Contig 003443:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039E20+                   TTTTTTTTTTCAAAGGAAAATGAATGTTAAAAGTTAAAAGCATTACACAGCT
                      ____________________________________________________________
consensus                     TTTTTTTTTTCAAAGGAAAATGAATGTTAAAAGTTAAAAGCATTACACAGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039E20+           ATGCTGAACTGCAGAGGAGAGTCTTAAGAGCATATTTATAACCATGTAGTCCAGGGCTCT
rJMSF039E20-                           AGAGTCTTAAGAGCATATTTATAACCATGTAGTCCAGGGCTCT
                      ____________________________________________________________
consensus             ATGCTGAACTGCAGAGGAGAGTCTTAAGAGCATATTTATAACCATGTAGTCCAGGGCTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039E20+           CTTCCATGTAGCACATTACATGTGTATTACATATAATATAATATATATATTACAGAGAAT
rJMSF039E20-          CTTCCATGTAGCACATTACATGTGTATTACATATAATATAATATATATATTACAGAGAAT
JMFN008I13+                                                                AGAGAAT
                      ____________________________________________________________
consensus             CTTCCATGTAGCACATTACATGTGTATTACATATAATATAATATATATATTACAGAGAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039E20+           ATACAACTCAGATTAAACATCAGTTCAACGAGTCGCTTCTGACCAGAAAAGAAATCAGCA
rJMSF039E20-          ATACAACTCAGATTAAACATCAGTTCAACGAGTCGCTTCTGACCAGAAAAGAAATCAGCA
JMFN008I13+           ATACAACTCAGATTAAACATCAGTTCAACGAGTCGCTTCTGACCAGAAAAGAAATCAGCA
                      ____________________________________________________________
consensus             ATACAACTCAGATTAAACATCAGTTCAACGAGTCGCTTCTGACCAGAAAAGAAATCAGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039E20+           AGTTAACATTGAGCATCTGAATTGACGAGGAAATTCTGGAAATTTTCTCGATACATATGA
rJMSF039E20-          AGTTAACATTGAGCATCTGAATTGACGAGGAAATTCTGGAAATTTTCTCGATACATATGA
JMFN008I13+           AGTTAACATTGAGCATCTGAATTGACGAGGAAATTCTGGAAATTTTCTCGATACATATGA
                      ____________________________________________________________
consensus             AGTTAACATTGAGCATCTGAATTGACGAGGAAATTCTGGAAATTTTCTCGATACATATGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039E20+           GGGAAAAAGAAAACAAAAAACAAGGCTAATTGATTCATCACTGAACTGCAATGTCTGCTC
rJMSF039E20-          GGGAAAAAGAAAACAAAAAACAAGGCTAATTGATTCATCACTGAACTGCAATGTCTGCTC
JMFN008I13+           GGGAAAAAGAAAACAAAAAACAAGGCTAATTGATTCATCACTGAACTGCAATGTCTGCTC
                      ____________________________________________________________
consensus             GGGAAAAAGAAAACAAAAAACAAGGCTAATTGATTCATCACTGAACTGCAATGTCTGCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039E20+           TTGGCTGATCTGTCATAGTATTATGAGAAGTTTCCTTAATCTCCTTCACAGGACTATCGT
rJMSF039E20-          TTGGCTGATCTGTCATAGTATTATGAGAAGTTTCCTTAATCTCCTTCACAGGACTATCGT
JMFN008I13+           TTGGCTGATCTGTCATAGTATTATGAGAAGTTTCCTTAATCTCCTTCACAGGACTATCGT
                      ____________________________________________________________
consensus             TTGGCTGATCTGTCATAGTATTATGAGAAGTTTCCTTAATCTCCTTCACAGGACTATCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039E20+           TAATCTCTTTCACCGGGGGAGTTTCCTTAGTCTCGTTCGCCAGAGCGTCCTTTATCTCCT
rJMSF039E20-          TAATCTCTTTCACCGGGGGAGTTTCCTTAGTCTCGTTCGCCAGAGCGTCCTTTATCTCCT
JMFN008I13+           TAATATCTTTCACCGGGGGAGTTTCCTTAGTCTCGTTCGCCAGAGCGTCCTTTATCTCCT
JMFS100A10+                                                      AGCGTCCTTTATCTCCT
                      ____________________________________________________________
consensus             TAATCTCTTTCACCGGGGGAGTTTCCTTAGTCTCGTTCGCCAGAGCGTCCTTTATCTCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039E20+           TCAC                                                        
