Contig 003456:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS115A12Sequence252003456 (3)
JMSF028H17Sequence660003456 (3)ref|XP_009598100.1|234PREDICTED: uncharacterized protein LOC104093968 [Nicotiana tomentosiformis]724003456 (3)ref|XP_009787601.1|225PREDICTED: uncharacterized protein LOC104235511 [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF028H17- ATTCAAGTGTACACAAATTCGCCTAATTTCACC
                      ____________________________________________________________
consensus ATTCAAGTGTACACAAATTCGCCTAATTTCACC
 
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rJMSF028H17- AGTCGCAGCATATTTCTTCCCAAAATAAAGCAGCAACCATAAGCTAAGCTAAGCTAAGCT
                      ____________________________________________________________
consensus AGTCGCAGCATATTTCTTCCCAAAATAAAGCAGCAACCATAAGCTAAGCTAAGCTAAGCT
 
. : . : . : . : . : . :
rJMSF028H17- GCTACATACTTGGAATAATAGAAGATTATAGATACAACAACCTACACTTGTATTTTCCTT
                      ____________________________________________________________
consensus GCTACATACTTGGAATAATAGAAGATTATAGATACAACAACCTACACTTGTATTTTCCTT
 
. : . : . : . : . : . :
rJMSF028H17- CTCTCTGGCCTTGGAATAGTTGGGGGCTTATTATCTCTATGTTTCATGTTATCATCTTCA
                      ____________________________________________________________
consensus CTCTCTGGCCTTGGAATAGTTGGGGGCTTATTATCTCTATGTTTCATGTTATCATCTTCA
 
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rJMSF028H17- TCATCATCATCCACATAAATAACACCATCGTCGTCGTCGTCATCATCATCATCATACATT
                      ____________________________________________________________
consensus TCATCATCATCCACATAAATAACACCATCGTCGTCGTCGTCATCATCATCATCATACATT
 
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rJMSF028H17- TCTAATTCAGCCTCAATCTCATCATCATCCCATTCATCTCCATCATCATAATCCATGTCC
                      ____________________________________________________________
consensus TCTAATTCAGCCTCAATCTCATCATCATCCCATTCATCTCCATCATCATAATCCATGTCC
 
. : . : . : . : . : . :
rJMSF028H17- TCCTCCTCATCATCATCATCATCACCAGCACACATTGTATGGTATTCAGGAGGAGGAGGA
                      ____________________________________________________________
consensus TCCTCCTCATCATCATCATCATCACCAGCACACATTGTATGGTATTCAGGAGGAGGAGGA
 
. : . : . : . : . : . :
rJMSF028H17- CAATCCTCTGTTTCTGCCTTGTCTTTCTTCATGACAAGATGTCGAATGACTCTCTCATCT
                      ____________________________________________________________
consensus CAATCCTCTGTTTCTGCCTTGTCTTTCTTCATGACAAGATGTCGAATGACTCTCTCATCT
 
. : . : . : . : . : . :
rJMSF028H17- TTGTCAAGCAAGTTCTTGAAATCATTAATCCATTTGGCTTCCATTTCAAAATTCATCAAA
JMSF028H17+ TCAAGCAAGTTCTTGAAATCATTAATCCATTTGGCTTCCATTTCAAAATTCATCAAA
                      ____________________________________________________________
consensus TTGTCAAGCAAGTTCTTGAAATCATTAATCCATTTGGCTTCCATTTCAAAATTCATCAAA
 
. : . : . : . : . : . :
rJMSF028H17- ATATAGTGAGCATTGCTTGCTTTTTGTATCTTGTAGGCCAATCTTCGCATACCCCAGTCA
JMSF028H17+ ATATAGTGAGCATTGCTTGCTTTTTGTATCTTGTAGGCCAATCTTCGCATACCCCAGTCA
                      ____________________________________________________________
consensus ATATAGTGAGCATTGCTTGCTTTTTGTATCTTGTAGGCCAATCTTCGCATACCCCAGTCA
 
. : . : . : . : . : . :
rJMSF028H17- CTGAATCTCCATACCTTTCCNTTCTTCTCCTCCAAAAATTCTTGAACCATCTTATTCACA
JMSF028H17+ CTGAATCTCCATACCTTTCCTTTCTTCTCCTCCAAAAATTCTTGAACCATCTTATTCACA
                      ____________________________________________________________
consensus CTGAATCTCCATACCTTTCCTTTCTTCTCCTCCAAAAATTCTTGAACCATCTTATTCACA
 
