clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF003A03 | Sequence | 603 | 003493 (5) | ref|XP_009609663.1| | 3e-37 | PREDICTED: RNA-dependent RNA polymerase 6, partial [Nicotiana tomentosiformis] | 765 | 013595 (3) | emb|CDP13507.1| | 1e-88 | unnamed protein product [Coffea canephora] |
JMFS039F04 | Sequence | 621 | 003493 (5) | ref|XP_009609663.1| | 4e-30 | PREDICTED: RNA-dependent RNA polymerase 6, partial [Nicotiana tomentosiformis] | |||||
JMFS100D10 | Sequence | 627 | 003493 (5) | ref|XP_009609663.1| | 5e-97 | PREDICTED: RNA-dependent RNA polymerase 6, partial [Nicotiana tomentosiformis] | |||||
JMFS166B07 | Sequence | 561 | 003493 (5) | ref|NP_001266205.1| | 5e-17 | RNA-dependent RNA polymerase 6 [Solanum lycopersicum] gb|AFO53516.1| RNA-depende | |||||
JMSF048M05 | Sequence | 661 | 003493 (5) | ref|XP_009609663.1| | 2e-46 | PREDICTED: RNA-dependent RNA polymerase 6, partial [Nicotiana tomentosiformis] | 722 | 013595 (3) | emb|CDP13507.1| | 3e-85 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
JMFS100D10+ CATCATCCAGCAACTCAAATGGAACTAGATCTTCAATATCATCATCAGCTGTT
____________________________________________________________
consensus CATCATCCAGCAACTCAAATGGAACTAGATCTTCAATATCATCATCAGCTGTT
. : . : . : . : . : . :
JMFS100D10+ CTATAATAAACAAGAGGAGATGAAGCCAGCTGCAACAAGATCACTAAAGAGAACGAATCC
____________________________________________________________
consensus CTATAATAAACAAGAGGAGATGAAGCCAGCTGCAACAAGATCACTAAAGAGAACGAATCC
. : . : . : . : . : . :
JMFS100D10+ TCGTACTTTTCTATTTTGTTGATTTCTTTCAGTGTGAACTCCATCTTAAAATCACATTTT
____________________________________________________________
consensus TCGTACTTTTCTATTTTGTTGATTTCTTTCAGTGTGAACTCCATCTTAAAATCACATTTT
. : . : . : . : . : . :
JMFS100D10+ ATGACCACATGTTTCGCTCCATCAGGGGCGTTAAAAGCGGTATCTTTCGTGAAAAGTAGC
____________________________________________________________
consensus ATGACCACATGTTTCGCTCCATCAGGGGCGTTAAAAGCGGTATCTTTCGTGAAAAGTAGC
. : . : . : . : . : . :
JMFS100D10+ CGGCATGTAGCATTGAAAGGATCCACAAGAAAATCAACCCCCTTCGGAGGTCCCCTCCAA
____________________________________________________________
consensus CGGCATGTAGCATTGAAAGGATCCACAAGAAAATCAACCCCCTTCGGAGGTCCCCTCCAA
. : . : . : . : . : . :
JMFS100D10+ CACACAACAAAGTCATCACGACTTGCCATAACTCCCATCTCAACACGAACATGTTCGAGC
____________________________________________________________
consensus CACACAACAAAGTCATCACGACTTGCCATAACTCCCATCTCAACACGAACATGTTCGAGC
. : . : . : . : . : . :
JMFS100D10+ CTGAATGGCATTACAGTTCTCCTAATCTCATTCATGCGATGAGGATTCTTGGGCCCCAAA
JMSF048M05+ TAATCTCATTCATGCGATGAGGATTCTTGGGCCCCAAA
____________________________________________________________
consensus CTGAATGGCATTACAGTTCTCCTAATCTCATTCATGCGATGAGGATTCTTGGGCCCCAAA
