| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS053H11 | Sequence | 639 | 003478 (10) | ref|XP_004248287.1| | 1e-112 | PREDICTED: nuclear cap-binding protein subunit 1 [Solanum lycopersicum] | |||||
| JMFS054F04 | Sequence | 608 | 003478 (10) | ref|XP_009593117.1| | 3e-109 | PREDICTED: nuclear cap-binding protein subunit 1 isoform X3 [Nicotiana tomentos | |||||
| JMFS059F08 | Sequence | 642 | 003478 (10) | ref|XP_004248287.1| | 4e-114 | PREDICTED: nuclear cap-binding protein subunit 1 [Solanum lycopersicum] | |||||
| JMFS075B11 | Sequence | 616 | 003478 (10) | ref|XP_009593118.1| | 3e-118 | PREDICTED: nuclear cap-binding protein subunit 1 isoform X4 [Nicotiana tomentos | |||||
| JMFS117F12 | Sequence | 544 | 003478 (10) | ref|XP_009593118.1| | 2e-83 | PREDICTED: nuclear cap-binding protein subunit 1 isoform X4 [Nicotiana tomentos | |||||
| JMFS146H11 | Sequence | 633 | 003478 (10) | ref|XP_009593118.1| | 5e-84 | PREDICTED: nuclear cap-binding protein subunit 1 isoform X4 [Nicotiana tomentos | |||||
| JMFS157B05 | Sequence | 625 | 003478 (10) | ref|XP_009593117.1| | 4e-110 | PREDICTED: nuclear cap-binding protein subunit 1 isoform X3 [Nicotiana tomentos | |||||
| JMSF003O22 | Sequence | 280 | 003478 (10) | gb|ACN43584.1| | 2e-36 | truncated nuclear cap-binding protein [Solanum tuberosum] | |||||
| JMSF023B05 | Sequence | 663 | 003478 (10) | ref|XP_004248287.1| | 1e-112 | PREDICTED: nuclear cap-binding protein subunit 1 [Solanum lycopersicum] | |||||
| JMSF026E22 | Sequence | 556 | 003478 (10) | ref|XP_009593118.1| | 8e-94 | PREDICTED: nuclear cap-binding protein subunit 1 isoform X4 [Nicotiana tomentos | |||||
This contig is upended
. : . : . : . : . : . :
JMFS075B11+ GACCATTGTCAACATCATCAATAA
____________________________________________________________
consensus GACCATTGTCAACATCATCAATAA
. : . : . : . : . : . :
JMFS075B11+ CCTCAAAGACAGAAAACCCTGAATCTGAAACATGCCTTCGGATACTTAAGTAGGCTTCAA
JMFS054F04+ ACTTAAGTAGGCTTCAA
JMFS059F08+ AACATGCCTTCGGATACTTAAGTAGGCTTCAA
JMFS053H11+ AACATGCCTTCGGATACTTAAGTAGGCTCNAA
JMFS157B05+ TAAGTAGGCTTCAA
JMSF023B05+ AACATGCCTTCGGATACTTAAGTAGGCTTCAA
____________________________________________________________
consensus CCTCAAAGACAGAAAACCCTGAATCTGAAACATGCCTTCGGATACTTAAGTAGGCTTCAA
