Contig 003451:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS107D03Sequence626003451 (2)emb|CDP18669.1|3e-107unnamed protein product [Coffea canephora]
JMFS124A09Sequence575003451 (2)ref|XP_010315461.1|8e-70PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase V subunit 1 [Solanu

Alignment

This contig is upended


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JMFS124A09+                                                      ATTGCAGCTCCACATAT
                      ____________________________________________________________
consensus                                                        ATTGCAGCTCCACATAT
 
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JMFS124A09+           TCATTGTAAGATGACCTCAAGTTATTCAACAACTTTGCTTCACCCTGAATGCTTCTCTGG
                      ____________________________________________________________
consensus             TCATTGTAAGATGACCTCAAGTTATTCAACAACTTTGCTTCACCCTGAATGCTTCTCTGG
 
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JMFS124A09+           ATTTTCTCTCTAGCAGCTTTGGCAATGAAAAAGTCCCCAAGACCAATACTAAAGCCTTCT
                      ____________________________________________________________
consensus             ATTTTCTCTCTAGCAGCTTTGGCAATGAAAAAGTCCCCAAGACCAATACTAAAGCCTTCT
 
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JMFS124A09+           TTAAACAGATATTCCATCAAAAGAGGCTGCAATGCATTAAAGAACTGTATAACCTCCTTT
                      ____________________________________________________________
consensus             TTAAACAGATATTCCATCAAAAGAGGCTGCAATGCATTAAAGAACTGTATAACCTCCTTT
 
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JMFS124A09+           GGACCCTTTGAAAAATAAATTGAAGAAACAATATCATTGAGGATTGATGACACAGTCTCC
                      ____________________________________________________________
consensus             GGACCCTTTGAAAAATAAATTGAAGAAACAATATCATTGAGGATTGATGACACAGTCTCC
 
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JMFS124A09+           TTGCTATAGTCAATTGTTAACACCTCACTTTTGTTAATAGTATATCTATCTCCTAAACAG
                      ____________________________________________________________
consensus             TTGCTATAGTCAATTGTTAACACCTCACTTTTGTTAATAGTATATCTATCTCCTAAACAG
 
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JMFS124A09+           TCAAAGCACTTAGGTAAAGCAGTCTCCAAAATCTGAAAGGTGGTCCAATGAGGGACAGAA
JMFS107D03+                                             GAAAGGTGGTCCAATGAGGGACAGAA
                      ____________________________________________________________
consensus             TCAAAGCACTTAGGTAAAGCAGTCTCCAAAATCTGAAAGGTGGTCCAATGAGGGACAGAA
 
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JMFS124A09+           ATATGTGACTTTACAAGTGCAGGCTTAGGTAAAGTACTTGGGAGAAACATGGCCAGTTGT
JMFS107D03+           ATATGTGACTTTACAAGTGCAGGCTTAGGTAAAGTACTTGGGAGAAACATGGCCAGTTGT
                      ____________________________________________________________
consensus             ATATGTGACTTTACAAGTGCAGGCTTAGGTAAAGTACTTGGGAGAAACATGGCCAGTTGT
 
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JMFS124A09+           TGGGCACAAGCTTTACTGAAGAAGTAATTTTCAAACATTAGTTTGAATGCCAACAAAGAG
JMFS107D03+           TGGGCACAAGCTTTACTGAAGAAGTAATTTTCAAACATTAGTTTGAATGCCAACAAAGAG
                      ____________________________________________________________
consensus             TGGGCACAAGCTTTACTGAAGAAGTAATTTTCAAACATTAGTTTGAATGCCAACAAAGAG
 
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JMFS124A09+           TCACAGCCCATCTGCAAATTGAAATTACCAGTATGTGAACTCAACAGTTGTTTCTCTACA
JMFS107D03+           TCACAGCCCATCTGCAAATTGAAATTACCAGTATGTGAACTCAACAGTTGTTTCTCTACA
                      ____________________________________________________________
consensus             TCACAGCCCATCTGCAAATTGAAATTACCAGTATGTGAACTCAACAGTTGTTTCTCTACA
 
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JMFS124A09+           GAGAAGAGCTCCAAAACC                                          
JMFS107D03+           GAGAAGAGCTCCAAAACCTCTGCTTTGGCAGCTAGAGACTGGGGATAAAACAGATGTATG
                      ____________________________________________________________
consensus             GAGAAGAGCTCCAAAACCTCTGCTTTGGCAGCTAGAGACTGGGGATAAAACAGATGTATG
 
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JMFS107D03+           CAATCACCATCAAAGTCAGCACTTAGGGGCCCACAAATGAGCGGATTGATCTTGACTGTG
                      ____________________________________________________________
consensus             CAATCACCATCAAAGTCAGCACTTAGGGGCCCACAAATGAGCGGATTGATCTTGACTGTG
 
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JMFS107D03+           TGATCATCATGTACATATACTGATAAAGCTTGCAAGGAATGCTTATGTGTAGTTGGTGGC
                      ____________________________________________________________
consensus             TGATCATCATGTACATATACTGATAAAGCTTGCAAGGAATGCTTATGTGTAGTTGGTGGC
 
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JMFS107D03+           CTATTGATAAACACAATATCCCCATCCATAATTCTCCTGTGAATAAGCTGGCCAGGCCTC
                      ____________________________________________________________
consensus             CTATTGATAAACACAATATCCCCATCCATAATTCTCCTGTGAATAAGCTGGCCAGGCCTC
 
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JMFS107D03+           AAAAAGGTGTGCGATGTGGATCCTTCACTCAGAGAATATGAGGATGATCCATCCTTGTAG
                      ____________________________________________________________
consensus             AAAAAGGTGTGCGATGTGGATCCTTCACTCAGAGAATATGAGGATGATCCATCCTTGTAG
 
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JMFS107D03+           GTCAAGCACAATTTTTCATCAACTAACTTCTGCAGGTATGCCACATTGTGCAGACTAACT
                      ____________________________________________________________
consensus             GTCAAGCACAATTTTTCATCAACTAACTTCTGCAGGTATGCCACATTGTGCAGACTAACT
 
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JMFS107D03+           CTTTCTTCAAAAGTGATTCTTTGGGCAACCTCAAATGGTAATCCAATTTCATCCACCCCC
                      ____________________________________________________________
consensus             CTTTCTTCAAAAGTGATTCTTTGGGCAACCTCAAATGGTAATCCAATTTCATCCACCCCC