Contig 003466:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS127F11Sequence617003466 (2)
JMSF033H20Sequence694024224ref|XP_006354193.1|2e-21PREDICTED: DEAD-box ATP-dependent RNA helicase 41-like isoform X1 [Solanum tube719003466 (2)ref|XP_010316002.1|2e-13PREDICTED: DEAD-box ATP-dependent RNA helicase 41 isoform X3 [Solanum lycopersi

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033H20+                                 GGAAAATAAGAAACTGTTCCCGGAGTTGGTTGAAATC
                      ____________________________________________________________
consensus                                    GGAAAATAAGAAACTGTTCCCGGAGTTGGTTGAAATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033H20+          CTAAAATCTTCTGGGGCTGCCATTCCATCTGAGCTTGCTAATTCAAAGTATAGTGTTGGC
                      ____________________________________________________________
consensus             CTAAAATCTTCTGGGGCTGCCATTCCATCTGAGCTTGCTAATTCAAAGTATAGTGTTGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033H20+          TCTTTCTCTGTTGGCAGGCATCAGAAGAGAAGGAAGTATGGAACTTGAAGTAGATTTATT
                      ____________________________________________________________
consensus             TCTTTCTCTGTTGGCAGGCATCAGAAGAGAAGGAAGTATGGAACTTGAAGTAGATTTATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033H20+          TGCTTTATATCTTGTACCCCGATCCTTATACTTGTTCAATTTTCAAAGATTACAGTTCAC
                      ____________________________________________________________
consensus             TGCTTTATATCTTGTACCCCGATCCTTATACTTGTTCAATTTTCAAAGATTACAGTTCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033H20+          GTTAAGGATACCTGAAGTGACTTGCTTGTGATCCTCAGAATTCTATTGTACTGAGTTATC
                      ____________________________________________________________
consensus             GTTAAGGATACCTGAAGTGACTTGCTTGTGATCCTCAGAATTCTATTGTACTGAGTTATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033H20+          GCTAATGGAGGCCCTGTGTTATTTGATATTGGGGCTGCCAAATGCCAGGATATGTGAAGC
                      ____________________________________________________________
consensus             GCTAATGGAGGCCCTGTGTTATTTGATATTGGGGCTGCCAAATGCCAGGATATGTGAAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033H20+          AGCCACTGGTACAAACTACAAAGAGAGGCAGCATACACCGTCAATCATAAATTCAAGAAC
                      ____________________________________________________________
consensus             AGCCACTGGTACAAACTACAAAGAGAGGCAGCATACACCGTCAATCATAAATTCAAGAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033H20+          AAGCTTGAGAGGGGGTAACCCCTGCCAAGTTGGCTAAGGATACAAACTTGTAACCACAAG
JMFS127F11+                                                          TTGTAATCACAAG
                      ____________________________________________________________
consensus             AAGCTTGAGAGGGGGTAACCCCTGCCAAGTTGGCTAAGGATACAAACTTGTAATCACAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033H20+          GTCACGAGCTTGAATCCCAGCCTTCTTGGTATGAGCCGGTCAGCTATGGGTAACCTAGAC
JMFS127F11+           GTCACGAGTTTAAATCCCAGCCTTCTTGGCTTCAGCCGATCAGCTATGGGCAACCTAGAC
                      ____________________________________________________________
consensus             GTCACGAGTTTGAATCCCAGCCTTCTTGGTTTGAGCCGGTCAGCTATGGGTAACCTAGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033H20+          TGGTTTACGTCTTTGTAATCCTTTGCCGGCTA                            
JMFS127F11+           TGGTTTACCTCCTTGTGATCCTTTGCCTGCTACAAAAAAGACGGGATTTACCCGGTGTAC
                      ____________________________________________________________
consensus             TGGTTTACGTCTTTGTGATCCTTTGCCTGCTACAAAAAAGACGGGATTTACCCGGTGTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS127F11+           ACCCGGTAGCTGCGGGGACCACACAGATGGTGCTCTTAACAGAAACTGATCTCCCTTTAA
                      ____________________________________________________________
consensus             ACCCGGTAGCTGCGGGGACCACACAGATGGTGCTCTTAACAGAAACTGATCTCCCTTTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS127F11+           AGCAACTCAAATACAAAGTTGCACCAAAATTATACAGACTGTTTTGGGTTTACAGTAGAG
                      ____________________________________________________________
consensus             AGCAACTCAAATACAAAGTTGCACCAAAATTATACAGACTGTTTTGGGTTTACAGTAGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS127F11+           CACAAGACACTCTTTATGTACTATCCAAGCATCATCTAAGTATGTATGTGACATAAAACC
                      ____________________________________________________________
consensus             CACAAGACACTCTTTATGTACTATCCAAGCATCATCTAAGTATGTATGTGACATAAAACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS127F11+           ACCCCAAAACTGCTAAAGCTAGCCCACAGCTTGAGGTTGGATGATGGAGTGGATGAAAAG
                      ____________________________________________________________
consensus             ACCCCAAAACTGCTAAAGCTAGCCCACAGCTTGAGGTTGGATGATGGAGTGGATGAAAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS127F11+           TTCTCTTTTTTTATAATAAATTCCAAGCTTGTTTTCTCCGCAATGCAGGGTTATTGTGTG
                      ____________________________________________________________
consensus             TTCTCTTTTTTTATAATAAATTCCAAGCTTGTTTTCTCCGCAATGCAGGGTTATTGTGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS127F11+           GAACTCAAAAAGTAAATGAACCCCAAAATGGAGAAAACCAAGTGGATTCCTAGTATGGGG
                      ____________________________________________________________
consensus             GAACTCAAAAAGTAAATGAACCCCAAAATGGAGAAAACCAAGTGGATTCCTAGTATGGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS127F11+           AAAAAGTTTCAGAAATCATAGGATTTTGTGGAAGAAGCTTCTTATGTTGCTTTAAAGAAA
                      ____________________________________________________________
consensus             AAAAAGTTTCAGAAATCATAGGATTTTGTGGAAGAAGCTTCTTATGTTGCTTTAAAGAAA