Contig 003455:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS041A10Sequence632003455 (3)emb|CDP00558.1|4e-46unnamed protein product [Coffea canephora]
JMFS060B02Sequence620003455 (3)ref|XP_009596021.1|3e-39PREDICTED: putative nuclear matrix constituent protein 1-like protein [Nicotian
JMFS112D01Sequence639003455 (3)ref|XP_009596021.1|3e-39PREDICTED: putative nuclear matrix constituent protein 1-like protein [Nicotian

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS041A10+ CCGCAAGTCTTCTTTGTGCTTGGAGAAAGTTGCTTCATGTGCCTCTC
                      ____________________________________________________________
consensus CCGCAAGTCTTCTTTGTGCTTGGAGAAAGTTGCTTCATGTGCCTCTC
 
. : . : . : . : . : . :
JMFS041A10+ GTCTAGCAATTCAAGAGGAATATATTGTAACTTAATTACAAGAACACTAGATAGATGTCA
                      ____________________________________________________________
consensus GTCTAGCAATTCAAGAGGAATATATTGTAACTTAATTACAAGAACACTAGATAGATGTCA
 
. : . : . : . : . : . :
JMFS041A10+ GATTAAATAAATAAATTAAAAAAAAAAAACAAACAAACAAACAAACAAATGTAAGAACAA
                      ____________________________________________________________
consensus GATTAAATAAATAAATTAAAAAAAAAAAACAAACAAACAAACAAACAAATGTAAGAACAA
 
. : . : . : . : . : . :
JMFS041A10+ ATAAATTAGTACAGACAAAGAATCTGACTCTGTATTAAAGGATAGACGCTCCCTCCTCAG
                      ____________________________________________________________
consensus ATAAATTAGTACAGACAAAGAATCTGACTCTGTATTAAAGGATAGACGCTCCCTCCTCAG
 
. : . : . : . : . : . :
JMFS041A10+ GACACTTTCACGGGCCTCAAGCTCATGCAATTTCATGTCAAGCTCCAAATTTTTTCTACT
                      ____________________________________________________________
consensus GACACTTTCACGGGCCTCAAGCTCATGCAATTTCATGTCAAGCTCCAAATTTTTTCTACT
 
. : . : . : . : . : . :
JMFS041A10+ TGCCTCTGCTAGCTTGGCATCAGCAACATGCAACTTTTCTCGCACTTCAAGAGATCTATC
                      ____________________________________________________________
consensus TGCCTCTGCTAGCTTGGCATCAGCAACATGCAACTTTTCTCGCACTTCAAGAGATCTATC
 
. : . : . : . : . : . :
JMFS041A10+ CTGAATTCCAGCTTGTATAGCACTTGCATCTGCAACTTTTACCTCAGATGCAAGATTAAG
                      ____________________________________________________________
consensus CTGAATTCCAGCTTGTATAGCACTTGCATCTGCAACTTTTACCTCAGATGCAAGATTAAG
 
. : . : . : . : . : . :
JMFS041A10+ TTGTTCATATTCTGTACGTGTTTCTCGCAGAGCCTTCTCAAGATCAGCCACACATTGCTT
                      ____________________________________________________________
consensus TTGTTCATATTCTGTACGTGTTTCTCGCAGAGCCTTCTCAAGATCAGCCACACATTGCTT
 
. : . : . : . : . : . :
JMFS041A10+ CTCATAGCTCAAAGCATTTCTTAACTTGTCCTCCCGCTTCTCAACTTCAGTTATTGCAAT
JMFS060B02+ TAACTTGTCCTCCCGCTTCTCAACTTCAGTTATTGCAAT
JMFS112D01+ TAACTTGTCCTCCCGCTTCTCAACTTCAGTTATTGCAAT
                      ____________________________________________________________
consensus CTCATAGCTCAAAGCATTTCTTAACTTGTCCTCCCGCTTCTCAACTTCAGTTATTGCAAT
 
. : . : . : . : . : . :
JMFS041A10+ TAAATGAGCTGTCTTTTCACGTTTTACAATTTCCCGGGCTTCTGCAAGTGCATCTTCAAG
JMFS060B02+ TAAATGAGCTGTCTTTTCACGTTTTACAATTTCCCGGGCTTCTGCAAGTGCATCTTCAAG
JMFS112D01+ TAAATGAGCTGTCTTTTCACGTTTTACAATTTCCCGGGCTTCTGCAAGTGCATCTTCAAG
                      ____________________________________________________________
consensus TAAATGAGCTGTCTTTTCACGTTTTACAATTTCCCGGGCTTCTGCAAGTGCATCTTCAAG
 