. : . : . : . : . : . :
JMFS075B11+ TGCCAACCATGACTCTTTCAATCTCCTCAGGAACTTGCTCAACAAGCTCAGCCCCACCCC
JMFS054F04+ TGCCAACCATGACTCTTTCAATCTCCTCAGGAACTTGCTCAACAAGCTCAGCCCCACCCC
JMFS059F08+ TGCCAACCATGACTCTTTCAATCTCCTCAGGAACTTGCTCAACAAGCTCAGCCCCACCCC
JMFS053H11+ TGCCAACCATGACTCTTTCAATCTCCTCAGGAACTTGCTCAACAAGCTCAGCCCCACCCC
JMSF026E22+ CACCCC
JMFS157B05+ TGCCAACCATGACTCTTTCAATCTCCTCAGGAACTTGCTCAACAAGCTCAGCCCCACCCC
JMSF023B05+ TGCCAACCATGACTCTTTCAATCTCCTCAGGAACTTGCTCAACAAGCTCAGCCCCACCCC
____________________________________________________________
consensus TGCCAACCATGACTCTTTCAATCTCCTCAGGAACTTGCTCAACAAGCTCAGCCCCACCCC
. : . : . : . : . : . :
JMFS075B11+ ATGGAAGACATGATAAAATACAGGTTATATAAAAGTCAGCACGTGCTTGCCAAGCCGGAT
JMFS054F04+ ATGGAAGACATGATAAAATACAGGTTATATAAAAGTCAGCACGTGCTTGCCAAGCCGGAT
JMFS059F08+ ATGGAAGACATGATAAAATACAGGTTATATAAAAGTCAGCACGTGCTTGCCAAGCCGGAT
JMFS053H11+ ATGGAAGACATGATAAAATACAGGTTATATAAAAGTCAGCACGTGCTTGCCAAGCCGGAT
JMSF026E22+ ATGGAAGACATGATAAAATACAGGTTATATAAAAGTCAGCACGTGCTTGCCAAGCCGGAT
JMFS157B05+ ATGGAAGACATGATAAAATACAGGTTATATAAAAGTCAGCACGTGCTTGCCAAGCCGGAT
JMSF023B05+ ATGGAAGACATGATAAAATACAGGTTATATAAAAGTCAGCACGTGCTTGCCAAGCCGGAT
JMFS117F12+ AAAGTCAGCACGTGCTTGCCAAGCCGGAT
JMFS146H11+ TATAAAAGTCAGCACGTGCTTGCCAAGCCGGAT
____________________________________________________________
consensus ATGGAAGACATGATAAAATACAGGTTATATAAAAGTCAGCACGTGCTTGCCAAGCCGGAT
. : . : . : . : . : . :
JMFS075B11+ TTCCTTTCTCCTCATCCACTGTAGTTGCTGCTGATGACAATAATGTTTCAAAAACAACCA
JMFS054F04+ TTCCTTTCTCCTCATCCACTGTAGTTGCTGCTGATGACAATAATGTTTCAAAAACAACCA
JMFS059F08+ TTCCTTTCTCCTCATCCACTGTAGTTGCTGCTGATGACAATAATGTTTCAAAAACAACCA
JMFS053H11+ TTCCTTTCTCCTCATCCACTGTAGTTGCTGCTGATGACAATAATGTTTCAAAAACAACCA
JMSF026E22+ TTCCTTTCTCCTCATCCACTGTAGTTGCTGCTGATGACAATAATGTTTCAAAAACAACCA
JMFS157B05+ TTCCTTTCTCCTCATCCACTGTAGTTGCTGCTGATGACAATAATGTTTCAAAAACAACCA
JMSF023B05+ TTCCTTTCTCCTCATCCAGTGTAGTTGCTGCTGATGACAATAATGTTTCAAAAACAACCA
JMFS117F12+ TTCCTTTCTCCTCATCCACTGTAGTTGCTGCTGATGACAATAATGTTTCAAAAACAACCA
JMFS146H11+ TTCCTTTCTCCTCATCCACTGTAGTTGCTGCTGATGACAATAATGTTTCAAAAACAACCA
____________________________________________________________
consensus TTCCTTTCTCCTCATCCACTGTAGTTGCTGCTGATGACAATAATGTTTCAAAAACAACCA
