Contig 003493:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003A03Sequence603003493 (5)ref|XP_009609663.1|3e-37PREDICTED: RNA-dependent RNA polymerase 6, partial [Nicotiana tomentosiformis]765013595 (3)emb|CDP13507.1|1e-88unnamed protein product [Coffea canephora]
JMFS039F04Sequence621003493 (5)ref|XP_009609663.1|4e-30PREDICTED: RNA-dependent RNA polymerase 6, partial [Nicotiana tomentosiformis]
JMFS100D10Sequence627003493 (5)ref|XP_009609663.1|5e-97PREDICTED: RNA-dependent RNA polymerase 6, partial [Nicotiana tomentosiformis]
JMFS166B07Sequence561003493 (5)ref|NP_001266205.1|5e-17RNA-dependent RNA polymerase 6 [Solanum lycopersicum] gb|AFO53516.1| RNA-depende
JMSF048M05Sequence661003493 (5)ref|XP_009609663.1|2e-46PREDICTED: RNA-dependent RNA polymerase 6, partial [Nicotiana tomentosiformis]722013595 (3)emb|CDP13507.1|3e-85unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS100D10+ CATCATCCAGCAACTCAAATGGAACTAGATCTTCAATATCATCATCAGCTGTT
                      ____________________________________________________________
consensus CATCATCCAGCAACTCAAATGGAACTAGATCTTCAATATCATCATCAGCTGTT
 
. : . : . : . : . : . :
JMFS100D10+ CTATAATAAACAAGAGGAGATGAAGCCAGCTGCAACAAGATCACTAAAGAGAACGAATCC
                      ____________________________________________________________
consensus CTATAATAAACAAGAGGAGATGAAGCCAGCTGCAACAAGATCACTAAAGAGAACGAATCC
 
. : . : . : . : . : . :
JMFS100D10+ TCGTACTTTTCTATTTTGTTGATTTCTTTCAGTGTGAACTCCATCTTAAAATCACATTTT
                      ____________________________________________________________
consensus TCGTACTTTTCTATTTTGTTGATTTCTTTCAGTGTGAACTCCATCTTAAAATCACATTTT
 
. : . : . : . : . : . :
JMFS100D10+ ATGACCACATGTTTCGCTCCATCAGGGGCGTTAAAAGCGGTATCTTTCGTGAAAAGTAGC
                      ____________________________________________________________
consensus ATGACCACATGTTTCGCTCCATCAGGGGCGTTAAAAGCGGTATCTTTCGTGAAAAGTAGC
 
. : . : . : . : . : . :
JMFS100D10+ CGGCATGTAGCATTGAAAGGATCCACAAGAAAATCAACCCCCTTCGGAGGTCCCCTCCAA
                      ____________________________________________________________
consensus CGGCATGTAGCATTGAAAGGATCCACAAGAAAATCAACCCCCTTCGGAGGTCCCCTCCAA
 
. : . : . : . : . : . :
JMFS100D10+ CACACAACAAAGTCATCACGACTTGCCATAACTCCCATCTCAACACGAACATGTTCGAGC
                      ____________________________________________________________
consensus CACACAACAAAGTCATCACGACTTGCCATAACTCCCATCTCAACACGAACATGTTCGAGC
 
. : . : . : . : . : . :
JMFS100D10+ CTGAATGGCATTACAGTTCTCCTAATCTCATTCATGCGATGAGGATTCTTGGGCCCCAAA
JMSF048M05+ TAATCTCATTCATGCGATGAGGATTCTTGGGCCCCAAA
                      ____________________________________________________________
consensus CTGAATGGCATTACAGTTCTCCTAATCTCATTCATGCGATGAGGATTCTTGGGCCCCAAA
 
. : . : . : . : . : . :
JMFS100D10+ CTGACTTTCAAAGGGTTCCCCGCCAATACGAGCTCATTGCGCCCCGCAGCAGCCAGAGCA
JMSF048M05+ CTGACTTTCAAAGGGTTCCCCGCCAATACGAGCTCATTGCGCCCCGCAGCAGCCAGAGCA
JMFF003A03+ CCAATACGAGCTCATTGCGCCCCGCAGCAGCCAGAGCA
                      ____________________________________________________________
consensus CTGACTTTCAAAGGGTTCCCCGCCAATACGAGCTCATTGCGCCCCGCAGCAGCCAGAGCA
 
