Contig 003455:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS041A10Sequence632003455 (3)emb|CDP00558.1|4e-46unnamed protein product [Coffea canephora]
JMFS060B02Sequence620003455 (3)ref|XP_009596021.1|3e-39PREDICTED: putative nuclear matrix constituent protein 1-like protein [Nicotian
JMFS112D01Sequence639003455 (3)ref|XP_009596021.1|3e-39PREDICTED: putative nuclear matrix constituent protein 1-like protein [Nicotian

Alignment

This contig is upended


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JMFS041A10+                        CCGCAAGTCTTCTTTGTGCTTGGAGAAAGTTGCTTCATGTGCCTCTC
                      ____________________________________________________________
consensus                          CCGCAAGTCTTCTTTGTGCTTGGAGAAAGTTGCTTCATGTGCCTCTC
 
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JMFS041A10+           GTCTAGCAATTCAAGAGGAATATATTGTAACTTAATTACAAGAACACTAGATAGATGTCA
                      ____________________________________________________________
consensus             GTCTAGCAATTCAAGAGGAATATATTGTAACTTAATTACAAGAACACTAGATAGATGTCA
 
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JMFS041A10+           GATTAAATAAATAAATTAAAAAAAAAAAACAAACAAACAAACAAACAAATGTAAGAACAA
                      ____________________________________________________________
consensus             GATTAAATAAATAAATTAAAAAAAAAAAACAAACAAACAAACAAACAAATGTAAGAACAA
 
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JMFS041A10+           ATAAATTAGTACAGACAAAGAATCTGACTCTGTATTAAAGGATAGACGCTCCCTCCTCAG
                      ____________________________________________________________
consensus             ATAAATTAGTACAGACAAAGAATCTGACTCTGTATTAAAGGATAGACGCTCCCTCCTCAG
 
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JMFS041A10+           GACACTTTCACGGGCCTCAAGCTCATGCAATTTCATGTCAAGCTCCAAATTTTTTCTACT
                      ____________________________________________________________
consensus             GACACTTTCACGGGCCTCAAGCTCATGCAATTTCATGTCAAGCTCCAAATTTTTTCTACT
 
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JMFS041A10+           TGCCTCTGCTAGCTTGGCATCAGCAACATGCAACTTTTCTCGCACTTCAAGAGATCTATC
                      ____________________________________________________________
consensus             TGCCTCTGCTAGCTTGGCATCAGCAACATGCAACTTTTCTCGCACTTCAAGAGATCTATC
 
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JMFS041A10+           CTGAATTCCAGCTTGTATAGCACTTGCATCTGCAACTTTTACCTCAGATGCAAGATTAAG
                      ____________________________________________________________
consensus             CTGAATTCCAGCTTGTATAGCACTTGCATCTGCAACTTTTACCTCAGATGCAAGATTAAG
 
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JMFS041A10+           TTGTTCATATTCTGTACGTGTTTCTCGCAGAGCCTTCTCAAGATCAGCCACACATTGCTT
                      ____________________________________________________________
consensus             TTGTTCATATTCTGTACGTGTTTCTCGCAGAGCCTTCTCAAGATCAGCCACACATTGCTT
 
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JMFS041A10+           CTCATAGCTCAAAGCATTTCTTAACTTGTCCTCCCGCTTCTCAACTTCAGTTATTGCAAT
JMFS060B02+                                TAACTTGTCCTCCCGCTTCTCAACTTCAGTTATTGCAAT
JMFS112D01+                                TAACTTGTCCTCCCGCTTCTCAACTTCAGTTATTGCAAT
                      ____________________________________________________________
consensus             CTCATAGCTCAAAGCATTTCTTAACTTGTCCTCCCGCTTCTCAACTTCAGTTATTGCAAT
 
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JMFS041A10+           TAAATGAGCTGTCTTTTCACGTTTTACAATTTCCCGGGCTTCTGCAAGTGCATCTTCAAG
JMFS060B02+           TAAATGAGCTGTCTTTTCACGTTTTACAATTTCCCGGGCTTCTGCAAGTGCATCTTCAAG
JMFS112D01+           TAAATGAGCTGTCTTTTCACGTTTTACAATTTCCCGGGCTTCTGCAAGTGCATCTTCAAG
                      ____________________________________________________________
consensus             TAAATGAGCTGTCTTTTCACGTTTTACAATTTCCCGGGCTTCTGCAAGTGCATCTTCAAG
 