rJMSF039E20-          TCAC                                                        
JMFN008I13+           TCACCCGGATTTCTTTTGACTCGTTAGTTGATGTTTTCTTTGTTCCCTTGACTGACGACT
JMFS100A10+           TCACCCGGATTTCTTNTGACTCGTTAGTTGATGTTTTCTTTGTTCCCTTGACTGACGACT
                      ____________________________________________________________
consensus             TCACCCGGATTTCTTTTGACTCGTTAGTTGATGTTTTCTTTGTTCCCTTGACTGACGACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN008I13+           TGCCAGTCGCCTTCACTCTGTTATTTCCATTAATATTAACTCGCCCGCTTATCTGGTCCT
JMFS100A10+           TGCCAGTCGCCTTCACTCTGTTATTTCCATTAATATTAACTCGCCCGCTTATCTGGTCCT
                      ____________________________________________________________
consensus             TGCCAGTCGCCTTCACTCTGTTATTTCCATTAATATTAACTCGCCCGCTTATCTGGTCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN008I13+           TCTTCTTGGGACTGGAATGCGTTGTGTTATATTCTCTGTAGGCACCAATGCTGTGGCGGG
JMFS100A10+           TCTTCTTGGGACTGGAATGCGTTGTGTTATATTCTCTGTAGGCACCAATGCTGTGGCGGG
                      ____________________________________________________________
consensus             TCTTCTTGGGACTGGAATGCGTTGTGTTATATTCTCTGTAGGCACCAATGCTGTGGCGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN008I13+           TGGCCCTGACCGAATCTTTTTTCTCTTCTTGGGAAGTAACAGCATCACCAGTGCTATTTC
JMFS100A10+           TGGCCCTGACCGAATCTTTTTTCTCTTCTTGGGAAGTAACAGCATCACCAGTGCTATTTC
                      ____________________________________________________________
consensus             TGGCCCTGACCGAATCTTTTTTCTCTTCTTGGGAAGTAACAGCATCACCAGTGCTATTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN008I13+           TCCGCGTAAAGTTTGGTGATTTGGCTCGAGTCACAGGCAGCTTCTTAAGTTCAACCTTTG
JMFS100A10+           TCCGCGTAAAGTTTGGTGATTTGGCTCGAGTCACAGGCAGCTTCTTAAGTTCAACCTTTG
                      ____________________________________________________________
consensus             TCCGCGTAAAGTTTGGTGATTTGGCTCGAGTCACAGGCAGCTTCTTAAGTTCAACCTTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN008I13+           GAGGCGGCCCTTCAT                                             
JMFS100A10+           GAGGCGGCCCTTCATGGTAAAAGCTAGGAACTGGATTTGCTTTATAGGCCATGTTCTTAC
                      ____________________________________________________________
consensus             GAGGCGGCCCTTCATGGTAAAAGCTAGGAACTGGATTTGCTTTATAGGCCATGTTCTTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS100A10+           GAAGCTGCTTAATAGCTGCTTCCTCCTCTTCCTTGGTCCTGGCAGCACATTCTTGTTTCT
                      ____________________________________________________________
consensus             GAAGCTGCTTAATAGCTGCTTCCTCCTCTTCCTTGGTCCTGGCAGCACATTCTTGTTTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS100A10+           CTGCTTCCAAAGCTTTGTGTTTCTCGTCCAACTTCTCGTAAAACTCCTTACGTCTTGCTA
                      ____________________________________________________________
consensus             CTGCTTCCAAAGCTTTGTGTTTCTCGTCCAACTTCTCGTAAAACTCCTTACGTCTTGCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS100A10+           CGCGTTCAGCAGATCTAAAGGATGGAGCTACCGGGACAGTAAGTTTGGATTTGATGGTTC
                      ____________________________________________________________
consensus             CGCGTTCAGCAGATCTAAAGGATGGAGCTACCGGGACAGTAAGTTTGGATTTGATGGTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS100A10+           TTACGGACGCAGCAGTAGAGGAAGTCATGGACCAACTATCTTCTTCATCGTGGCGTTTCA
                      ____________________________________________________________
consensus             TTACGGACGCAGCAGTAGAGGAAGTCATGGACCAACTATCTTCTTCATCGTGGCGTTTCA