Contig 003468:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004G02Sequence575003468 (3)ref|XP_004253096.1|4e-46PREDICTED: far upstream element-binding protein 2 [Solanum lycopersicum]693013606 (3)ref|XP_010097084.1|7e-08Far upstream element-binding protein 2 [Morus notabilis] gb|EXB66885.1| Far upst
JMFS096B02Sequence621003468 (3)ref|XP_004253096.1|1e-71PREDICTED: far upstream element-binding protein 2 [Solanum lycopersicum]
JMFS132D11Sequence588003468 (3)ref|XP_004253096.1|2e-64PREDICTED: far upstream element-binding protein 2 [Solanum lycopersicum]

Alignment

This contig is upended


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JMFS096B02+                                                AAAGAACATCTTGAATCAACTGC
                      ____________________________________________________________
consensus                                                  AAAGAACATCTTGAATCAACTGC
 
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JMFS096B02+           TCAGCCTTGGCTATCTGCTCTGGAGTGCCCATTAGTTCAACCCCTCTAGTCTGAGAACTA
JMFS132D11+                       ATCTGCTCTGGAGTGCCCATTAGTTCAACCCCTCTAGTCTGAGAACTA
                      ____________________________________________________________
consensus             TCAGCCTTGGCTATCTGCTCTGGAGTGCCCATTAGTTCAACCCCTCTAGTCTGAGAACTA
 
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JMFS096B02+           AGGTCAGCATCCATGTCTCTGGTAACTTGTATCTTTGCTCCAGATTGGAGTTGAAGATAC
JMFF004G02+                                                 TCCAGATTGGAGTTGAAGATAC
JMFS132D11+           AGGTCAGCATCCATGTCTCTGGTAACTTGTATCTTTGCTCCAGATTGGAGTTGAAGATAC
                      ____________________________________________________________
consensus             AGGTCAGCATCCATGTCTCTGGTAACTTGTATCTTTGCTCCAGATTGGAGTTGAAGATAC
 
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JMFS096B02+           CTAATGGTTTCCCCACCCTTCCCTATGATTACACCAACCCTGGAATTTGGAACCTCTATC
JMFF004G02+           NTAATGGTTTCCCCACCCTTCCCTATGATTACACCAACCCTGGAATTTGGAACCTCTATC
JMFS132D11+           CTAATGGTTTCCCCACCCTTCCCTATGATTACACCAACCCTGGAATTTGGAACCTCTATC
                      ____________________________________________________________
consensus             CTAATGGTTTCCCCACCCTTCCCTATGATTACACCAACCCTGGAATTTGGAACCTCTATC
 
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JMFS096B02+           TTCTTGCTTGGACCAGGATAACCGAATGATCCAGTTACTGAAGGAAGTAAAGTAGACCCA
JMFF004G02+           TTCTTGCTTGGACCAGGATAACCGAATGATCCAGTTACTGAAGGAAGTAAAGTAGACCCA
JMFS132D11+           TTCTTGCTTGGACCAGGATAACCGAATGATCCAGTTACTGAAGGAAGTAAAGTAGACCCA
                      ____________________________________________________________
consensus             TTCTTGCTTGGACCAGGATAACCGAATGATCCAGTTACTGAAGGAAGTAAAGTAGACCCA
 
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JMFS096B02+           ACTGGCTTCTGAGGTTCTCTAGTTTCAAATGCACCAGCACCAGCACCACCACCGTTGTCA
JMFF004G02+           ACTGGCTTCTGAGGTTCTCTAGTTTCAAATGCACCAGCACCAGCACCACCACCGTTGTCA
JMFS132D11+           ACTGGCTTCTGAGGTTCTCTAGTTTCAAATGCACCAGCACCAGCACCACCACCGTTGTCA
                      ____________________________________________________________
consensus             ACTGGCTTCTGAGGTTCTCTAGTTTCAAATGCACCAGCACCAGCACCACCACCGTTGTCA
 
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JMFS096B02+           ACCCTGGGCTTTTTTGGATCCGAGTTGTTGATTAGCCGAGCAGCGATCTCCTGAGCCCTC
JMFF004G02+           ACCCTGGGCTTTTTTGGATCCGAGTTGTTGATTAGCCGAGCAGCGATCTCCTGAGCCCTC
JMFS132D11+           ACCCTGGGCTTTTTTGGATCCGAGTTGTTGATTAGCCGAGCAGCGATCTCCTGAGCCCTC
                      ____________________________________________________________
consensus             ACCCTGGGCTTTTTTGGATCCGAGTTGTTGATTAGCCGAGCAGCGATCTCCTGAGCCCTC
 
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JMFS096B02+           TGCTTCGCCAGCTGGAAGTCGTCCATCGGAGGCGCGACATTATTGTACGAAGGAGGAGGA
JMFF004G02+           TGCTTCGCCAGCTGGAAGTCGTCCATCGGAGGCGCGACATTATTGTACGAAGGAGGAGGA
JMFS132D11+           TGCTTCGCCAGCTGGAAGTCGTCCATCGGAGGCGCGACATTATTGTACGAAGGAGGAGGA
                      ____________________________________________________________
consensus             TGCTTCGCCAGCTGGAAGTCGTCCATCGGAGGCGCGACATTATTGTACGAAGGAGGAGGA
 
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JMFS096B02+           GCGCCCGCGGCGGCGGAACCGTCGGGTGGAGACAGTGAAGAGATTGGGGCAGAGAATCCG
JMFF004G02+           GCGCCCGCGGCGGCGGAACCGTCGGGTGGAGACAGTGAAGAGATTGGGGCAGAGAATCCG
JMFS132D11+           GCGCCCGCGGCGGCGGAACCGTCGGGTGGAGACAGTGAAGAGATTGGGGCAGAGAATCCG
                      ____________________________________________________________
consensus             GCGCCCGCGGCGGCGGAACCGTCGGGTGGAGACAGTGAAGAGATTGGGGCAGAGAATCCG
 
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JMFS096B02+           GTGGGCCTGCGTGACACCGGGGAAGGGGAGGTTGGCTCCTCGTACTTCCTCTTGTTCGAC
JMFF004G02+           GTGGGCCTGCGTGACACCGGGGAAGGGGAGGTTGGCTCCTCGTACTTCCTCTTGTTCGAC
JMFS132D11+           GTGGGCCTGCGTGACACCGGGGAAGGGGAGGTTGGCTCCTCGTACTTCCTCTTGTTCGAC
                      ____________________________________________________________
consensus             GTGGGCCTGCGTGACACCGGGGAAGGGGAGGTTGGCTCCTCGTACTTCCTCTTGTTCGAC
 
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JMFS096B02+           CCCGCTTCCGATGCGTACTGTGCCTCTTCAGCCATTTTTG                    
JMFF004G02+           CCCGCTTCCGATGCGTACTGTGCCTCTTCAGCCAT                         
JMFS132D11+           CCCGCTTCCGATGCGTACTGTGCCTCTTCAGCCATTTTTGATTGATTTTTGGTGTGAGAA
                      ____________________________________________________________
consensus             CCCGCTTCCGATGCGTACTGTGCCTCTTCAGCCATTTTTGATTGATTTTTGGTGTGAGAA