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JMFS041A10+           TTCATCATACTTGGAAGTCCACTCCTTTTTCTCAATTAGCAGCAG               
JMFS060B02+           TTCATCATACTTGGAAGTCCACTCCTTTTTCTCAATTAGCAGCAGTCCCATATTGTATTG
JMFS112D01+           TTCATCATACTTGGAAGTCCACTCCTTTTTCTCAATTAGCAGCAGTCCCATATTGTATTG
                      ____________________________________________________________
consensus             TTCATCATACTTGGAAGTCCACTCCTTTTTCTCAATTAGCAGCAGTCCCATATTGTATTG
 
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JMFS060B02+           ATAATCAAAAAGCTCTCTTTCGAGCCTCTCAGCCTTCTCAAGCAACGCTTCACGGTCCCG
JMFS112D01+           ATAATCAAAAAGCTCTCTTTCGAGCCTCTCAGCCTTCTCAAGCAACGCTTCACGGTCCCG
                      ____________________________________________________________
consensus             ATAATCAAAAAGCTCTCTTTCGAGCCTCTCAGCCTTCTCAAGCAACGCTTCACGGTCCCG
 
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JMFS060B02+           CCTCTCCATAGCAGCCTCGTCGAGCAACCCAGCCTCCTTAAACCTCCTCCAATCCTCCAT
JMFS112D01+           CCTCTCCATAGCAGCCTCGTCGAGCAACCCAGCCTCCTTAAACCTCCTCCAATCCTCCAT
                      ____________________________________________________________
consensus             CCTCTCCATAGCAGCCTCGTCGAGCAACCCAGCCTCCTTAAACCTCCTCCAATCCTCCAT
 
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JMFS060B02+           GTTCTCCATATCCCGAACTCCCCTGGCCCCATTTTCACTCAACAGCGCCACCGGCGGCGG
JMFS112D01+           GTTCTCCATATCCCGAACTCCCCTGGCCCCATTTTCACTCAACAGCGCCACCGGCGGCGG
                      ____________________________________________________________
consensus             GTTCTCCATATCCCGAACTCCCCTGGCCCCATTTTCACTCAACAGCGCCACCGGCGGCGG
 
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JMFS060B02+           TGGAGGAGGAGGACCGTCGACGAACGCAACCGCCTTGCCCTTGCCCTTGCCCGTAGCGGG
JMFS112D01+           TGGAGGAGGAGGACCGTCGACGAACGCAACCGCCTTGCCCTTGCCCTTGCCCGTAGCGGG
                      ____________________________________________________________
consensus             TGGAGGAGGAGGACCGTCGACGAACGCAACCGCCTTGCCCTTGCCCTTGCCCGTAGCGGG
 
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JMFS060B02+           TGTTATCGGCAAGGCCGACCACGACTTCTTCTGCGGCGTAAACATTGGGAAAACCCTCGA
JMFS112D01+           TGTTATCGGCAAGGCCGACCACGACTTCTTCTGCGGCGTAAACATTGGGAAAACCCTCGA
                      ____________________________________________________________
consensus             TGTTATCGGCAAGGCCGACCACGACTTCTTCTGCGGCGTAAACATTGGGAAAACCCTCGA
 
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JMFS060B02+           GCGCGATTCAGAAGCTGTCAGATCTTAAGTTCATGCAGAAATTGAAGAAACCCTAATTCG
JMFS112D01+           GCGCGATTCAGAAGCTGTCAGATCTTAAGTTCATGCAGAAATTGAAGAAACCCTAATTCG
                      ____________________________________________________________
consensus             GCGCGATTCAGAAGCTGTCAGATCTTAAGTTCATGCAGAAATTGAAGAAACCCTAATTCG
 
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JMFS060B02+           AATCTGGGGTTTCCAAGAAATTAATGAAGGACACAATCAATCTGGGTAAGATTAGATTCC
JMFS112D01+           AATCTGGGGTTTCCAAGAAATTAATGAAGGACACAATCAATCTGGGTAAGATTAGATTCC
                      ____________________________________________________________
consensus             AATCTGGGGTTTCCAAGAAATTAATGAAGGACACAATCAATCTGGGTAAGATTAGATTCC
 
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JMFS060B02+           AGTACAGACTAGTACAGAGTTGAAAGGCTATGGACTGAATG                   
JMFS112D01+           AGTACAGACTAGTACAGAGTTGAAAGGCTATGGACTGAATGCAAACTCAAGCGAGTGTTG
                      ____________________________________________________________
consensus             AGTACAGACTAGTACAGAGTTGAAAGGCTATGGACTGAATGCAAACTCAAGCGAGTGTTG