Contig 003502:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001K21Sequence251003502 (3)772014937emb|CAG29362.1|6e-36putative type II NAD(P)H dehydrogenase [Arabidopsis thaliana]
JMSF021F15Sequence675003502 (3)ref|XP_010547688.1|3e-58PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mito802014027 (2)ref|XP_009791312.1|1e-113PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mito
JMSF033B09Sequence692003502 (3)ref|XP_010547688.1|3e-65PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mito759014027 (2)ref|XP_009791312.1|3e-102PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mito

Alignment

This contig is upended


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JMSF033B09+                                                      ACCAGTCATATTCAATA
                      ____________________________________________________________
consensus                                                        ACCAGTCATATTCAATA
 
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JMSF033B09+           GCTAGGCCACTTTCAAGATGAACAGTTCCTCCAGGGCCAGTTGGTGCAGGCACATTTGTC
JMSF021F15+                            ATGAACAGTTCCTCCAGGGCCAGTTGGTGCAGGCACATTTGTC
                      ____________________________________________________________
consensus             GCTAGGCCACTTTCAAGATGAACAGTTCCTCCAGGGCCAGTTGGTGCAGGCACATTTGTC
 
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JMSF033B09+           AGCAAATGGTCACGTGGATATAGGCACTTGACCCTATCTTTGAAGAACTGCACGCTGGTG
JMSF021F15+           AGCAAATGGTCACGTGGATATAGGCACTTGACCCTATCTTTGAAGAACTGCACGCTGGTG
                      ____________________________________________________________
consensus             AGCAAATGGTCACGTGGATATAGGCACTTGACCCTATCTTTGAAGAACTGCACGCTGGTG
 
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JMSF033B09+           TTTGCAAGCAATTGAGAGAATAATGGTGCAATTTCCCACATGTCTACTTCCCCAGAAAGA
JMSF021F15+           TTTGCAAGCAATTGAGAGAATAATGGTGCAATTTCCCACATGTCTACTTCCCCAGAAAGA
                      ____________________________________________________________
consensus             TTTGCAAGCAATTGAGAGAATAATGGTGCAATTTCCCACATGTCTACTTCCCCAGAAAGA
 
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JMSF033B09+           AGTTCATATAACATGGGCTTAAAAACAAAGCGTTCAGATTGATCAACAAGGATGACCTGG
JMSF021F15+           AGTTCATATAACATGGGCTTAAAAACAAAGCGTTCAGATTGATCAACAAGGATGACCTGG
                      ____________________________________________________________
consensus             AGTTCATATAACATGGGCTTAAAAACAAAGCGTTCAGATTGATCAACAAGGATGACCTGG
 
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JMSF033B09+           GGCTTTTTGTCATCACTCCAAACAAGTGATTCCAATCTTAGTGCTGTGTAAAGTCCTCCA
JMSF021F15+           GGCTTTTTGTCATCACTCCAAACAAGTGATTCCAATCTTAGTGCTGTGTAAAGTCCTCCA
                      ____________________________________________________________
consensus             GGCTTTTTGTCATCACTCCAAACAAGTGATTCCAATCTTAGTGCTGTGTAAAGTCCTCCA
 
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JMSF033B09+           AATCCACCACCAAGTATGCATACCCTTGGCCTCTTGTTATCAGGCCATTTAAAGGTAACA
JMSF021F15+           AATCCACCACCAAGTATGCATACCCTTGGCCTCTTGTTATCAGGCCATTTAAAGGTAACA
                      ____________________________________________________________
consensus             AATCCACCACCAAGTATGCATACCCTTGGCCTCTTGTTATCAGGCCATTTAAAGGTAACA
 
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JMSF033B09+           GGTTTAGAACCGTCAATTCCATTTGCTTCCACAGTGCTCCCATTTCCCCGACCCGCATTG
JMSF021F15+           GGTTTAGAACCGTCAATTCCATTTGCTTCCACAGTGCTCCCATTTCCCCGACCCGCATTG
                      ____________________________________________________________
consensus             GGTTTAGAACCGTCAATTCCATTTGCTTCCACAGTGCTCCCATTTCCCCGACCCGCATTG
 
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JMSF033B09+           GCATTGACTCGGAATGACTCGCCCCGCACTGCGATGCTACCAGAAGAAGCAGAACTAATG
JMSF021F15+           GCATTGACTCGGAATGACTCGCCCCGCACTGCGATGCTACCAGAAGAAGCAGAACTAATG
JMSF001K21+                                                   CAGAAGAAGCAGAACTAATG
                      ____________________________________________________________
consensus             GCATTGACTCGGAATGACTCGCCCCGCACTGCGATGCTACCAGAAGAAGCAGAACTAATG
 
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JMSF033B09+           CTTTCACTCCGAATATTCTTACTCTTGCGACTGCTCCTAAATTGCATCAGAATCGAAGAT
JMSF021F15+           CTTTCACTCCAAATATTCTTACTCTTGCGACTGCTCCTAAATTGCATCAGAATCGAAGAT
JMSF001K21+           CTTTCACTCCGAATATTCTTACTCTTGCGACTGCTCCTAAATTGCATCAGAATCGAAGAT
                      ____________________________________________________________
consensus             CTTTCACTCCGAATATTCTTACTCTTGCGACTGCTCCTAAATTGCATCAGAATCGAAGAT
 
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JMSF033B09+           TGCGTCTTTGGAAATGTTCCTGAAATTGGAGTGTTGAAAGTGAACAGTCGTGTTGCTGTG
JMSF021F15+           TGCGTCTTTGGAAATGTTCCTGAAATTGGAGTGTTGAAAGTGAACAGTCGTGTTGCTGTG
JMSF001K21+           TGCGTCTTTGGAAATGTTC---------GAGTGTTGAAAGTGAACAGTCGTGTTGCTGTG
                      ____________________________________________________________
consensus             TGCGTCTTTGGAAATGTTCCTGAAATTGGAGTGTTGAAAGTGAACAGTCGTGTTGCTGTG
 
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JMSF033B09+           GCTGAAGCATAAGAGGAAGATCTCGCGACAGCAGCGTGGGATGCCATTACTGACTGACTG
JMSF021F15+           GCTGAAGCATAAGAGGAAGATCTCGCGACAGCAGCGTGGGATGCCATTACTGACTGACTG
JMSF001K21+           GCTGAAGCATAAGAGGAAGATCTCGCGACAGCAGCGTGGGATGCCATTACTGACTGACTG
                      ____________________________________________________________
consensus             GCTGAAGCATAAGAGGAAGATCTCGCGACAGCAGCGTGGGATGCCATTACTGACTGACTG
 
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JMSF033B09+           CTTCTCCAGTGAT                                               
JMSF021F15+           CTTCTCCAGTGATTAGGTGATGGCGGTAACT                             
JMSF001K21+           CTTCTCCAGTGATTAGGTGATGGCGGTAACTGGTAAGAGTAAGAGAAAGGCCCCAATTTC
                      ____________________________________________________________
consensus             CTTCTCCAGTGATTAGGTGATGGCGGTAACTGGTAAGAGTAAGAGAAAGGCCCCAATTTC