| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF016G21 | Sequence | 540 | 003501 (4) | ref|XP_009773987.1| | 2e-57 | PREDICTED: triose phosphate/phosphate translocator, non-green plastid, chloropl | 769 | 007673 (5) | gb|KDP31087.1| | 4e-89 | hypothetical protein JCGZ_11463 [Jatropha curcas] |
| JMSF001E18 | Sequence | 434 | 003501 (4) | ref|XP_009595321.1| | 2e-11 | PREDICTED: phosphoenolpyruvate/phosphate translocator 1, chloroplastic-like [Ni | 731 | 007673 (5) | gb|KDP31087.1| | 2e-84 | hypothetical protein JCGZ_11463 [Jatropha curcas] |
| JMSF033J24 | Sequence | 701 | 003501 (4) | ref|XP_009773987.1| | 3e-70 | PREDICTED: triose phosphate/phosphate translocator, non-green plastid, chloropl | 731 | 007673 (5) | gb|KDP31087.1| | 2e-78 | hypothetical protein JCGZ_11463 [Jatropha curcas] |
| JMSF051K22 | Sequence | 659 | 003501 (4) | ref|XP_009773987.1| | 2e-63 | PREDICTED: triose phosphate/phosphate translocator, non-green plastid, chloropl | 695 | 015192 | ref|XP_011071878.1| | 4e-34 | PREDICTED: phosphoenolpyruvate/phosphate translocator 1, chloroplastic-like [Se |
This contig is upended
. : . : . : . : . : . :
JMSF033J24+ CTGAGAGGACAACAGAGAAGAAGGGCTCCATAGCTTTAATTGTG
____________________________________________________________
consensus CTGAGAGGACAACAGAGAAGAAGGGCTCCATAGCTTTAATTGTG
. : . : . : . : . : . :
JMSF033J24+ TGAGTGAATGAAACAGCAACTTTTCCGAGACTCATATTGGTAAACAGGTTGCNTAAGGTA
JMSF051K22+ GAGTGAATGAAACAGCAACTTTTCCGAGACTCATATTGGTAAACAGGTTGCNTAAGGTA
____________________________________________________________
consensus TGAGTGAATGAAACAGCAACTTTTCCGAGACTCATATTGGTAAACAGGTTGCNTAAGGTA
. : . : . : . : . : . :
JMSF033J24+ TGTACCACAGCCAATGGCAGGATTGCTGCAAGCTGTGCACCGCTGATTTTAGGTCGTTTG
JMFF016G21+ TG
JMSF051K22+ TGTACCACAGCCAATGGCAGGATTGCTGCAAGCTGTGCACCGCTGATTTTAGGTCGTTTG
____________________________________________________________
consensus TGTACCACAGCCAATGGCAGGATTGCTGCAAGCTGTGCACCGCTGATTTTAGGTCGTTTG
. : . : . : . : . : . :
JMSF033J24+ TAAAGATTTAATGTCCACATGAGAGTAACAAGGACTGAACCAACAGCAAATTGAACAAGA
JMFF016G21+ TAAAGATTTAATGTCCACATGAGAGTAACAAGGACTGAACCAACAGCAAATTGAACAAGA
JMSF051K22+ TAAAGATTTAATGTCCACATGAGAGTAACAAGGACTGAACCAACAGCAAATTGAACAAGA
____________________________________________________________
consensus TAAAGATTTAATGTCCACATGAGAGTAACAAGGACTGAACCAACAGCAAATTGAACAAGA
. : . : . : . : . : . :
JMSF033J24+ GTAACTGTTACCGGGTAATGGAAGGCTTTAAGAACCTGCTTATTGTAGATATTGAAGTAG
JMFF016G21+ GTAACTGTTACCGGGTAATGGAAGGCTTTAAGAACCTGCTTATTGTAGATATTGAAGTAG
JMSF051K22+ GTAACTGTTACCGGGTAATGGAAGGCTTTAAGAACCTGCTTATTGTAGATATTGAAGTAG
JMSF001E18+ GTAGATATTGAAGTAG
____________________________________________________________
consensus GTAACTGTTACCGGGTAATGGAAGGCTTTAAGAACCTGCTTATTGTAGATATTGAAGTAG
. : . : . : . : . : . :
JMSF033J24+ ATGTTAAACAGGTA-CCAGAGCCCGAAGAGCAATCCAAGAACGAGCGTGTCACCCAACTT
JMFF016G21+ ATGTTAAACAGGTA-CCAGAGCCCGAAGTGCAATCCAAGAACGAGCGTGTCACCCAACTT
JMSF051K22+ ATGTTAAACAGGTACCCAGAGCCCGAAGAGCAATCCAAGAACGAGCGTGTCACCCAACTT