. : . : . : . : . : . :
rJMSF028H17- CTCTCTACCTCATCCTTGTGATCTTCGTGAATCAAGTAAACAACCTCGTAGTGNCGCATT
JMSF028H17+ CTCTCTACCTCATCCTTGTGATCTTCGTGAATCAAGTAAACAACCTCGTAGTGCCGCATT
                      ____________________________________________________________
consensus CTCTCTACCTCATCCTTGTGATCTTCGTGAATCAAGTAAACAACCTCGTAGTGCCGCATT
 
. : . : . : . : . : . :
rJMSF028H17- CTTTCCACATTTAACTCGCTCTCCAGTCGAA
JMSF028H17+ CTTTCCACATTTAACTCGCTCTCCAGTCGAAGATTTAAAGATTCAAAAAGTTCCCGTTCT
                      ____________________________________________________________
consensus CTTTCCACATTTAACTCGCTCTCCAGTCGAAGATTTAAAGATTCAAAAAGTTCCCGTTCT
 
. : . : . : . : . : . :
JMSF028H17+ TCAGCATCTGCAAACTCGGGCAGAAGCCTACCATCTTCTTTAACCGTTGCCTCTTTAAGG
                      ____________________________________________________________
consensus TCAGCATCTGCAAACTCGGGCAGAAGCCTACCATCTTCTTTAACCGTTGCCTCTTTAAGG
 
. : . : . : . : . : . :
JMSF028H17+ AGGATAGCTTCAGGAAAAGGACCAGTGGCTTCGTCTGGTCTTGGAACGAAGCTGTGGGTG
                      ____________________________________________________________
consensus AGGATAGCTTCAGGAAAAGGACCAGTGGCTTCGTCTGGTCTTGGAACGAAGCTGTGGGTG
 
. : . : . : . : . : . :
JMSF028H17+ TCGGCCTTCTTCTTCTTATTTGCAGCCACTATCAGGGAGGAGAATCTCAACTTTCTAGAG
JMFS115A12+ AACTTTCTAGAG
                      ____________________________________________________________
consensus TCGGCCTTCTTCTTCTTATTTGCAGCCACTATCAGGGAGGAGAATCTCAACTTTCTAGAG
 
. : . : . : . : . : . :
JMSF028H17+ TAAAATGGAAGAGACAAAGAAGAAGGATGGAGATTCACTTTTGCTGAATTGGAATTGGAA
JMFS115A12+ TAAAATGGAAGAGACAAAGAAGAAGGATGGAGATTCACTTTTGCTGAATTGGAATTGGAA
                      ____________________________________________________________
consensus TAAAATGGAAGAGACAAAGAAGAAGGATGGAGATTCACTTTTGCTGAATTGGAATTGGAA
 
. : . : . : . : . : . :
JMSF028H17+ TTGGAATTGGAATGAAAGTTTCGATTTTGAGGATACCCATCACAGGAAGCGGCTATCAAT
JMFS115A12+ TTGGAATTGGAATGAAAGTTTCGATTTTGAGGATACCCATCACAGGAAGCGGCTATCAAT
                      ____________________________________________________________
consensus TTGGAATTGGAATGAAAGTTTCGATTTTGAGGATACCCATCACAGGAAGCGGCTATCAAT
 
. : . : . : . : . : . :
JMSF028H17+ TTCCCAACTTCTGGAGCAGCGGTGAGGAGAAATGACTCCATTTTACAAGCTCAAAACTTC
JMFS115A12+ TTCCCAACTTCTGGAGCAGCGGTGAGGAGAAATGACTCCATTTTACAAGCTCAAAACTTC
                      ____________________________________________________________
consensus TTCCCAACTTCTGGAGCAGCGGTGAGGAGAAATGACTCCATTTTACAAGCTCAAAACTTC
 
. : . : . : . : . : . :
JMFS115A12+ TCAATCAGAGGAGAAGATAGGGAGGTTTTAGCGGGGGATAAGTCGATAAGGCCACAAGGG
                      ____________________________________________________________
consensus TCAATCAGAGGAGAAGATAGGGAGGTTTTAGCGGGGGATAAGTCGATAAGGCCACAAGGG