Contig 003500:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010M22Sequence549003500 (4)ref|XP_009757642.1|2e-08PREDICTED: transcription factor bHLH130-like [Nicotiana sylvestris]643003968 (5)emb|CDP07732.1|4e-62unnamed protein product [Coffea canephora]
JMSF001D20Sequence357003500 (4)772003968 (5)ref|XP_004229606.1|1e-62PREDICTED: transcription factor bHLH130-like [Solanum lycopersicum]
JMSF006I18Sequence412003500 (4)ref|XP_009757642.1|1e-09PREDICTED: transcription factor bHLH130-like [Nicotiana sylvestris]121003968 (5)ref|XP_009757642.1|6e-05PREDICTED: transcription factor bHLH130-like [Nicotiana sylvestris]
JMSF014G20Sequence239003500 (4)705003968 (5)ref|XP_004229606.1|1e-68PREDICTED: transcription factor bHLH130-like [Solanum lycopersicum]

Alignment

This contig is upended


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JMFF010M22+                                                             TCCGCCGCCA
                      ____________________________________________________________
consensus                                                               TCCGCCGCCA
 
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JMFF010M22+           TCTCCGGCTTCAGAAACTGCACAGAATTCTTCAGATCGCGCGAGTCGCAATTCAGGATGG
                      ____________________________________________________________
consensus             TCTCCGGCTTCAGAAACTGCACAGAATTCTTCAGATCGCGCGAGTCGCAATTCAGGATGG
 
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JMFF010M22+           ACGAGAACATGGTCTCCGAGTCGGAGCTGGAGGAGCCGTCGTTCACCATGAAGCTGTCCG
                      ____________________________________________________________
consensus             ACGAGAACATGGTCTCCGAGTCGGAGCTGGAGGAGCCGTCGTTCACCATGAAGCTGTCCG
 
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JMFF010M22+           CAGCGTCGTTCGCGGCGGCGGCGGCGGCGCTGTCCATGATGCCGGCGAAGAAGGAGCTCG
JMSF006I18+                   TTCGCGGCGGCGGCGGCGGCGCTGTCCATGATGCCGGCGAAGAAGGAGCTCG
                      ____________________________________________________________
consensus             CAGCGTCGTTCGCGGCGGCGGCGGCGGCGCTGTCCATGATGCCGGCGAAGAAGGAGCTCG
 
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JMFF010M22+           GAGCTGAGCGGTATCGCATCAGCCCGCCGCCGCTGCTGCTCTGCTGCTGATAAAGATCCG
JMSF006I18+           GAGCTGAGCGGTATCGCATCAGCCCGCCGCCGCTGCTGCTCTGCTGCTGATAAAGATCCG
JMSF001D20+              CTGAGCGGTATCGCATCAGCCCGCCGCCGCTGCTGCTCTGCTGCTGATAAAGATCCG
                      ____________________________________________________________
consensus             GAGCTGAGCGGTATCGCATCAGCCCGCCGCCGCTGCTGCTCTGCTGCTGATAAAGATCCG
 
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JMFF010M22+           AACCCATCACTTCTTTGCTCTTCAGGAACTCATTACTCTGCATATCATTCTTGTAACCGG
JMSF006I18+           AACCCATCACTTCTTTGCTCTTCAGGAACTCATTACTCTGCATATCATTCTTGTAACCGG
JMSF001D20+           AACCCATCACTTCTTTGCTCTTCAGGAACTCATTACTCTGCATATCATTCTTGTAACCGG
                      ____________________________________________________________
consensus             AACCCATCACTTCTTTGCTCTTCAGGAACTCATTACTCTGCATATCATTCTTGTAACCGG
 
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JMFF010M22+           AATTAGCAGGCGGGAACAAGAAGCTGCTGGCGCTCCCACCGGTCAACTCTCTGGAAATCG
JMSF014G20+            ATTAGCAGGCGGGAACAAGAAGCTGCTGGCGCTCCCACCGGTCAACTCTCTGGAAATCG
JMSF006I18+           AATTAGCAGGCGGGAACAAGAAGCTGCTGGCGCTCCCACCGGTCAACTCTCTGGAAATCG
JMSF001D20+           AATTAGCAGGCGGGAACAAGAAGCTGCTGGCGCTCCCACCGGTCAACTCTCTGGAAATCG
                      ____________________________________________________________
consensus             AATTAGCAGGCGGGAACAAGAAGCTGCTGGCGCTCCCACCGGTCAACTCTCTGGAAATCG
 
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JMFF010M22+           GAGCTTCTGAGCTAAACATGGGCGCAGTTTTTTCAAGAATCGTGGAAGAAATCTGAGGAA
JMSF014G20+           GAGCTTCTGAGCTAAACATGGGCGCAGTTTTTTCAAGAATCGTGGAAGAAATCTGAGGAA
JMSF006I18+           GAGCTTCTGAGCTAAACATGGGCGCAGTTTTTTCAAGAATCGTGGAAGAAATCTGAGGAA
JMSF001D20+           GAGCTTCTGAGCTAAACATGGGCGCAGTTTTTTCAAGAATCGTGGAAGAAATCTGAGGAA
                      ____________________________________________________________
consensus             GAGCTTCTGAGCTAAACATGGGCGCAGTTTTTTCAAGAATCGTGGAAGAAATCTGAGGAA
 
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JMFF010M22+           AGGGGGAGAGGATTTATGGGTCTGAACCAAAAACGATACAAGGTTATGGAATTGGCTCAA
JMSF014G20+           AGGGGGAGAGGATTTATGGGTCTGAACCAAAAACGATACAAGGTTATGGAATTGGCTCAA
JMSF006I18+           AGGGGGAGAGGATTTATGGGTCTGAACCAAAAACGATACAAGGTTATGGAATTGGCTCAA
JMSF001D20+           AGGGGGAGAGGATTTATGGGTCTGAACCAAAAACGATACAAGGTTATGGAATTGGCTCAA
                      ____________________________________________________________
consensus             AGGGGGAGAGGATTTATGGGTCTGAACCAAAAACGATACAAGGTTATGGAATTGGCTCAA
 
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JMFF010M22+           ATCCGCATAGATTTCTGGGAAGAAAAACCAGGAATGGCATGTGAGACAGAAAGCGAT   
JMSF014G20+           ATCCGCATAGATTTCTGGGAAGAAAAACCAGGAATGGCATGTGAGACAGAAAGCGAT   
JMSF006I18+           ATCCGCATAGATTTCTGGGAAGAAAAACCAGGAATGGCATGTGAGACAGAAAGCGAT   
JMSF001D20+           ATCCGCATAGATTTCTGGGAAGAAAAACCAGGAATGGCATGTGAGACAGAAAGCGATTTC
                      ____________________________________________________________
consensus             ATCCGCATAGATTTCTGGGAAGAAAAACCAGGAATGGCATGTGAGACAGAAAGCGATTTC