. : . : . : . : . : . :
JMFS041A10+ TTCATCATACTTGGAAGTCCACTCCTTTTTCTCAATTAGCAGCAG
JMFS060B02+ TTCATCATACTTGGAAGTCCACTCCTTTTTCTCAATTAGCAGCAGTCCCATATTGTATTG
JMFS112D01+ TTCATCATACTTGGAAGTCCACTCCTTTTTCTCAATTAGCAGCAGTCCCATATTGTATTG
                      ____________________________________________________________
consensus TTCATCATACTTGGAAGTCCACTCCTTTTTCTCAATTAGCAGCAGTCCCATATTGTATTG
 
. : . : . : . : . : . :
JMFS060B02+ ATAATCAAAAAGCTCTCTTTCGAGCCTCTCAGCCTTCTCAAGCAACGCTTCACGGTCCCG
JMFS112D01+ ATAATCAAAAAGCTCTCTTTCGAGCCTCTCAGCCTTCTCAAGCAACGCTTCACGGTCCCG
                      ____________________________________________________________
consensus ATAATCAAAAAGCTCTCTTTCGAGCCTCTCAGCCTTCTCAAGCAACGCTTCACGGTCCCG
 
. : . : . : . : . : . :
JMFS060B02+ CCTCTCCATAGCAGCCTCGTCGAGCAACCCAGCCTCCTTAAACCTCCTCCAATCCTCCAT
JMFS112D01+ CCTCTCCATAGCAGCCTCGTCGAGCAACCCAGCCTCCTTAAACCTCCTCCAATCCTCCAT
                      ____________________________________________________________
consensus CCTCTCCATAGCAGCCTCGTCGAGCAACCCAGCCTCCTTAAACCTCCTCCAATCCTCCAT
 
. : . : . : . : . : . :
JMFS060B02+ GTTCTCCATATCCCGAACTCCCCTGGCCCCATTTTCACTCAACAGCGCCACCGGCGGCGG
JMFS112D01+ GTTCTCCATATCCCGAACTCCCCTGGCCCCATTTTCACTCAACAGCGCCACCGGCGGCGG
                      ____________________________________________________________
consensus GTTCTCCATATCCCGAACTCCCCTGGCCCCATTTTCACTCAACAGCGCCACCGGCGGCGG
 
. : . : . : . : . : . :
JMFS060B02+ TGGAGGAGGAGGACCGTCGACGAACGCAACCGCCTTGCCCTTGCCCTTGCCCGTAGCGGG
JMFS112D01+ TGGAGGAGGAGGACCGTCGACGAACGCAACCGCCTTGCCCTTGCCCTTGCCCGTAGCGGG
                      ____________________________________________________________
consensus TGGAGGAGGAGGACCGTCGACGAACGCAACCGCCTTGCCCTTGCCCTTGCCCGTAGCGGG
 
. : . : . : . : . : . :
JMFS060B02+ TGTTATCGGCAAGGCCGACCACGACTTCTTCTGCGGCGTAAACATTGGGAAAACCCTCGA
JMFS112D01+ TGTTATCGGCAAGGCCGACCACGACTTCTTCTGCGGCGTAAACATTGGGAAAACCCTCGA
                      ____________________________________________________________
consensus TGTTATCGGCAAGGCCGACCACGACTTCTTCTGCGGCGTAAACATTGGGAAAACCCTCGA
 
. : . : . : . : . : . :
JMFS060B02+ GCGCGATTCAGAAGCTGTCAGATCTTAAGTTCATGCAGAAATTGAAGAAACCCTAATTCG
JMFS112D01+ GCGCGATTCAGAAGCTGTCAGATCTTAAGTTCATGCAGAAATTGAAGAAACCCTAATTCG
                      ____________________________________________________________
consensus GCGCGATTCAGAAGCTGTCAGATCTTAAGTTCATGCAGAAATTGAAGAAACCCTAATTCG
 
. : . : . : . : . : . :
JMFS060B02+ AATCTGGGGTTTCCAAGAAATTAATGAAGGACACAATCAATCTGGGTAAGATTAGATTCC
JMFS112D01+ AATCTGGGGTTTCCAAGAAATTAATGAAGGACACAATCAATCTGGGTAAGATTAGATTCC
                      ____________________________________________________________
consensus AATCTGGGGTTTCCAAGAAATTAATGAAGGACACAATCAATCTGGGTAAGATTAGATTCC
 
. : . : . : . : . : . :
JMFS060B02+ AGTACAGACTAGTACAGAGTTGAAAGGCTATGGACTGAATG
JMFS112D01+ AGTACAGACTAGTACAGAGTTGAAAGGCTATGGACTGAATGCAAACTCAAGCGAGTGTTG
                      ____________________________________________________________
consensus AGTACAGACTAGTACAGAGTTGAAAGGCTATGGACTGAATGCAAACTCAAGCGAGTGTTG