Contig 003472:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS111B12Sequence620003472 (3)ref|XP_009760488.1|1e-55PREDICTED: TMV resistance protein N-like [Nicotiana sylvestris]
JMFS135H01Sequence615003472 (3)gb|AAZ07909.1|5e-65NBS-LRR protein [Ipomoea batatas]
JMSF026O09Sequence682003472 (3)ref|XP_009760488.1|3e-61PREDICTED: TMV resistance protein N-like [Nicotiana sylvestris]692023546gb|AAF71696.1|AF198169_11e-123-hydroxy-3-methylglutaryl-CoA-synthase [Hygrochilus japonicus]

Alignment

This contig is upended


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JMFS111B12+                  CCTTTAACAAACTTGAGCAACAGTGAAATGATAACTTACGGAGATTATGACAG
JMSF026O09+                                      CAGTGAAATGATAACTTACGGAGATTATGACAG
                      ____________________________________________________________
consensus                    CCTTTAACAAACTTGAGCAACAGTGAAATGATAACTTACGGAGATTATGACAG
 
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JMFS111B12+           CCACTAAAGTTCGGAGTCCTTGTGAGATGTTTGCACCAAGACAAATCCAAAGACTCGAGA
JMSF026O09+           CCACTAAAGTTCGGAGTCCTTGTGAGATGTTTGCACCAAGACAAATCCAAAGACTCGAGA
                      ____________________________________________________________
consensus             CCACTAAAGTTCGGAGTCCTTGTGAGATGTTTGCACCAAGACAAATCCAAAGACTCGAGA
 
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JMFS111B12+           CAAGGAAAATACTTTAGAGGGGCTTTAAATTCTTTGATGTTGCTATTCCCAATTTCCAGA
JMSF026O09+           CAAGGAAAATACTTTAGAGGGGCTTTAAATTCTTTGATGTTGCTATTCCCAATTTCCAGA
                      ____________________________________________________________
consensus             CAAGGAAAATACTTTAGAGGGGCTTTAAATTCTTTGATGTTGCTATTCCCAATTTCCAGA
 
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JMFS111B12+           CTCACAAGCTTCTCAAAAAAACCATTTGATGGAAAATTGATAGATTTCAAAGGGCAATGA
JMSF026O09+           CTCACAAGCTTCTCAAAAAAACCATTTGATGGAAAATTGATAGATTTCAAAGGGCAATGA
                      ____________________________________________________________
consensus             CTCACAAGCTTCTCAAAAAAACCATTTGATGGAAAATTGATAGATTTCAAAGGGCAATGA
 
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JMFS111B12+           TTCCATTGCAAACATCTAAGCACCTTGGAACTGGATAGATGTTTGAATTTTCCATCAAGA
JMSF026O09+           TTCCATTGCAAACATCTAAGCACCTTGGAACTGGATAGATGTTTGAATTTTCCATCAAGA
                      ____________________________________________________________
consensus             TTCCATTGCAAACATCTAAGCACCTTGGAACTGGATAGATGTTTGAATTTTCCATCAAGA
 
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JMFS111B12+           TGGACTTCATCAATTTCAAGAATTCTTAAATTCTCCATGTTCTTAAATGCTTTTGTATTG
JMSF026O09+           TGGACTTCATCAATTTCAAGAATTCTTAAATTCTCCATGTTCTTAAATGCTTTTGTATTG
                      ____________________________________________________________
consensus             TGGACTTCATCAATTTCAAGAATTCTTAAATTCTCCATGTTCTTAAATGCTTTTGTATTG
 
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JMFS111B12+           TACTTCACATTTTTCATAGGAGAATAGTTGAATACAATCACCTCAATCTTTTTTGTACCC
JMSF026O09+           TACTTCACATTTTTCATAGGAGAATAGTTGAATACAATCACCTCAATCTTTTTTGTACCC
                      ____________________________________________________________
consensus             TACTTCACATTTTTCATAGGAGAATAGTTGAATACAATCACCTCAATCTTTTTTGTACCC
 
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JMFS111B12+           TTTTCCCCTATAAGCACATCATGGATATCATAAGGACACCACAATCGACTACGCTCACCA
JMSF026O09+           TTTTCCCCTATAAGCACATCATGGATATCATAAGGACACCACAATCGACTACGCTCACCA
                      ____________________________________________________________
consensus             TTTTCCCCTATAAGCACATCATGGATATCATAAGGACACCACAATCGACTACGCTCACCA
 