. : . : . : . : . : . :
JMFS075B11+ CTAAAGAACTTGATTGGATTACTTTGCTGCACATCAACACAGTCAGGAACCTCAACAAAA
JMFS054F04+ CTAAAGAACTTGATTGGATTACTTTGNTGCACATCAACACAGTCAGGAACCTCAACAAAA
JMFS059F08+ CTAAAGAACTTGATTGGATTACTTTGCTGCACATCAACACAGTCAGGAACCTCAACAAAA
JMFS053H11+ CTAAAGAACTTGATTGGATTACTTTGCTGCACATCAACACAGTCAGGAACCTCAACAAAA
JMSF026E22+ CTAAAGAACTTGATTGGATTACTTTGCTGCACATCAACACAGTCAGGAACCTCAACAAAA
JMFS157B05+ CTAAAGAACTTGATTGGATTACTTTGCTGCACATCAACACAGTCAGGAACCTCAACAAAA
JMSF023B05+ CTAAAGAACTTGATTGGATTACTTTGCTGCACATCAACACAGTCAGGAACCTCAACAAAA
JMFS117F12+ CTAAAGAACTTGATTGGATTACTTTGCTGCACATCAACACAGTCAGGAACCTCAACAAAA
JMFS146H11+ CTAAAGAACTTGATTGGATTACTTTGCTGCACATCAACACAGTCAGGAACCTCAACAAAA
____________________________________________________________
consensus CTAAAGAACTTGATTGGATTACTTTGCTGCACATCAACACAGTCAGGAACCTCAACAAAA
. : . : . : . : . : . :
JMFS075B11+ TTCGGATTGAATTGCAATTTCCAGAATCCAAGGCATCCTGCAGGTTACTTTGAGTGCTCT
JMFS054F04+ TTCGGATTGAATTGCAATTTCCAGAATCCAAGGCATCCTGCAGGTTACTTTGAGTGCTCT
JMFS059F08+ TTCGGATTGAATTGCAATTTCCAGAATCCAAGGCATCCTGCAGGTTACTTTGAGTGCTCT
JMFS053H11+ TTCGGATTGAATTGCAATTTCCAGAATCCAAGGCATCCTGCAGGTTACTTTGAGTGCTCT
JMSF026E22+ TTCGGATTGAATTGCAATTTCCAGAATCCAAGGCATCCTGCAGGTTACTTTGAGTGCTCT
JMFS157B05+ TTCGGATTGAATTGCAATTTCCAGAATCCAAGGCATCCTGCAGGTTACTTTGAGTGCTCT
JMSF023B05+ TTCGGATTGAATTGCAATTTCCAGAATCCAAGGCATCCTGCAGGTTACTTTGAGTGCTCT
JMFS117F12+ TTCGGATTGAATTGCAATTTCCAGAATCCAAGGCATCCTGCAGGTTACTTTGAGTGCTCT
JMFS146H11+ TTCGGATTGAATTGCAATTTCCAGAATCCAAGGCATCCTGCAGGTTACTTTGAGTGCTCT
____________________________________________________________
consensus TTCGGATTGAATTGCAATTTCCAGAATCCAAGGCATCCTGCAGGTTACTTTGAGTGCTCT
. : . : . : . : . : . :
JMFS075B11+ CCACTAATTTCCTGACAAATTCTTCATTCTCCAAATTCAGCAAACCAACCAAAGTTCCAT
JMFS054F04+ CCANTAATTTCCTGACAAATTCTTCATTCTCCAAATTCAGCAAACCAACCAAAGTTCCAT
JMFS059F08+ CCACTAATTTCCTGACAAATTCTTCATTCTCCAAATTCAGCAAACCAACCAAAGTTCCAT
JMFS053H11+ CCACTAATTTCCTGACAAATTCTTCATTCTCCAAATTCAGCAAACCAACCAAAGTTCCAT
JMSF026E22+ CCACTAATTTCCTGACAAATTCTTCATTCTCCAAATTCAGCAAACCAACCAAAGTTCCAT
JMFS157B05+ CCACTAATTTCCTGACAAATTCTTCATTCTCCAAATTCAGCAAACCAACCAAAGTTCCAT
JMSF023B05+ CCACTAATTTCCTGACAAATTCTTCATTCTCCAAATTCAGCAAACCAACCAAAGTTCCAT