. : . : . : . : . : . :
JMFS100D10+ CTGACTTTCAAAGGGTTCCCCGCCAATACGAGCTCATTGCGCCCCGCAGCAGCCAGAGCA
JMSF048M05+ CTGACTTTCAAAGGGTTCCCCGCCAATACGAGCTCATTGCGCCCCGCAGCAGCCAGAGCA
JMFF003A03+ CCAATACGAGCTCATTGCGCCCCGCAGCAGCCAGAGCA
____________________________________________________________
consensus CTGACTTTCAAAGGGTTCCCCGCCAATACGAGCTCATTGCGCCCCGCAGCAGCCAGAGCA
. : . : . : . : . : . :
JMFS100D10+ AAGATTGCTGTACTTGGCATCATAAAATGTACAAATGCGTGTGGTACCACTTTCTCATAG
JMSF048M05+ AAGATTGCTGTACTTGGCATCATAAAATGTACAAATGCGTGTGGTACCACTTTCTCATAG
JMFF003A03+ AAGATTGCTGTACTTGGCATCATAAAATGTACAAATGCGTGTGGTACCACTTTCTCATAG
JMFS039F04+ TGGCATCATAAAATGTACAAATGCGTGTGGTACCACTTTCTCATAG
____________________________________________________________
consensus AAGATTGCTGTACTTGGCATCATAAAATGTACAAATGCGTGTGGTACCACTTTCTCATAG
. : . : . : . : . : . :
JMFS100D10+ TCATTCCTCCTTCTCACATTCTGAGGATCTACCTCATAATTCGGGTAAGTATCAAAAGGA
JMSF048M05+ TCATTCCTCCTTCTCACATTCTGAGGATCTACCTCATAATTCGGGTAAGTATCAAAAGGA
JMFF003A03+ TCATTCCTCCTTCTCACATTCTGAGGATCTACCTCATAATTCGGGTAAGTATCAAAAGGA
JMFS039F04+ TCATTCNTCCTTCTCACATTCTGAGGATCTACCTCATAATTCGGGTAAGTATCAAAAGGA
JMFS166B07+ ATTCGGGTAAGTATCAAAAGGA
____________________________________________________________
consensus TCATTCCTCCTTCTCACATTCTGAGGATCTACCTCATAATTCGGGTAAGTATCAAAAGGA
. : . : . : . : . : . :
JMFS100D10+ GTCGAAGAAGTCTTCAATCTACATCTCCAGATGT
JMSF048M05+ GTCGAAGAAGTCTTCAATCTACATCTCCAGATGTGTCCAACTTTTTCGTCAAAATAATCA
JMFF003A03+ GTCGAAGAAGTCTTCAATCTACATCTCCAGATGTGTCCAACTTTTTCGTCAAAATAATCA
JMFS039F04+ GTCGAAGAAGTCTTCAATCTACATCTCCAGATGTGTCCAACTTTTTCGTCAAAATAATCA
JMFS166B07+ GTCGAAGAAGTCTTCAATCTACATCTCCAGATGTGTCCAACTTTTTCGTCAAAATAATCA
____________________________________________________________
consensus GTCGAAGAAGTCTTCAATCTACATCTCCAGATGTGTCCAACTTTTTCGTCAAAATAATCA
. : . : . : . : . : . :
JMSF048M05+ GAAAGACACTTTGCATTTACATCATTGCCAAATCCACCAACACTAATTTGAGTAACAATC
JMFF003A03+ GAAAGACACTTTGCATTTACATCATTGCCAAATCCACCAACACTAATTTGAGTAACAATC
JMFS039F04+ GAAAGACACTTTGCATTTACATCATTGCCAAATCCACCAACACTAATTTGAGTAACAATC
JMFS166B07+ GAAAGACACTTTGCATTTACATCATTGCCAAATCCACCAACACTAATTTGAGTAACAATC
____________________________________________________________
consensus GAAAGACACTTTGCATTTACATCATTGCCAAATCCACCAACACTAATTTGAGTAACAATC
. : . : . : . : . : . :
JMSF048M05+ ATACTCATATCCTCATCACTCCAGTCAGACCCCATTTTTATTTGAAATACTCCTCCTACC
JMFF003A03+ ATACTCATATCCTCATCACTCCAGTCAGACCCCATTTTTATTTGAAATACTCCTCCTACC
JMFS039F04+ ATACTCATATCCTCATCACTCCAGTCAGACCCCATTTTTATTTGAAATACTCCTCCTACC
JMFS166B07+ ATACTCATATCCTCATCACTCCAGTCAGACCCCATTTTTATTTGAAATACTCCTCCTACC