. : . : . : . : . : . :
JMFS100D10+ AAGATTGCTGTACTTGGCATCATAAAATGTACAAATGCGTGTGGTACCACTTTCTCATAG
JMSF048M05+ AAGATTGCTGTACTTGGCATCATAAAATGTACAAATGCGTGTGGTACCACTTTCTCATAG
JMFF003A03+ AAGATTGCTGTACTTGGCATCATAAAATGTACAAATGCGTGTGGTACCACTTTCTCATAG
JMFS039F04+ TGGCATCATAAAATGTACAAATGCGTGTGGTACCACTTTCTCATAG
                      ____________________________________________________________
consensus AAGATTGCTGTACTTGGCATCATAAAATGTACAAATGCGTGTGGTACCACTTTCTCATAG
 
. : . : . : . : . : . :
JMFS100D10+ TCATTCCTCCTTCTCACATTCTGAGGATCTACCTCATAATTCGGGTAAGTATCAAAAGGA
JMSF048M05+ TCATTCCTCCTTCTCACATTCTGAGGATCTACCTCATAATTCGGGTAAGTATCAAAAGGA
JMFF003A03+ TCATTCCTCCTTCTCACATTCTGAGGATCTACCTCATAATTCGGGTAAGTATCAAAAGGA
JMFS039F04+ TCATTCNTCCTTCTCACATTCTGAGGATCTACCTCATAATTCGGGTAAGTATCAAAAGGA
JMFS166B07+ ATTCGGGTAAGTATCAAAAGGA
                      ____________________________________________________________
consensus TCATTCCTCCTTCTCACATTCTGAGGATCTACCTCATAATTCGGGTAAGTATCAAAAGGA
 
. : . : . : . : . : . :
JMFS100D10+ GTCGAAGAAGTCTTCAATCTACATCTCCAGATGT
JMSF048M05+ GTCGAAGAAGTCTTCAATCTACATCTCCAGATGTGTCCAACTTTTTCGTCAAAATAATCA
JMFF003A03+ GTCGAAGAAGTCTTCAATCTACATCTCCAGATGTGTCCAACTTTTTCGTCAAAATAATCA
JMFS039F04+ GTCGAAGAAGTCTTCAATCTACATCTCCAGATGTGTCCAACTTTTTCGTCAAAATAATCA
JMFS166B07+ GTCGAAGAAGTCTTCAATCTACATCTCCAGATGTGTCCAACTTTTTCGTCAAAATAATCA
                      ____________________________________________________________
consensus GTCGAAGAAGTCTTCAATCTACATCTCCAGATGTGTCCAACTTTTTCGTCAAAATAATCA
 
. : . : . : . : . : . :
JMSF048M05+ GAAAGACACTTTGCATTTACATCATTGCCAAATCCACCAACACTAATTTGAGTAACAATC
JMFF003A03+ GAAAGACACTTTGCATTTACATCATTGCCAAATCCACCAACACTAATTTGAGTAACAATC
JMFS039F04+ GAAAGACACTTTGCATTTACATCATTGCCAAATCCACCAACACTAATTTGAGTAACAATC
JMFS166B07+ GAAAGACACTTTGCATTTACATCATTGCCAAATCCACCAACACTAATTTGAGTAACAATC
                      ____________________________________________________________
consensus GAAAGACACTTTGCATTTACATCATTGCCAAATCCACCAACACTAATTTGAGTAACAATC
 
. : . : . : . : . : . :
JMSF048M05+ ATACTCATATCCTCATCACTCCAGTCAGACCCCATTTTTATTTGAAATACTCCTCCTACC
JMFF003A03+ ATACTCATATCCTCATCACTCCAGTCAGACCCCATTTTTATTTGAAATACTCCTCCTACC
JMFS039F04+ ATACTCATATCCTCATCACTCCAGTCAGACCCCATTTTTATTTGAAATACTCCTCCTACC
JMFS166B07+ ATACTCATATCCTCATCACTCCAGTCAGACCCCATTTTTATTTGAAATACTCCTCCTACC
                      ____________________________________________________________
consensus ATACTCATATCCTCATCACTCCAGTCAGACCCCATTTTTATTTGAAATACTCCTCCTACC
 