JMFS117F12+ CCACTAATTTCCTGACAAATTCTTCATTCTCCAAATTCAGCAAACCAACCAAAGTTCCAT
JMSF003O22+ CCAAATTCAGCAAACCAACCAAAGTTCCAT
JMFS146H11+ CCACTAATTTCCTGACAAATTCTTCATTCTCCAAATTCAGCAAACCAACCAAAGTTCCAT
____________________________________________________________
consensus CCACTAATTTCCTGACAAATTCTTCATTCTCCAAATTCAGCAAACCAACCAAAGTTCCAT
. : . : . : . : . : . :
JMFS075B11+ AGAGTGGAATCTTGTGAGGCAATTGCTCAGCACACTGGAGAAGAAACGGCAGAATATCAT
JMFS054F04+ AGAGTGGAATCTTGTGAGGCAATTGCTCAGCACACTGGAGAAGAAACGGCAGAATATCAT
JMFS059F08+ AGAGTGGAATCTTGTGAGGCAATTGCTCAGCACACTGGAGAAGAAACGGCAGAATATCAT
JMFS053H11+ AGAGTGGAATCTTGTGAGGCAATTGCTCAGCACACTGGAGAAGAAACGGCAGAATATCAT
JMSF026E22+ AGAGTGGAATCTTGTGAGGCAATTGCTCAGCACACTGGAGAAGAAACGGCAGAATATCAT
JMFS157B05+ AGAGTGGAATCTTGTGAGGCAATTGCTCAGCACACTGGAGAAGAAACGGCAGAATATCAT
JMSF023B05+ AGAGTGGAATCTTGTGAGGCAATTGCTCAGCACACTGGAGAAGAAACGGCAGAATATCAT
JMFS117F12+ AGAGTGGAATCTTGTGAGGCAATTGCTCAGCACACTGGAGAAGAAACGGCAGAATATCAT
JMSF003O22+ AGAGTGGAATCTTGTGAGGCAATTGCTCAGCACACTGGAGAAGAAACGGCAGAATATCAT
JMFS146H11+ AGAGTGGAATCTTGTGAGGCAATTGCTCAGCACACTGGAGAAGAAACGGCAGAATATCAT
____________________________________________________________
consensus AGAGTGGAATCTTGTGAGGCAATTGCTCAGCACACTGGAGAAGAAACGGCAGAATATCAT
. : . : . : . : . : . :
JMFS075B11+ CCCCAGAATGCTCTAATTCTCGGCGAACCGAGCCGAAACATGTCTCAATTTGGTCTTTGA
JMFS054F04+ CCCCAGAATGCTCTAATTCTCGGCGAACCGAGCCGAAACATGTCTCAATTTGGTCTTTGA
JMFS059F08+ CCCCAGAATGCTCTAATTCTCGGCGAACCGAGCCGAAACATGTCTCAATTTGGTCTTTGA
JMFS053H11+ CCCCAGAATGCTCTAATTCTCGGCGAACCGAGCCGAAACATGTCTCAATTTGGTCTTTGA
JMSF026E22+ CCCCAGAATGCTCTAATTCTCGGCGAACCGAGCCGAAACATGTCTCAATTTGGTCTTTGA
JMFS157B05+ CCCCAGAATGCTCTAATTCTCGGCGAACCGAGCCGAAACATGTCTCAATTTGGTCTTTGA
JMSF023B05+ CCCCAGAATGCTCTAATTCTCGGCGAACCGAGCCGAAACATGTCTCAATTTGGTCTTTGA
JMFS117F12+ CCCCAGAATGCTCTAATTCTCGGCGAACCGAGCCGAAACATGTCTCAATTTGGTCTTTGA
JMSF003O22+ CCCCAGAATGCTCTAATTCTCGGCGAACCGAGCCGAAACATGTCTCAATTTGGTCTTTGA
JMFS146H11+ CCCCAGAATGCTCTAATTCTCGGCGAACCGAGCCGAAACATGTCTCAATTTGGTCTTTGA
____________________________________________________________
consensus CCCCAGAATGCTCTAATTCTCGGCGAACCGAGCCGAAACATGTCTCAATTTGGTCTTTGA
. : . : . : . : . : . :
JMFS075B11+ AGTCTGGATTTCCGGCGTACTCCGGGCACTTGTCGCCGATCCGTAAGAGCAA
