Contig 003504:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF033A23Sequence554003504 (3)ref|XP_010658715.1|2e-64PREDICTED: BTB/POZ domain-containing protein POB1-like [Vitis vinifera]725006894 (3)emb|CAN63457.1|5e-113hypothetical protein VITISV_008241 [Vitis vinifera]
JMSF001L21Sequence289003504 (3)ref|XP_007040415.1|2e-10POZ/BTB containin G-protein 1 isoform 4 [Theobroma cacao] gb|EOY24916.1| POZ/BTB718006894 (3)emb|CAN63457.1|2e-114hypothetical protein VITISV_008241 [Vitis vinifera]
JMSF033H06Sequence354003504 (3)710006894 (3)emb|CAN63457.1|9e-114hypothetical protein VITISV_008241 [Vitis vinifera]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF033A23+                                                       TTGCTGCCAAGATTGG
                      ____________________________________________________________
consensus                                                         TTGCTGCCAAGATTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF033A23+           AGAACTAATGTGTATGGTTTTAACTCTAAGGACATTCGAACAGTCCATATTTGATGATGA
                      ____________________________________________________________
consensus             AGAACTAATGTGTATGGTTTTAACTCTAAGGACATTCGAACAGTCCATATTTGATGATGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF033A23+           GTCATTGCCCTCAGCAGCTTCCTCATCAGGGTGATCTGCCATATCTCCAGTGCCAGATGG
                      ____________________________________________________________
consensus             GTCATTGCCCTCAGCAGCTTCCTCATCAGGGTGATCTGCCATATCTCCAGTGCCAGATGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF033A23+           TGTTTCCTCGACCATTGCTACAGCTTCCTCATCTAGATTCTCATATACAGGGCCATCTTC
                      ____________________________________________________________
consensus             TGTTTCCTCGACCATTGCTACAGCTTCCTCATCTAGATTCTCATATACAGGGCCATCTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF033A23+           GGTATCCAACATGTTGCAGTTCAAGACCTGCTCCTCACAATGCGAGACGACATCCACAGC
                      ____________________________________________________________
consensus             GGTATCCAACATGTTGCAGTTCAAGACCTGCTCCTCACAATGCGAGACGACATCCACAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF033A23+           ATTCTCCTTCATGATTTCTTCTCGGCGGCGCTTGCGTTTGCGGGCCCAATCAACGATGCT
                      ____________________________________________________________
consensus             ATTCTCCTTCATGATTTCTTCTCGGCGGCGCTTGCGTTTGCGGGCCCAATCAACGATGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF033A23+           GCTGCAGCCCTCGCCGTCGGATTTGGAGTCCGGCAAGTCAGGCAGGACCTCAATCCTTAG
JMSF033H06+                 GCCCTNGCCGTCGGATTTGGAGTCCGGCAAGTCAGGCAGGACCTCAATCTTTAG
                      ____________________________________________________________
consensus             GCTGCAGCCCTCGCCGTCGGATTTGGAGTCCGGCAAGTCAGGCAGGACCTCAATCTTTAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF033A23+           GATCCGGTCGGAGAAATTGCTGTCGTTGAAGGCGAACGCGAAGTCGGATTCGGAGCCCGA
JMSF033H06+           GATCCGGTCGGAGAAATTGCNGTCGTTGAAGGCGAACGCGAAGTNGGATTNGGANCCCGA
JMSF001L21+                      AGAAATTGCTGTCGTTGAAGGCGAACGCGAAGTCGGATTCGGAGCCCGA
                      ____________________________________________________________
consensus             GATCCGGTCGGAGAAATTGCTGTCGTTGAAGGCGAACGCGAAGTCGGATTCGGAGCCCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF033A23+           CCCGTGGTGATCGGCAGGAGAGGAATCCGAGTCCATCACCGTGCGTGGATCAAAAAGGTC
JMSF033H06+           CCCGTGGTGATCGGCAGGAGAGGAATCCGAGTCCATCNCCGTGCGTGGATCNAAAAGGTC
JMSF001L21+           CCCGTGGTGATCGGCAGGAGAGGAATCCGAGTCCATCACCGTGCGTGGATCAAAAAGGTC
                      ____________________________________________________________
consensus             CCCGTGGTGATCGGCAGGAGAGGAATCCGAGTCCATCACCGTGCGTGGATCAAAAAGGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF033A23+           CACGTTCT                                                    
JMSF033H06+           CACGTTCTGGTTTTTCATATGAAGAAACCAAATCACCAAAAAAAAATAAAAAAATTATAA
JMSF001L21+           CACGTTCTGGTTTTTCATATGAAGAAACCAAATCACCAAAAAAAAATAAAAAAATTATAA
                      ____________________________________________________________
consensus             CACGTTCTGGTTTTTCATATGAAGAAACCAAATCACCAAAAAAAAATAAAAAAATTATAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033H06+           TTAAACANCGAANTATTGCAGGAAAAATTAAGGAAGAAGACGAAGAAGAATGGTTGGAGA
JMSF001L21+           TTAAACAACGAATTATTGCAGGAAAAATTAAGGAAGAAGACGAAGAAGAATGGTTGGAGA
                      ____________________________________________________________
consensus             TTAAACAACGAATTATTGCAGGAAAAATTAAGGAAGAAGACGAAGAAGAATGGTTGGAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033H06+           AGGTCCGGAGAGGATCAGTTGGGCAATATGTTTTGTTTTGTTCTGTGTATTTTCTGTAC 
JMSF001L21+           AGGTCCGGAGAGGATCAGTTGGGCAATATGTTTTGTTTTGTTCTGTGTATTTTCTGTACC
                      ____________________________________________________________
consensus             AGGTCCGGAGAGGATCAGTTGGGCAATATGTTTTGTTTTGTTCTGTGTATTTTCTGTACC