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JMFS111B12+           GGATTGTTGGGTGACTCCGAACGAATAATTTCTCTCCCCATCTCTCGAATTAAGCTATGC
JMSF026O09+           GGATTGTTGGGTGACTCCGAACGAATAATTTCTCTCCCCATCTCTCGAATTAAGCTATGC
JMFS135H01+                                                        CGAATTAAGCTATGC
                      ____________________________________________________________
consensus             GGATTGTTGGGTGACTCCGAACGAATAATTTCTCTCCCCATCTCTCGAATTAAGCTATGC
 
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JMFS111B12+           ATACTAATCTCAGACCACTCATCAAAATTTAGCAAGCATTTGTCAACCAAGTCTTGAATT
JMSF026O09+           ATACTAATCTCAGACCACTCATCAAAATTTAGCAAGCATTTGTCAACCAAGTCTTGAATT
JMFS135H01+           ATACTAATCTCAGACCACTCATCAAAATTTAGCAAGCATTTGTCAACCAAGTCTTGAATT
                      ____________________________________________________________
consensus             ATACTAATCTCAGACCACTCATCAAAATTTAGCAAGCATTTGTCAACCAAGTCTTGAATT
 
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JMFS111B12+           TCAATGTCTGAGAAATACCCCATGTTA                                 
JMSF026O09+           TCAATGTCTGAGAAATACCCCATGTTATCAATTTTCTCCTTAGAAACTCCACCGGAGAAA
JMFS135H01+           TCAATGTCTGAGAAATACCCCATGTTATCAATTTTCTCCTTAGAAACTCCACCGGAGAAA
                      ____________________________________________________________
consensus             TCAATGTCTGAGAAATACCCCATGTTATCAATTTTCTCCTTAGAAACTCCACCGGAGAAA
 
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JMSF026O09+           CAAACAAGATCAAGAAAAAGAGATTTTATATGATCATCTGGAAGCCCA            
JMFS135H01+           CAAACAAGATCAAGAAAAAGAGATTTTATATGATCATCTGGAAGCCCATCATAACTAATC
                      ____________________________________________________________
consensus             CAAACAAGATCAAGAAAAAGAGATTTTATATGATCATCTGGAAGCCCATCATAACTAATC
 
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JMFS135H01+           TTAAGTTTAGCTTGAATGTCATTATGAGGAATTCCTTTCAATTTTTCAAATGCACTAACC
                      ____________________________________________________________
consensus             TTAAGTTTAGCTTGAATGTCATTATGAGGAATTCCTTTCAATTTTTCAAATGCACTAACC
 
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JMFS135H01+           CACTCCTTTTTCGATTTATGACACAGATAAGCCCCTAAAACTTCAAGAGCTAATGGAAGT
                      ____________________________________________________________
consensus             CACTCCTTTTTCGATTTATGACACAGATAAGCCCCTAAAACTTCAAGAGCTAATGGAAGT
 
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JMFS135H01+           CCCTCACAATAAGCAACTATGTCATCTAGAAGCTTATTATAATCTTCATTTTGCAACGCA
                      ____________________________________________________________
consensus             CCCTCACAATAAGCAACTATGTCATCTAGAAGCTTATTATAATCTTCATTTTGCAACGCA
 
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JMFS135H01+           GGCTCTCCAAATGCATGTAGACTAAACAGCTGCAAAGACTCCTCATGGTTCAATACCTTA
                      ____________________________________________________________
consensus             GGCTCTCCAAATGCATGTAGACTAAACAGCTGCAAAGACTCCTCATGGTTCAATACCTTA
 
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JMFS135H01+           ACTTCATAATGTTCGTCCACATTCAACTCTTTAAAAACATGTGCCTCTCTTGTGGTTAAA
                      ____________________________________________________________
consensus             ACTTCATAATGTTCGTCCACATTCAACTCTTTAAAAACATGTGCCTCTCTTGTGGTTAAA
 
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JMFS135H01+           ATAAGTCTACTTCCTCCACCAAACCAATCTCGTCCTCCACATAATTTATTAAATTGATTT
                      ____________________________________________________________
consensus             ATAAGTCTACTTCCTCCACCAAACCAATCTCGTCCTCCACATAATTTATTAAATTGATTT
 
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JMFS135H01+           CTATGCTCCAAATTATCAAGGACAATAAGACACTTTCTTGCTTGAAGTCGCCTTTTCATC
                      ____________________________________________________________
consensus             CTATGCTCCAAATTATCAAGGACAATAAGACACTTTCTTGCTTGAAGTCGCCTTTTCATC