____________________________________________________________
consensus ATACTCATATCCTCATCACTCCAGTCAGACCCCATTTTTATTTGAAATACTCCTCCTACC
. : . : . : . : . : . :
JMSF048M05+ TTTGTTCAACAATTACTATGTGTACCTCACTTACTCACTCACTCACTCCCTTCCGTCGCG
JMFF003A03+ TTTGTTCAACAATTACTATGTGTACCTCACTTACTCACTCACTCACTCCCTTCCGTCGCG
JMFS039F04+ TTTGTTCAACAATTACTATGTGTACCTCACTTACTCACTCACTCACTCCCTTCCGTCGCG
JMFS166B07+ TTTGTTCAACAATTACTATGTGTACCTCACTTACTCACTCACTCACTCCCTTCCGTCGCG
____________________________________________________________
consensus TTTGTTCAACAATTACTATGTGTACCTCACTTACTCACTCACTCACTCCCTTCCGTCGCG
. : . : . : . : . : . :
JMSF048M05+ GACTAGCAGCACATTTCCGATTCGCCTCTCGCCGGC-GCAGTAGCTTCGAACTTCGAGGC
JMFF003A03+ GACTAGCAGCACATTTCCGATTCGCCTCTCGCCGGC-GCAGTAGCTTCGAACTTCGAGGC
JMFS039F04+ GACTAGCAGCACATTTCCGATTCGCCTCTCGCCGGCTGCAGTAGCTTCGAACTTCGAGGC
JMFS166B07+ GACTAGCAGCACATTTCCGATTCGCCTCTCGCCGGC-GCAGTAGCTTCGAACTTCGAGGC
____________________________________________________________
consensus GACTAGCAGCACATTTCCGATTCGCCTCTCGCCGGC-GCAGTAGCTTCGAACTTCGAGGC
. : . : . : . : . : . :
JMSF048M05+ CATCAAGCCGGTCGATCGCCGGTAGCAGAGCGGCTTCGAACTTGTCTTGGAGCTTCCGTC
JMFF003A03+ CATCAAGCCGGTCGATCGCCGGTAGCAGAGCGGCTTCGAACTTGTCTTGGAGCTTCCGTC
JMFS039F04+ CATCAAGCCGGTCGATCGCCGGTAGCAGAGCGGCTTCGAACTTGTCTTGGAGCTTCCGTC
JMFS166B07+ CATCAAGCCGGTCGATCGCCGGTAGCAGAGCGGCTTCGAACTTGTCTTGGAGCTTCCGTC
____________________________________________________________
consensus CATCAAGCCGGTCGATCGCCGGTAGCAGAGCGGCTTCGAACTTGTCTTGGAGCTTCCGTC
. : . : . : . : . : . :
JMSF048M05+ GTCGTTGTCTCTTCCAATTACTACTGCACCTCGTCGTCCCACCCGAGCCAATAAATCAAT
JMFF003A03+ GTCGTTGTCTCTTCCAATTACTACTGCACCTCGTCGTCCCACCCGAGCCAATAAATCAAT
JMFS039F04+ GTCGTTGTCTCTTCCAATTACTACTGCACCTCGTCGTCCCACCCGAGCCAATAAATCAAT
JMFS166B07+ GTCGTTGTCTCTTCCAATTACTACTGCACCTCGTCGTCCCACCCGAGCCAATAAATCAAT
____________________________________________________________
consensus GTCGTTGTCTCTTCCAATTACTACTGCACCTCGTCGTCCCACCCGAGCCAATAAATCAAT
. : . : . : . : . : . :
JMSF048M05+ CGGAGCGAAGCCAAGACTCCAAC
JMFF003A03+ CGGAGCGAAGCCAAGACTCCAAC
JMFS039F04+ CGGAGCGAAGCCAAGACTCCAACAATGTCATGCCTGAGAAGAAAGATCGAAGCTTTAAAC
JMFS166B07+ CGGAGCGAAGCCAAGACTCCAACAATGTCATGCCTGAGAAGAAAGATCGAAGCTTTAAAC
____________________________________________________________
consensus CGGAGCGAAGCCAAGACTCCAACAATGTCATGCCTGAGAAGAAAGATCGAAGCTTTAAAC
. : . : . : . : . : . :
JMFS039F04+ ACGAAATTGCATCCAAGAAGACAAGAA
JMFS166B07+ ACGAAATTGCATCCAAGAAGACAAGAACAGTGGGAGTGAACTGGCAAGTGGGAAGTGGGC
____________________________________________________________
consensus ACGAAATTGCATCCAAGAAGACAAGAACAGTGGGAGTGAACTGGCAAGTGGGAAGTGGGC