JMSF001E18+ ATGTTAAACAGGTA-CCAGAGCCCGAAGAGCAATCCAAGAACGAGCGTGTCACCCAACTT
____________________________________________________________
consensus ATGTTAAACAGGTA-CCAGAGCCCGAAGAGCAATCCAAGAACGAGCGTGTCACCCAACTT
. : . : . : . : . : . :
JMSF033J24+ CTTAGACTGCGAGGCCTCTCNGGCGCTCTCGGGCACAGACGCGGCCCGAACCTCAACTCC
JMFF016G21+ CTTAGACTGCGAGGCCTCTCCGGCGCTCTCGGGCACAGACGCGGCCCGAACCTCAACTCC
JMSF051K22+ CTTAGACTGCGAGGCCTCTCCGGCGCTCTCGGGCACAGACGCGGCCCGAACCTCAACTCC
JMSF001E18+ CTTAGACTGCGAGGCCTCTCCGGCGCTCTCGGG-ACAGACGCGGCCCGAACCTCAACTCC
____________________________________________________________
consensus CTTAGACTGCGAGGCCTCTCCGGCGCTCTCGGGCACAGACGCGGCCCGAACCTCAACTCC
. : . : . : . : . : . :
JMSF033J24+ ACCCGATTCGCGTTCGGTAGCGTGCAGCGGGGTGGAAATCCACCCGTCTAGGTTCAGTTT
JMFF016G21+ ACCCGATTCGCGTTCGGCAGCGTGCAGCGGGGTGGAAATCCACCCGTCTAGGTTCAGTTT
JMSF051K22+ ACCCGATTCGCGTTCGGTAGCGTGCAGCGGGGTGGAAATCCACCCGTCTAGGTTCAGTTT
JMSF001E18+ ACCCGATTCGCGTTCGGTAGCGTGCAGCGGGGTGGAAATCCACCCGTCTAGGTTCAGTTT
____________________________________________________________
consensus ACCCGATTCGCGTTCGGTAGCGTGCAGCGGGGTGGAAATCCACCCGTCTAGGTTCAGTTT
. : . : . : . : . : . :
JMSF033J24+ CGGGGCGGAGGAGCTGGAATCCGAAGAGCAGCGGATCGAGCCAAGCTTCCTTGCTCCGGC
JMFF016G21+ CGGGGCGGAGGAGCTGGAATCCGAAGAGCAGCGGATCGAGCCAAGCTTCCTTGCTCCGGC
JMSF051K22+ CGGGGCGGAGGAGCTGGAATCCGAAGAGCAGCGGATCGAGCCAAGCTTCCTTGCTCCGGC
JMSF001E18+ CGGGGCGGAGGAGCTGGAATCCGAAGAGCAGCGGATCGAGCCAAGCTTCCTTGCTCCGGC
____________________________________________________________
consensus CGGGGCGGAGGAGCTGGAATCCGAAGAGCAGCGGATCGAGCCAAGCTTCCTTGCTCCGGC
. : . : . : . : . : . :
JMSF033J24+ GGCGCTATTGGCGGAGGCGAGACGCAGCTGAAGCGGCGCCGGACGCGAAGGCGAGAGAGA
JMFF016G21+ GGCGCTATTGGCGGAGGCGAGACGCAGCTGAAGCGGCGCCGGACGCGAAGGCGAGAGAGA
JMSF051K22+ GGCGCTATTGGCGGAGGCGAGACGCAGCTGAAGCGGCGCCGGACGCGAAGGCGAGAGAGA
JMSF001E18+ GGCGCTATTGGCGGAGGCGAGACGCAGCTGAAGCGGCGCCGGACGCGAAGGCGAGAGAGA
____________________________________________________________
consensus GGCGCTATTGGCGGAGGCGAGACGCAGCTGAAGCGGCGCCGGACGCGAAGGCGAGAGAGA
. : . : . : . : . : . :
JMSF033J24+ AATAGGATTGAAGCGGTAGATGGATGAGGCGGCGGCATGCTTTCTAGGAGCCGAAATCGG
JMFF016G21+ AATAGGATTGAAGCGGTAGATGGATGAGGCGGCGGCATGCTTTCTAGGAGCCGAAATCGG
JMSF051K22+ AATAGGATTGAAGCGGTAGATGGATGAGGCGGCGGCATGCTTTCTAGGAGCCGAAATCGG
JMSF001E18+ AATAGGATTGAAGCGGTAGATGGATGAGGCGGCGGCATGCTTTCTAGGAGCCGAAATCGG
____________________________________________________________
consensus AATAGGATTGAAGCGGTAGATGGATGAGGCGGCGGCATGCTTTCTAGGAGCCGAAATCGG
. : . : . : . : . : . :
JMSF033J24+ CGAAGAAAACGAGATTGCCGAGCTCTGCATTTTCGCGATTTTCAGATGGCGGAAACT
JMFF016G21+ CGAAGAAAACGAGATTGCCGAGCTCTGCATTTTCGCGATTTTCAGATGGCGGAAACT
JMSF051K22+ CGAAGAAAACGAGATTGCCGAGCTCTGCATTTTCGCGATTTTCAGATGGCGGAAACT
JMSF001E18+ CGAAGAAAACGAGATTGCCGAGCTCTGCATTTTCGCGATTTTCAGATGGCGGAAACTGCC
____________________________________________________________
consensus CGAAGAAAACGAGATTGCCGAGCTCTGCATTTTCGCGATTTTCAGATGGCGGAAACTGCC