JMFS054F04+ AGTCTGGATTTCCGGCGTACTCCGGGCACTTGTCGCCGATCCGTAAGAGCAAGCTCCGCC
JMFS059F08+ AGTCTGGATTTCCGGCGTACTCCGGGCACTTGTCGCCGATCCGTAAGAGCAAGCTCCGCC
JMFS053H11+ AGTCTGGATTTCCGGCGTACTCCGGGCACTTGTCGCCGATCCGTAAGAGCAAGCTCCGCC
JMSF026E22+ AGTCTGGATTTCCGGCGTACTCCGGGCACTTGTCGCCGATCCGTAAGAGCAAGCTCCGCC
JMFS157B05+ AGTCTGGATTTCCGGCGTACTCCGGGCACTTGTCGCCGATCCGTAAGAGCAAGCTCCGCC
JMSF023B05+ AGTCTGGATTTCCGGCGTACTCCGGGCACTTGTCGCCGATCCGTAAGAGCAAGCTCCGCC
JMFS117F12+ AGTCTGGATTTCCGGCGTACTCCGGGCACTTGTCGCCGATCCGTAAGAGCAAGCTCCGCC
JMSF003O22+ AGTCTGGATTTCCGGCGTACTCCGGGCACTCGTCGCCGATCCGTAAGAGCAAGCTCCGCC
JMFS146H11+ AGTCTGGATTTCCGGCGTACTCCGGGCACTTGTCGCCGATCCGTAAGAGCAAGCTCCGCC
____________________________________________________________
consensus AGTCTGGATTTCCGGCGTACTCCGGGCACTTGTCGCCGATCCGTAAGAGCAAGCTCCGCC
. : . : . : . : . : . :
JMFS054F04+ AACCGCTCATTCTAAACACTTCAAGAAGAAGAGAGAGACGGAACGGAGGGG
JMFS059F08+ AACCGCTCATTCTAAACACTTCAAGAAGAAGAGAGAGACGGAACGGAGGGGAGAACAGAG
JMFS053H11+ AACCGCTCATTCTAAACACTTCAAGAAGAAGAGAGAGACGGAACGGAGGGGAGAACAGAG
JMSF026E22+ AACCGCTCATTCTAAACACTTCAAGAAGAAGAGAGAGACGGAACGGAGGGGAGAACAGAG
JMFS157B05+ AACCGCTCATTCTAAACACTTCAAGAAGAAGAGAGAGACGGAACGGAGGGGAGAACAGAG
JMSF023B05+ AACCGCTCATTCTAAACACTTCAAGAAGAAGAGAGAGACGGAACGGAGGGGAGAACAGAG
JMFS117F12+ AACCGCTCATTCTAAACACTTCAAGAAGAAGAGAGAGACGGAACGGAGGGGAGAACAGAG
JMSF003O22+ AACCGCTCATTCTAAACACTTCAAGAAGAAGAGAGAGACGGAACGGAGGGGAGAACAGAG
JMFS146H11+ AACCGCTCATTCTAAACACTTCAAGAAGAAGAGAGAGACGGAACGGAGGGGAGAACAGAG
____________________________________________________________
consensus AACCGCTCATTCTAAACACTTCAAGAAGAAGAGAGAGACGGAACGGAGGGGAGAACAGAG
. : . : . : . : . : . :
JMFS059F08+ TACAAAG
JMFS053H11+ TACAAAG
JMSF026E22+ TACAAAGGC
JMFS157B05+ TACAAAGGCGG
JMSF023B05+ TACAAAGGCGGGGAAGATTTTTGG
JMFS117F12+ TACAAAGGCGGGGAAGATTTTTGG
JMSF003O22+ TACAAAGGC
JMFS146H11+ TACAAAGGCGGGGAAGATTTTTGGGGACAAGGCCCAAGGGTTTTTTTATGCAAATTTTAT
____________________________________________________________
consensus TACAAAGGCGGGGAAGATTTTTGGGGACAAGGCCCAAGGGTTTTTTTATGCAAATTTTAT
. : . : . : . : . : . :
JMFS146H11+ AATAGGAACCAGGATATAATTTCAAACCAATTGCGAGGTTTATAAATTATAGCTTGTTTC
____________________________________________________________
consensus AATAGGAACCAGGATATAATTTCAAACCAATTGCGAGGTTTATAAATTATAGCTTGTTTC