGCAAAACCACGAGAAACACGAGAACGTGG
rJMSF001O15- TTACAAAAGCAAAACCACGAGAAACACGAGAACGTGGCTCCACTACCAAAAATACTGATT
JMFF034H01+ TTACAAAAGCAAAACCACGAGAGATGCGAGACCGTGGCTCCACAACCAAAAACACTGATT
JMFF012N23+ TTACAAAAGCAAAACCACGAGAAACACGAGAACGTGGCTCCACTACCAAAAATACTGATT
JMFF001C15+ TTACAAAAGCAAAACCACGAGAAACACGAGAACGTGGCTCCACTACCAAAAATACTGATT
____________________________________________________________
consensus TTACAAAAGCAAAACCACGAGAAACACGAGAACGTGGCTCCACTACCAAAAATACTGATT
. : . : . : . : . : . :
rJMSF001O15- TTACCTTCCCTTCCTTAGAGAAGTGGTCTTCAAGGTCCCTTTCTGTGACCCTTGTAGATA
JMFF034H01+ TTACCTTTCCCTCCTTAGAGAAATGCTCTTCAAGATCCCTTTCTGTCACTCTAGTAGATA
JMFF012N23+ TTACCTTCCCTTCCTTAGAGAAGTGGTCTTCAAGGTCCCTTTCTGTGACCCTTGTAGATA
JMFF001C15+ TTACCTTCCCTTCCTTAGAGAAGTGGTCTTCAAGGTCCCTTTCTGTGACCCTTGTAGATA
____________________________________________________________
consensus TTACCTTCCCTTCCTTAGAGAAGTGGTCTTCAAGGTCCCTTTCTGTGACCCTTGTAGATA
. : . : . : . : . : . :
rJMSF001O15- AACCAGTCACATAGAGAGTATCTCCAGGATTA
JMFF034H01+ AACCAGTGACATAGAGTGTGTCTCCAGGATTA
JMFF012N23+ AACCAGTCACATAGAGAGTATCTCCAGGATTAGAAGGCGGGTCCCTGCCACGACCTCTGG
JMFF001C15+ AACCAGTCACATAGAGAGTATCTCCAGGATTAGAAGGCGGGTCCCTGCCACGACCTCTGG
____________________________________________________________
consensus AACCAGTCACATAGAGAGTATCTCCAGGATTAGAAGGCGGGTCCCTGCCACGACCTCTGG
. : . : . : . : . : . :
JMFF012N23+ ATGTGGACCTTCCCCTTGGTCTTGACAATGACCTAGACCTAGATCTTGATCTTGACCTTT
JMFF001C15+ ATGTGGACCTTCCCCTTGGTCTTGACAATGACCTAGACCTAGATCTTGATCTTGACCTTT
____________________________________________________________
consensus ATGTGGACCTTCCCCTTGGTCTTGACAATGACCTAGACCTAGATCTTGATCTTGACCTTT
. : . : . : . : . : . :
JMFF012N23+ CTTCCCAAGGGGAAGGAGAGCGTGAATGCCTTTTCCGAGGAGAGTCGGCCATTTCCGAGC
JMFF001C15+ CTTCCCAAGGGGAAGGAGAGCGTGAATGCCTTTTCCGAGGAGAGTCGGCCATTTCCGAGC
JMSF001O15+ GGAGAGCGTGAATNCTTTTTCCGAGGAGAGTCGGCCATTTCCGAGC
____________________________________________________________
consensus CTTCCCAAGGGGAAGGAGAGCGTGAATGCCTTTTCCGAGGAGAGTCGGCCATTTCCGAGC
. : . : . : . : . : . :
JMFF012N23+ AGAGAAAAGGGAAAGAAAACCCTAAACCGCGAGAGAGTTGCAGAAAAGGAGTCGGTACAC
JMFF001C15+ AGAGAAAAGGGAAAGAAAACCCTAAACCGCGAGAGAGTTGCAGAAAAGGAGTCGGTACAC
JMSF001O15+ AGAGAAAAGGGAAAGAAAACCCTAAACCGCGAGAGAGTTGCAGAAAAGGAGTCGGTACAC
____________________________________________________________
consensus AGAGAAAAGGGAAAGAAAACCCTAAACCGCGAGAGAGTTGCAGAAAAGGAGTCGGTACAC
. : . : . : . : . : . :
JMFF012N23+ CGGGGATCACCAAGACGGGAAGGGGGGCGGAGATGGAAGGAAGTTGTAGATAC
JMFF001C15+ CGGGGATCACCAAGACGGGAAGGGGGGCGGAGATGGAAGGAAGTTGTAGATAC
JMSF001O15+ CGGGGATCACCAAGACGGGAAGGGGGGCGGAGATGGAAGGAAGTTGTAGATACACACACC
____________________________________________________________
consensus CGGGGATCACCAAGACGGGAAGGGGGGCGGAGATGGAAGGAAGTTGTAGATACACACACC