Contig 003458:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN038I16Sequence595003458 (2)gb|ADV02772.1|5e-32lipid transfer protein 1a [Ipomoea batatas]
JMFS118C11Sequence606003458 (2)gb|ADV02772.1|2e-19lipid transfer protein 1a [Ipomoea batatas]

Alignment

This contig is upended


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JMFS118C11+                                                                AGGGTAC
                      ____________________________________________________________
consensus                                                                  AGGGTAC
 
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JMFN038I16+                                     TTAATACAAAGATGGAACCCTAACAAACGGCATT
JMFS118C11+           AGAGAATTGTACGTACTGCATTGTAATTAATACAAAGATGGAACCCTAACAAACGGCATT
                      ____________________________________________________________
consensus             AGAGAATTGTACGTACTGCATTGTAATTAATACAAAGATGGAACCCTAACAAACGGCATT
 
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JMFN038I16+           CCTAACTGGGAAAGGCAGTCCCGTCTTATTTATTATTCCTCATCATAATAGCATTGCCAC
JMFS118C11+           CCTAACTGGGAAAGGCAGTCCCGTCTTATTTATTATTCCTCATCATAATAGCATTGCCAC
                      ____________________________________________________________
consensus             CCTAACTGGGAAAGGCAGTCCCGTCTTATTTATTATTCCTCATCATAATAGCATTGCCAC
 
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JMFN038I16+           CATATTTAACACGGCGTCTTCTCTCCGCCGTCAGCCTAGCTAGCAGCTAGCTAGCTCAGT
JMFS118C11+           CATATTTAACACGGCGTCTTCTCTCCGCCGTCAGCCTAGCTAGCAGCTAGCTAGCTCAGT
                      ____________________________________________________________
consensus             CATATTTAACACGGCGTCTTCTCTCCGCCGTCAGCCTAGCTAGCAGCTAGCTAGCTCAGT
 
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JMFN038I16+           GAACCTTGTTGCAGTCAATGGTGGGGTAGCCAATATCGACAGGGTAGCCCATATTAACGC
JMFS118C11+           GAACCTTGTTGCAGTCAATGGTGGGGTAGCCAATATCGACAGGGTAGCCCATATTAACGC
                      ____________________________________________________________
consensus             GAACCTTGTTGCAGTCAATGGTGGGGTAGCCAATATCGACAGGGTAGCCCATATTAACGC
 
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JMFN038I16+           CGCACTTGCCGGGGAGGCCGTTGGTGAGGCCCCGGTCGAGGAGTGGATAGGTTTCGAGCA
JMFS118C11+           CGCACTTGCCGGGGAGGCCGTTGGTGAGG-ACCGGTCGAGGAGTGGATAGGTTTCGAGCA
                      ____________________________________________________________
consensus             CGCACTTGCCGGGGAGGCCGTTGGTGAGGCCCCGGTCGAGGAGTGGATAGGTTTCGAGCA
 
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JMFN038I16+           ACACTGTCCAGCACTTGCAGGCAGCCTGGCGGTCGGCGGTGGAGGTAGCGGCGCTTTTGA
JMFS118C11+           ACACTGTCCAGCACTTGCAGGCAGCCTGGCGGTCGGCGGTGGAGGTAGCGGCGCTTTTGA
                      ____________________________________________________________
consensus             ACACTGTCCAGCACTTGCAGGCAGCCTGGCGGTCGGCGGTGGAGGTAGCGGCGCTTTTGA
 
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JMFN038I16+           TAGACTTAATGACGCCACAGCAAGCGGCGGGGGGATGTCCTTTGGTCTCACCCCGCATAT
JMFS118C11+           TAGACTTAATGACGCCACAGCAAGCGGCGGGGGGATGTCCTTTGGTCTCACCCCGCATAT
                      ____________________________________________________________
consensus             TAGACTTAATGACGCCACAGCAAGCGGCGGGGGGATGTCCTTTGGTCTCACCCCGCATAT
 
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JMFN038I16+           ATCTAAGGCATGGGCTCAGCTTCGCCACCAAGGGGCCGCAAAAAATGGCGGCCTCCGCAC
JMFS118C11+           ATCTAAGGCATGGGCTCAGCTTCGCCACCAAGGGGCCGCAAAAAATGGCGGCCTCCGCAC
                      ____________________________________________________________
consensus             ATCTAAGGCATGGGCTCAGCTTCGCCACCAAGGGGCCGCAAAAAATGGCGGCCTCCGCAC
 
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JMFN038I16+           TCGGCGCCGCCACCACCATGCACACAACTACCATGCATGCAA                  
JMFS118C11+           TCGGCGCCGCCACCACCATGCACACAACTACCATGCATGCAAGCTTTGCCGCCATTACTG
                      ____________________________________________________________
consensus             TCGGCGCCGCCACCACCATGCACACAACTACCATGCATGCAAGCTTTGCCGCCATTACTG
 
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JMFS118C11+           CTATGTGGTTGAGTTCTAGCTTCTTCTAGATAAACGGTGGATATATATATGTGTGTGTTT
                      ____________________________________________________________
consensus             CTATGTGGTTGAGTTCTAGCTTCTTCTAGATAAACGGTGGATATATATATGTGTGTGTTT