. : . : . : . : . : . :
JMSF048M05+ TTTGTTCAACAATTACTATGTGTACCTCACTTACTCACTCACTCACTCCCTTCCGTCGCG
JMFF003A03+ TTTGTTCAACAATTACTATGTGTACCTCACTTACTCACTCACTCACTCCCTTCCGTCGCG
JMFS039F04+ TTTGTTCAACAATTACTATGTGTACCTCACTTACTCACTCACTCACTCCCTTCCGTCGCG
JMFS166B07+ TTTGTTCAACAATTACTATGTGTACCTCACTTACTCACTCACTCACTCCCTTCCGTCGCG
                      ____________________________________________________________
consensus TTTGTTCAACAATTACTATGTGTACCTCACTTACTCACTCACTCACTCCCTTCCGTCGCG
 
. : . : . : . : . : . :
JMSF048M05+ GACTAGCAGCACATTTCCGATTCGCCTCTCGCCGGC-GCAGTAGCTTCGAACTTCGAGGC
JMFF003A03+ GACTAGCAGCACATTTCCGATTCGCCTCTCGCCGGC-GCAGTAGCTTCGAACTTCGAGGC
JMFS039F04+ GACTAGCAGCACATTTCCGATTCGCCTCTCGCCGGCTGCAGTAGCTTCGAACTTCGAGGC
JMFS166B07+ GACTAGCAGCACATTTCCGATTCGCCTCTCGCCGGC-GCAGTAGCTTCGAACTTCGAGGC
                      ____________________________________________________________
consensus GACTAGCAGCACATTTCCGATTCGCCTCTCGCCGGC-GCAGTAGCTTCGAACTTCGAGGC
 
. : . : . : . : . : . :
JMSF048M05+ CATCAAGCCGGTCGATCGCCGGTAGCAGAGCGGCTTCGAACTTGTCTTGGAGCTTCCGTC
JMFF003A03+ CATCAAGCCGGTCGATCGCCGGTAGCAGAGCGGCTTCGAACTTGTCTTGGAGCTTCCGTC
JMFS039F04+ CATCAAGCCGGTCGATCGCCGGTAGCAGAGCGGCTTCGAACTTGTCTTGGAGCTTCCGTC
JMFS166B07+ CATCAAGCCGGTCGATCGCCGGTAGCAGAGCGGCTTCGAACTTGTCTTGGAGCTTCCGTC
                      ____________________________________________________________
consensus CATCAAGCCGGTCGATCGCCGGTAGCAGAGCGGCTTCGAACTTGTCTTGGAGCTTCCGTC
 
. : . : . : . : . : . :
JMSF048M05+ GTCGTTGTCTCTTCCAATTACTACTGCACCTCGTCGTCCCACCCGAGCCAATAAATCAAT
JMFF003A03+ GTCGTTGTCTCTTCCAATTACTACTGCACCTCGTCGTCCCACCCGAGCCAATAAATCAAT
JMFS039F04+ GTCGTTGTCTCTTCCAATTACTACTGCACCTCGTCGTCCCACCCGAGCCAATAAATCAAT
JMFS166B07+ GTCGTTGTCTCTTCCAATTACTACTGCACCTCGTCGTCCCACCCGAGCCAATAAATCAAT
                      ____________________________________________________________
consensus GTCGTTGTCTCTTCCAATTACTACTGCACCTCGTCGTCCCACCCGAGCCAATAAATCAAT
 
. : . : . : . : . : . :
JMSF048M05+ CGGAGCGAAGCCAAGACTCCAAC
JMFF003A03+ CGGAGCGAAGCCAAGACTCCAAC
JMFS039F04+ CGGAGCGAAGCCAAGACTCCAACAATGTCATGCCTGAGAAGAAAGATCGAAGCTTTAAAC
JMFS166B07+ CGGAGCGAAGCCAAGACTCCAACAATGTCATGCCTGAGAAGAAAGATCGAAGCTTTAAAC
                      ____________________________________________________________
consensus CGGAGCGAAGCCAAGACTCCAACAATGTCATGCCTGAGAAGAAAGATCGAAGCTTTAAAC
 
. : . : . : . : . : . :
JMFS039F04+ ACGAAATTGCATCCAAGAAGACAAGAA
JMFS166B07+ ACGAAATTGCATCCAAGAAGACAAGAACAGTGGGAGTGAACTGGCAAGTGGGAAGTGGGC
                      ____________________________________________________________
consensus ACGAAATTGCATCCAAGAAGACAAGAACAGTGGGAGTGAACTGGCAAGTGGGAAGTGGGC